chr2 : 17,538,022 17,538,275
253 bp 146 TFs 1 linked gene
This 253 bp open chromatin element is linked to VSNL1 and is bound by 146 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
VSNL1 1.7 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:17,533,022 – 17,543,275
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
146 transcription factors
Source
Cell type
ARID2 1 dataset
ChIP Hep-G2 GSE69566.ARID2.Hep-G2 177 bp overlap
ARID5B 1 dataset
ChIP HepG2 ENCFF964FWK 253 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 253 bp overlap
ATF1 1 dataset
ChIP HepG2 ENCFF239LTQ 253 bp overlap
BCOR 2 datasets
ChIP WA01 GSE104690.BCOR.WA01 253 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 219 bp overlap
BMI1 2 datasets
ChIP GM12878 ENCSR469WII.BMI1.GM12878 103 bp overlap
ChIP HEK293T GSE34774.BMI1.HEK293T 236 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 192 bp overlap
BRD4 3 datasets
ChIP COLO-205 GSE73319.BRD4.COLO-205 178 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 132 bp overlap
ChIP RH4_shCHD4 GSE140115.BRD4.RH4_shCHD4 189 bp overlap
CBX2 2 datasets
ChIP HEK293T GSE34774.CBX2.HEK293T 253 bp overlap
ChIP K562 ENCFF578AQI 76 bp overlap
CBX4 1 dataset
ChIP HEK293T GSE53495.CBX4.HEK293T 196 bp overlap
CBX8 3 datasets
ChIP A-549 ENCSR616MOB.CBX8.A-549 247 bp overlap
ChIP K562 ENCFF485TBL 217 bp overlap
ChIP K562 ENCFF485TBL 217 bp overlap
CCAR2 2 datasets
ChIP Hep-G2 GSE120104.CCAR2.Hep-G2 157 bp overlap
ChIP Hep-G2 ENCSR247XFV.CCAR2.Hep-G2 140 bp overlap
CDK8 1 dataset
ChIP SW480 GSE53602.CDK8.SW480 162 bp overlap
CDKN1B 1 dataset
ChIP MDA-MB-231_p27CK-DD GSE112444.CDKN1B.MDA-MB-231_p27CK-DD 211 bp overlap
CHD1 1 dataset
ChIP H1 ENCFF998XEK 85 bp overlap
CHD2 3 datasets
ChIP SK-N-SH ENCFF669KMB 151 bp overlap
ChIP SK-N-SH ENCSR274SLQ.CHD2.SK-N-SH 153 bp overlap
ChIP WA01 ENCSR000EBT.CHD2.WA01 165 bp overlap
CHD7 1 dataset
ChIP WA01 ENCSR000AVA.CHD7.WA01 175 bp overlap
CREB1 1 dataset
ChIP WA01 ENCSR000BSN.CREB1.WA01 234 bp overlap
CTCF 3 datasets
Motif DE_12h DE_12h-CTCF_MA0139.2 15 bp overlap
ChIP epithelial cell of prostate ENCFF086GTI 117 bp overlap
ChIP erythroid GSE67783.CTCF.erythroid 149 bp overlap
DMAP1 1 dataset
ChIP HepG2 ENCFF247MSU 253 bp overlap
E2F6 3 datasets
ChIP H1 ENCFF785DWK 253 bp overlap
ChIP H1 ENCFF785DWK 163 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 231 bp overlap
ELF1 1 dataset
ChIP Hep-G2 ENCSR321VGW.ELF1.Hep-G2 200 bp overlap
ELF3 2 datasets
ChIP PDAC GSE64557.ELF3.PDAC 253 bp overlap
ChIP PDAC_SHCTR GSE64557.ELF3.PDAC_SHCTR 253 bp overlap
