Enables DNA-binding transcription repressor activity, RNA polymerase II-specific and transcription cis-regulatory region binding activity. Involved in negative regulation of transcription by RNA polymerase II and positive regulation of transcription by RNA polymerase II. Located in nucleus. [provided by Alliance of Genome Resources, Jul 2025]
Transcription factors with Perturb-seq knockdown data for ZNF263. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = ZNF263 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of ZNF263, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr16:3,003,612–3,004,589 | 279.3 kb | Distal (>10kb) Multiome | 652 | |
| chr16:3,007,583–3,008,956 | 274.9 kb | Distal (>10kb) Multiome | 514 | |
| chr16:3,009,722–3,010,376 | 273.3 kb | Distal (>10kb) Multiome | 395 | |
| chr16:3,017,242–3,018,799 | 265.2 kb | Distal (>10kb) Multiome | 451 | |
| chr16:3,019,969–3,022,268 | 263.1 kb | Distal (>10kb) Multiome | 963 | |
| chr16:3,022,890–3,024,532 | 259.2 kb | Distal (>10kb) Multiome | 933 | |
| chr16:3,027,854–3,029,038 | 255.0 kb | Distal (>10kb) Multiome | 546 | |
| chr16:3,036,222–3,037,148 | 246.5 kb | Distal (>10kb) Multiome | 256 | |
| chr16:3,045,413–3,047,408 | 237.2 kb | Distal (>10kb) Multiome | 510 | |
| chr16:3,058,226–3,060,102 | 224.0 kb | Distal (>10kb) Multiome | 769 | |
| chr16:3,098,550–3,100,475 | 183.1 kb | Distal (>10kb) Multiome | 454 | |
| chr16:3,106,146–3,106,906 | 176.7 kb | Distal (>10kb) Multiome | 851 | |
| chr16:3,123,818–3,124,940 | 159.0 kb | Distal (>10kb) Multiome | 800 | |
| chr16:3,134,425–3,135,445 | 148.4 kb | Distal (>10kb) Multiome | 752 | |
| chr16:3,149,357–3,151,137 | 132.7 kb | Distal (>10kb) Multiome | 975 | |
| chr16:3,152,009–3,153,129 | 130.6 kb | Distal (>10kb) Multiome | 889 | |
| chr16:3,156,990–3,157,742 | 126.0 kb | Distal (>10kb) Multiome | 680 | |
| chr16:3,158,260–3,159,345 | 124.5 kb | Distal (>10kb) Multiome | 764 | |
| chr16:3,171,474–3,172,591 | 111.2 kb | Distal (>10kb) Multiome | 574 | |
| chr16:3,174,125–3,174,566 | 109.1 kb | Distal (>10kb) Multiome | 371 | |
| chr16:3,175,429–3,175,953 | 107.7 kb | Distal (>10kb) Multiome | 483 | |
| chr16:3,182,514–3,183,488 | 100.5 kb | Distal (>10kb) Multiome | 690 | |
| chr16:3,187,874–3,189,822 | 93.9 kb | Distal (>10kb) Multiome | 679 | |
| chr16:3,191,282–3,192,194 | 91.6 kb | Distal (>10kb) Multiome | 509 | |
| chr16:3,234,780–3,235,610 | 48.1 kb | Distal (>10kb) Multiome | 845 | |
| chr16:3,263,988–3,264,941 | 18.8 kb | Distal (>10kb) Multiome | 923 | |
| chr16:3,282,413–3,283,892 | 279 bp | At TSS Multiome | 964 | |
| chr16:3,305,073–3,306,009 | 22.1 kb | Distal (>10kb) Multiome | 681 | |
| chr16:3,400,631–3,401,665 | 117.7 kb | Distal (>10kb) Multiome | 927 | |
| chr16:3,457,535–3,458,643 | 174.5 kb | Distal (>10kb) Multiome | 954 | |
| chr16:3,500,701–3,501,337 | 217.6 kb | Distal (>10kb) Multiome | 953 |
Genomic view of the ZNF263 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.