Enables identical protein binding activity. Predicted to be involved in positive regulation of transcription by RNA polymerase II. Located in cytoplasm and nucleoplasm. [provided by Alliance of Genome Resources, Jul 2025]
Transcription factors with Perturb-seq knockdown data for ZBED4. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = ZBED4 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of ZBED4, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr22:49,852,925–49,854,755 | 132 bp | At TSS Multiome | 864 | |
| chr22:49,917,887–49,919,285 | 64.6 kb | Distal (>10kb) Multiome | 736 | |
| chr22:49,934,630–49,935,498 | 81.6 kb | Distal (>10kb) Multiome | 298 | |
| chr22:49,935,964–49,936,517 | 82.2 kb | Distal (>10kb) Multiome | 637 | |
| chr22:49,959,889–49,961,612 | 106.6 kb | Distal (>10kb) Multiome | 843 | |
| chr22:49,961,773–49,962,968 | 108.6 kb | Distal (>10kb) Multiome | 708 | |
| chr22:49,999,173–50,000,437 | 145.8 kb | Distal (>10kb) Multiome | 237 | |
| chr22:50,030,288–50,030,739 | 176.6 kb | Distal (>10kb) Multiome | 433 |
Genomic view of the ZBED4 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.