ERF::NHLH1 2 datasets
Motif DE_12h DE_12h-ERFNHLH1_MA1938.2 16 bp overlap
Motif ES_0h ES_0h-ERFNHLH1_MA1938.2 16 bp overlap
ETV4 1 dataset
ChIP Hep-G2 ENCSR714YZG.ETV4.Hep-G2 178 bp overlap
ETV5 1 dataset
ChIP HepG2 ENCFF456LSA 253 bp overlap
EZH2 10 datasets
ChIP GM23248 ENCSR131FFJ.EZH2.GM23248 253 bp overlap
ChIP LNCaP-abl GSE39459.EZH2.LNCaP-abl 253 bp overlap
ChIP T-REx-293_K27WT_12h GSE118954.EZH2.T-REx-293_K27WT_12h 147 bp overlap
ChIP THP-1 GSE135024.EZH2.THP-1 253 bp overlap
ChIP WA01 ENCSR000ASY.EZH2.WA01 121 bp overlap
ChIP fibroblast_DERMAL ENCSR000ASE.EZH2.fibroblast_DERMAL 186 bp overlap
ChIP hepatocyte ENCSR384LYW.EZH2.hepatocyte 253 bp overlap
ChIP neural progenitor cell ENCFF018MKA 124 bp overlap
ChIP neural progenitor cell ENCFF472NFV 253 bp overlap
ChIP neural_progenitor ENCSR069DPL.EZH2.neural_progenitor 163 bp overlap
FOS 1 dataset
ChIP CFPAC-1 GSE119930.FOS.CFPAC-1 253 bp overlap
FOXJ3 1 dataset
ChIP HepG2 ENCFF430OSX 53 bp overlap
FOXK1 1 dataset
ChIP Hep-G2 ENCSR603BJQ.FOXK1.Hep-G2 155 bp overlap
GMEB1 1 dataset
ChIP Hep-G2 ENCSR780OXL.GMEB1.Hep-G2 143 bp overlap
GTF2F1 2 datasets
ChIP Hep-G2 GSE120104.GTF2F1.Hep-G2 233 bp overlap
ChIP Hep-G2 ENCSR382PVA.GTF2F1.Hep-G2 225 bp overlap
HBP1 1 dataset
ChIP HepG2 ENCFF512UDH 253 bp overlap
HDAC1 2 datasets
ChIP Hep-G2 ENCSR750OWO.HDAC1.Hep-G2 134 bp overlap
ChIP HepG2 ENCFF750ZWM 253 bp overlap
HDAC2 1 dataset
ChIP Hep-G2 ENCSR000BMC.HDAC2.Hep-G2 253 bp overlap
HMG20A 1 dataset
ChIP HepG2 ENCFF599VWU 253 bp overlap
HNF1A 1 dataset
ChIP HepG2 ENCFF352VYI 159 bp overlap
HNRNPK 2 datasets
ChIP Hep-G2 GSE120104.HNRNPK.Hep-G2 95 bp overlap
ChIP HepG2 ENCFF826MXP 143 bp overlap
HNRNPLL 2 datasets
ChIP HepG2 ENCFF355PIC 253 bp overlap
ChIP HepG2 ENCFF952XAB 253 bp overlap
HOXA3 1 dataset
ChIP Hep-G2 ENCSR999JKC.HOXA3.Hep-G2 197 bp overlap
JARID2 2 datasets
ChIP MRC-5_IPS25_CTR GSE48515.JARID2.MRC-5_IPS25_CTR 230 bp overlap
ChIP MRC-5_IPS25_MEG3 GSE48515.JARID2.MRC-5_IPS25_MEG3 159 bp overlap
JRK 1 dataset
ChIP HepG2 ENCFF350YLO 132 bp overlap
JUND 4 datasets
ChIP H1 ENCFF468JZD 214 bp overlap
ChIP Hep-G2 ENCSR000BGK.JUND.Hep-G2 167 bp overlap
ChIP HepG2 ENCFF172HFZ 245 bp overlap
ChIP WA01 ENCSR000BKP.JUND.WA01 156 bp overlap
KDM1A 1 dataset
ChIP pancreatic-progenitor_GT GSE104840.KDM1A.pancreatic-progenitor_GT 148 bp overlap
KDM2A 1 dataset
ChIP HepG2 ENCFF491GTR 197 bp overlap
KDM4A 1 dataset
ChIP WA01 ENCSR000AVC.KDM4A.WA01 253 bp overlap
KDM6A 1 dataset
ChIP HepG2 ENCFF135ECT 136 bp overlap
KLF11 1 dataset
ChIP HepG2 ENCFF820VKU 56 bp overlap
