TAF1
TATA-box binding protein associated factor 1 | DYT3/TAF1, KAT4, NSCL2, TAFII250, BA2R, CCG1, CCGS, DYT3, TAF2A

Initiation of transcription by RNA polymerase II requires the activities of more than 70 polypeptides. The protein that coordinates these activities is the basal transcription factor TFIID, which binds to the core promoter to position the polymerase properly, serves as the scaffold for assembly of the remainder of the transcription complex, and acts as a channel for regulatory signals. TFIID is composed of the TATA-binding protein (TBP) and a group of evolutionarily conserved proteins known as TBP-associated factors or TAFs. TAFs may participate in basal transcription, serve as coactivators, function in promoter recognition or modify general transcription factors (GTFs) to facilitate complex assembly and transcription initiation. This gene encodes the largest subunit of TFIID. This subunit binds to core promoter sequences encompassing the transcription start site. It also binds to activators and other transcriptional regulators, and these interactions affect the rate of transcription initiation. This subunit contains two independent protein kinase domains at the N- and C-terminals, but also possesses acetyltransferase activity and can act as a ubiquitin-activating/conjugating enzyme. Mutations in this gene result in Dystonia 3, torsion, X-linked, a dystonia-parkinsonism disorder. Alternative splicing of this gene results in multiple transcript variants. This gene is part of a complex transcription unit (TAF1/DYT3), wherein some transcript variants share exons with TAF1 as well as additional downstream DYT3 exons. [provided by RefSeq, Oct 2013]

Member of: DE-8 DE-8.1
Biological processes 79 terms
DNA binding (GO:0003677)DNA damage response (GO:0006974)DNA-templated transcription initiation (GO:0006352)MLL1 complex (GO:0071339)RNA polymerase I general transcription initiation factor activity (GO:0001181)RNA polymerase II core promoter sequence-specific DNA binding (GO:0000979)RNA polymerase II general transcription initiation factor activity (GO:0016251)RNA polymerase II general transcription initiation factor activity (GO:0016251)RNA polymerase II general transcription initiation factor activity (GO:0016251)RNA polymerase II general transcription initiation factor activity (GO:0016251)RNA polymerase II general transcription initiation factor binding (GO:0001091)RNA polymerase II preinitiation complex assembly (GO:0051123)RNA polymerase II preinitiation complex assembly (GO:0051123)RNA polymerase II preinitiation complex assembly (GO:0051123)RNA polymerase II-specific DNA-binding transcription factor binding (GO:0061629)TBP-class protein binding (GO:0017025)TBP-class protein binding (GO:0017025)TBP-class protein binding (GO:0017025)acetyl-CoA binding (GO:1905502)cellular response to ATP (GO:0071318)cellular response to UV (GO:0034644)chromatin (GO:0000785)chromatin organization (GO:0006325)chromatin remodeling (GO:0006338)histone H3K27me3 reader activity (GO:0061628)histone H4K16ac reader activity (GO:0140046)histone acetyltransferase activity (GO:0004402)histone acetyltransferase activity (GO:0004402)histone reader activity (GO:0140566)histone reader activity (GO:0140566)kinase activity (GO:0016301)mRNA transcription by RNA polymerase II (GO:0042789)midbrain development (GO:0030901)negative regulation of gene expression (GO:0010629)negative regulation of protein autoubiquitination (GO:1905524)negative regulation of signal transduction by p53 class mediator (GO:1901797)negative regulation of transcription by RNA polymerase II (GO:0000122)negative regulation of ubiquitin-dependent protein catabolic process (GO:2000059)nuclear receptor binding (GO:0016922)nucleolus (GO:0005730)nucleoplasm (GO:0005654)nucleoplasm (GO:0005654)nucleoplasm (GO:0005654)nucleus (GO:0005634)nucleus (GO:0005634)nucleus (GO:0005634)p53 binding (GO:0002039)positive regulation of androgen receptor signaling pathway (GO:0160207)positive regulation of proteasomal ubiquitin-dependent protein catabolic process (GO:0032436)positive regulation of transcription by RNA polymerase II (GO:0045944)positive regulation of transcription initiation by RNA polymerase II (GO:0060261)protein autophosphorylation (GO:0046777)protein binding (GO:0005515)protein heterodimerization activity (GO:0046982)protein kinase activity (GO:0004672)protein polyubiquitination (GO:0000209)protein serine kinase activity (GO:0106310)protein serine/threonine kinase activity (GO:0004674)protein serine/threonine kinase activity (GO:0004674)protein serine/threonine kinase activity (GO:0004674)protein stabilization (GO:0050821)protein-lysine-acetyltransferase activity (GO:0061733)regulation of cell cycle G1/S phase transition (GO:1902806)regulation of signal transduction by p53 class mediator (GO:1901796)sequence-specific DNA binding (GO:0043565)transcription by RNA polymerase II (GO:0006366)transcription by RNA polymerase II (GO:0006366)transcription factor TFIID complex (GO:0005669)transcription factor TFIID complex (GO:0005669)transcription factor TFIID complex (GO:0005669)transcription factor TFIID complex (GO:0005669)transcription initiation at RNA polymerase I promoter (GO:0006361)transcription initiation at RNA polymerase II promoter (GO:0006367)transcription initiation at RNA polymerase II promoter (GO:0006367)transcription initiation at RNA polymerase II promoter (GO:0006367)transcription regulator complex (GO:0005667)transcription regulator inhibitor activity (GO:0140416)ubiquitin conjugating enzyme activity (GO:0061631)ubiquitin-dependent protein catabolic process (GO:0006511)
Expression (TPM)
TAF1 — as a Regulated Gene

TFs regulating TAF1 0 TFs

Transcription factors with Perturb-seq knockdown data for TAF1. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = TAF1 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.

Data: Effect:
TF Mean coef Binding Outlier TF→Gene link

Elements linked to TAF1

Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of TAF1, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.

Accessibility Element Dist. to TSS Link type TFs
chrX:71,067,771–71,068,927 297.7 kb Distal (>10kb) Multiome 846
chrX:71,095,671–71,096,651 270.3 kb Distal (>10kb) Multiome 450
chrX:71,103,137–71,103,903 262.8 kb Distal (>10kb) Multiome 375
chrX:71,181,957–71,182,785 184.1 kb Distal (>10kb) Multiome 615
chrX:71,253,749–71,255,053 112.0 kb Distal (>10kb) Multiome 607
chrX:71,283,100–71,284,134 82.8 kb Distal (>10kb) Multiome 633
chrX:71,365,705–71,366,636 152 bp At TSS Multiome 578
chrX:71,532,799–71,533,342 166.7 kb Distal (>10kb) Multiome 845

Genome Browser

Genomic view of the TAF1 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.

chrX:71,057,771 – 71,543,342
Proximal 1 kb Distal 10 kb Multiome HiCAR ATAC-seq RNA-seq