KLF6 1 dataset
ChIP Hep-G2 ENCSR757EKM.KLF6.Hep-G2 58 bp overlap
KLF9 1 dataset
ChIP HepG2 ENCFF961QZM 101 bp overlap
KMT2A 1 dataset
ChIP Hep-G2 ENCSR692GFR.KMT2A.Hep-G2 241 bp overlap
LCOR 1 dataset
ChIP HepG2 ENCFF499KCU 108 bp overlap
MAX 4 datasets
ChIP H1 ENCFF914VQY 253 bp overlap
ChIP Hep-G2 ENCSR168DYA.MAX.Hep-G2 248 bp overlap
ChIP Hep-G2 ENCSR000BTM.MAX.Hep-G2 127 bp overlap
ChIP WA01 ENCSR000EUP.MAX.WA01 215 bp overlap
MCRS1 1 dataset
ChIP Huh-7 GSE97411.MCRS1.Huh-7 219 bp overlap
MED1 1 dataset
ChIP Hep-G2 ENCSR959XNY.MED1.Hep-G2 205 bp overlap
MED26 1 dataset
ChIP HCT-116 GSE121355.MED26.HCT-116 253 bp overlap
MEF2D 1 dataset
ChIP HepG2 ENCFF576WDO 85 bp overlap
MTA2 1 dataset
ChIP RH4 GSE155861.MTA2.RH4 211 bp overlap
MXD4 2 datasets
ChIP Hep-G2 ENCSR441KFW.MXD4.Hep-G2 217 bp overlap
ChIP HepG2 ENCFF308ELA 253 bp overlap
MXI1 2 datasets
ChIP SK-N-SH ENCSR000EIA.MXI1.SK-N-SH 148 bp overlap
ChIP neural ENCSR934NHU.MXI1.neural 53 bp overlap
MYB 1 dataset
Motif DE_12h DE_12h-MYB_MA0100.4 6 bp overlap
MYBL2 2 datasets
ChIP A-673 GSE119971.MYBL2.A-673 97 bp overlap
ChIP Hep-G2 ENCSR581KCO.MYBL2.Hep-G2 253 bp overlap
MYCN 1 dataset
ChIP Kelly_sensitive GSE115249.MYCN.Kelly_sensitive 200 bp overlap
MYNN 1 dataset
ChIP Hep-G2 ENCSR398TMP.MYNN.Hep-G2 148 bp overlap
Msgn1 1 dataset
Motif DE_12h DE_12h-Msgn1_MA1524.3 10 bp overlap
NAIF1 1 dataset
ChIP HepG2 ENCFF291NIS 253 bp overlap
NFAT5 1 dataset
ChIP Hep-G2 ENCSR565BVI.NFAT5.Hep-G2 151 bp overlap
NKX2-5 2 datasets
Motif DE_12h DE_12h-NKX2-5_MA0063.3 7 bp overlap
Motif ES_0h ES_0h-NKX2-5_MA0063.3 7 bp overlap
OVOL1 1 dataset
Motif DE_12h DE_12h-OVOL1_MA1544.2 10 bp overlap
PCBP2 2 datasets
ChIP Hep-G2 ENCSR945NSF.PCBP2.Hep-G2 211 bp overlap
ChIP Hep-G2 GSE120104.PCBP2.Hep-G2 211 bp overlap
PCGF2 1 dataset
ChIP fibroblast_OHT GSE55605.PCGF2.fibroblast_OHT 253 bp overlap
PHF19 1 dataset
ChIP DU145_CTR GSE135623.PHF19.DU145_CTR 253 bp overlap
PHF21A 1 dataset
ChIP HepG2 ENCFF525EUW 253 bp overlap
PHF5A 1 dataset
ChIP Hep-G2 ENCSR191TLD.PHF5A.Hep-G2 134 bp overlap
PHIP 2 datasets
ChIP HCT-116_ab834 GSE101646.PHIP.HCT-116_ab834 220 bp overlap
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 222 bp overlap
PITX1 1 dataset
ChIP HepG2 ENCFF468QTQ 253 bp overlap
PRDM15 2 datasets
ChIP HepG2 ENCFF259LUZ 253 bp overlap
ChIP WTC11 ENCFF108TMF 211 bp overlap
PROX1 1 dataset
ChIP SW480 GSE60390.PROX1.SW480 109 bp overlap
PRPF4 2 datasets
ChIP Hep-G2 ENCSR243LNQ.PRPF4.Hep-G2 181 bp overlap
ChIP Hep-G2 GSE120104.PRPF4.Hep-G2 198 bp overlap
RAD21 3 datasets
ChIP HepG2 ENCFF360ZSW 192 bp overlap
ChIP HepG2 ENCFF906QIS 225 bp overlap
ChIP liver ENCFF522JHE 253 bp overlap
RBBP4 1 dataset
ChIP RH5 GSE155861.RBBP4.RH5 169 bp overlap
RCOR1 1 dataset
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 158 bp overlap
RING1 2 datasets
ChIP SYO-1_shCt GSE139053.RING1.SYO-1_shCt 171 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.RING1.SYO-1_shRING1A-B 253 bp overlap
RNF2 5 datasets
ChIP A-549 ENCSR798EGJ.RNF2.A-549 150 bp overlap
ChIP A549 ENCFF650XYA 152 bp overlap
ChIP GM12878 ENCSR679FAB.RNF2.GM12878 242 bp overlap
ChIP K-562 ENCSR076YPO.RNF2.K-562 253 bp overlap
ChIP WA09 GSE105028.RNF2.WA09 213 bp overlap
RNF219 1 dataset
ChIP HepG2 ENCFF710YJO 116 bp overlap
SIN3A 1 dataset
ChIP WA01 ENCSR000EBO.SIN3A.WA01 213 bp overlap
SMARCB1 2 datasets
ChIP Hep-G2 GSE69566.SMARCB1.Hep-G2 253 bp overlap
ChIP hiPSC GSE124903.SMARCB1.hiPSC 151 bp overlap
SMARCC1 2 datasets
ChIP SK-N-MC GSE94275.SMARCC1.SK-N-MC 82 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 177 bp overlap
SMC1A 2 datasets
ChIP Hep-G2 GSE76893.SMC1A.Hep-G2 153 bp overlap
ChIP primary-epidermal-keratinocyte GSE85526.SMC1A.primary-epidermal-keratinocyte 168 bp overlap
SP1 6 datasets
ChIP H1 ENCFF263FUH 253 bp overlap
ChIP Hep-G2 ENCSR460YAM.SP1.Hep-G2 142 bp overlap
ChIP Hep-G2 ENCSR000BJX.SP1.Hep-G2 133 bp overlap
ChIP HepG2 ENCFF123KAM 253 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 234 bp overlap
ChIP liver ENCFF769YSM 137 bp overlap
STAG1 1 dataset
ChIP Hep-G2 ENCSR167MTG.STAG1.Hep-G2 121 bp overlap
SUPT5H 1 dataset
ChIP DLD-1_NELFCD-AID GSE144786.SUPT5H.DLD-1_NELFCD-AID 166 bp overlap
SUZ12 5 datasets
ChIP Aska-SS GSE108025.SUZ12.Aska-SS 141 bp overlap
ChIP CRL-7250_shSS18-SSX GSE108025.SUZ12.CRL-7250_shSS18-SSX 253 bp overlap
ChIP GM12878 ENCSR091BOQ.SUZ12.GM12878 175 bp overlap
ChIP SYO-1_shCt GSE139053.SUZ12.SYO-1_shCt 253 bp overlap
ChIP hiPSC GSE124903.SUZ12.hiPSC 198 bp overlap
Spi1 1 dataset
Motif DE_12h DE_12h-Spi1_MA0080.7 13 bp overlap
TAF1 4 datasets
ChIP H1 ENCFF478SZO 253 bp overlap
ChIP Hep-G2 ENCSR918OKK.TAF1.Hep-G2 243 bp overlap
ChIP WA01 ENCSR000BHO.TAF1.WA01 216 bp overlap
ChIP liver ENCSR016BMM.TAF1.liver 149 bp overlap
TBP 3 datasets
ChIP hESC GSE122298.TBP.hESC 179 bp overlap
ChIP hESC_10h GSE122298.TBP.hESC_10h 143 bp overlap
ChIP hESC_8h GSE122298.TBP.hESC_8h 170 bp overlap
TCF12 1 dataset
ChIP Hep-G2 ENCSR000BJG.TCF12.Hep-G2 112 bp overlap
TEAD4 4 datasets
ChIP ESC S26-ESC-d0-TEAD4-exp1 253 bp overlap
ChIP H1 ENCFF778PAX 218 bp overlap
ChIP HepG2 ENCFF006QNB 148 bp overlap
ChIP HepG2 ENCFF250NXO 253 bp overlap
TFAP2B 1 dataset
ChIP SK-N-SH ENCFF869XXQ 253 bp overlap
TFDP2 1 dataset
ChIP Hep-G2 ENCSR069JKP.TFDP2.Hep-G2 128 bp overlap
TP53 1 dataset
ChIP SW480_0h_TNFa GSE102796.TP53.SW480_0h_TNFa 253 bp overlap
U2AF1 1 dataset
ChIP Hep-G2 GSE120104.U2AF1.Hep-G2 172 bp overlap
XRCC5 2 datasets
ChIP HepG2 ENCFF330PDO 253 bp overlap
ChIP HepG2 ENCFF680LVJ 253 bp overlap
YY1 5 datasets
ChIP H1 ENCFF524BTL 253 bp overlap
ChIP Hep-G2 ENCSR000BNT.YY1.Hep-G2 208 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 196 bp overlap
ChIP liver ENCFF515BWJ 253 bp overlap
ChIP liver ENCSR994YLZ.YY1.liver 253 bp overlap
Yy1 2 datasets
Motif DE_12h DE_12h-Yy1_MA0095.4 8 bp overlap
Motif ES_0h ES_0h-Yy1_MA0095.4 8 bp overlap
ZBED4 1 dataset
ChIP Hep-G2 ENCSR409PMR.ZBED4.Hep-G2 241 bp overlap
ZBTB12 2 datasets
Motif DE_12h DE_12h-ZBTB12_MA1649.2 7 bp overlap
Motif ES_0h ES_0h-ZBTB12_MA1649.2 7 bp overlap
ZBTB3 1 dataset
ChIP HepG2 ENCFF224AQL 78 bp overlap
ZBTB38 1 dataset
ChIP HepG2 ENCFF875UQX 253 bp overlap
ZEB1 1 dataset
ChIP HepG2 ENCFF808RQT 164 bp overlap
ZEB2 1 dataset
ChIP HEK293 ENCSR417VWF.ZEB2.HEK293 91 bp overlap
ZFP14 2 datasets
Motif DE_12h DE_12h-ZFP14_MA1972.1 15 bp overlap
Motif ES_0h ES_0h-ZFP14_MA1972.1 15 bp overlap
ZFP64 1 dataset
ChIP Hep-G2 ENCSR487CPI.ZFP64.Hep-G2 218 bp overlap
ZFP82 1 dataset
ChIP HepG2 ENCFF665HBX 253 bp overlap
ZFY 1 dataset
ChIP Hep-G2 ENCSR949OEV.ZFY.Hep-G2 120 bp overlap
ZMAT3 1 dataset
ChIP HepG2 ENCFF053XGJ 253 bp overlap
ZMYM3 3 datasets
ChIP Hep-G2 ENCSR848YWD.ZMYM3.Hep-G2 193 bp overlap
ChIP HepG2 ENCFF408KTI 253 bp overlap
ChIP HepG2 ENCFF667RVD 253 bp overlap
ZNF121 3 datasets
ChIP Hep-G2 ENCSR945QEW.ZNF121.Hep-G2 228 bp overlap
ChIP HepG2 ENCFF343YSL 155 bp overlap
ChIP WTC11 ENCFF291API 197 bp overlap
ZNF142 1 dataset
ChIP HepG2 ENCFF422TCB 253 bp overlap
ZNF189 1 dataset
Motif DE_12h DE_12h-ZNF189_MA1725.2 9 bp overlap
ZNF219 1 dataset
ChIP HepG2 ENCFF266JIR 105 bp overlap
ZNF3 1 dataset
ChIP Hep-G2 ENCSR182QWU.ZNF3.Hep-G2 220 bp overlap
ZNF335 1 dataset
ChIP HEK293 ENCFF784SLD 253 bp overlap
ZNF341 2 datasets
Motif DE_12h DE_12h-ZNF341_MA1655.2 8 bp overlap
ChIP HEK293 ENCSR185FOY.ZNF341.HEK293 253 bp overlap
ZNF610 2 datasets
Motif DE_12h DE_12h-ZNF610_MA1713.2 10 bp overlap
Motif ES_0h ES_0h-ZNF610_MA1713.2 10 bp overlap
ZNF708 1 dataset
Motif DE_12h DE_12h-ZNF708_MA1730.2 9 bp overlap
ZNF761 1 dataset
ChIP HepG2 ENCFF761IOF 108 bp overlap
Zfp335 1 dataset
Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap