chr2 : 39,484,116 39,485,280
1,164 bp 235 TFs 5 linked genes
This 1.2 kb open chromatin element is linked to 5 target genes and is bound by 235 transcription factors.
Linked Genes
5 genes
Gene Expression Dist. to TSS Distance Link type
MAP4K3-DT 47.2 kb Distal Multiome
MAP4K3 47.4 kb Distal Multiome
TMEM178A 181.3 kb Distal Multiome
CDKL4 240.7 kb Distal Multiome
THUMPD2 294.6 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:39,479,116 – 39,490,280
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
235 transcription factors
Source
Cell type
ALX3 1 dataset
Motif DE_12h DE_12h-ALX3_MA0634.2 6 bp overlap
AR 2 datasets
ChIP LNCaP_SHGATA2_ETOH GSE69043.AR.LNCaP_SHGATA2_ETOH 135 bp overlap
ChIP prostate-cancer_PDX_78 GSE130408.AR.prostate-cancer_PDX_78 77 bp overlap
ARGFX 1 dataset
Motif DE_12h DE_12h-ARGFX_MA1463.2 8 bp overlap
ASCL1 1 dataset
ChIP NCI-H82 GSE69394.ASCL1.NCI-H82 77 bp overlap
ATOH7 2 datasets
Motif DE_12h DE_12h-ATOH7_MA1468.1 10 bp overlap
Motif ES_0h ES_0h-ATOH7_MA1468.1 10 bp overlap
Arid3a 2 datasets
Motif DE_12h DE_12h-Arid3a_MA0151.1 6 bp overlap
Motif ES_0h ES_0h-Arid3a_MA0151.1 6 bp overlap
Atoh1 2 datasets
Motif DE_12h DE_12h-Atoh1_MA0461.3 8 bp overlap
Motif ES_0h ES_0h-Atoh1_MA0461.3 8 bp overlap
BCL6B 1 dataset
Motif DE_12h DE_12h-BCL6B_MA0731.1 17 bp overlap
BHLHA15 2 datasets
Motif DE_12h DE_12h-BHLHA15_MA0607.2 10 bp overlap
Motif ES_0h ES_0h-BHLHA15_MA0607.2 10 bp overlap
BHLHE22 2 datasets
Motif DE_12h DE_12h-BHLHE22_MA0818.2 10 bp overlap
Motif ES_0h ES_0h-BHLHE22_MA0818.2 10 bp overlap
BHLHE23 2 datasets
Motif DE_12h DE_12h-BHLHE23_MA0817.2 10 bp overlap
Motif ES_0h ES_0h-BHLHE23_MA0817.2 10 bp overlap
BNC2 2 datasets
ChIP SK-N-SH ENCFF174EMC 205 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR754GYI.BNC2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 140 bp overlap
BRD4 3 datasets
ChIP PC-3 GSE137207.BRD4.PC-3 91 bp overlap
ChIP PC-3_GDC-R_SAHA GSE137207.BRD4.PC-3_GDC-R_SAHA 458 bp overlap
ChIP SW480 GSE110473.BRD4.SW480 383 bp overlap
CDX1 1 dataset
Motif DE_12h DE_12h-CDX1_MA0878.3 10 bp overlap
CDX2 1 dataset
Motif DE_12h DE_12h-CDX2_MA0465.3 8 bp overlap
CDX4 1 dataset
Motif DE_12h DE_12h-CDX4_MA1473.2 9 bp overlap
CHD2 1 dataset
ChIP SK-N-SH ENCSR274SLQ.CHD2.SK-N-SH 365 bp overlap
CREB5 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR758GOA.CREB5.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 440 bp overlap
CTCF 16 datasets
ChIP A-549 ENCSR000AUF.CTCF.A-549 310 bp overlap
Motif DE_12h DE_12h-CTCF_MA1930.2 33 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_1 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_1 185 bp overlap
ChIP HAP1_clone21_TSS-CRISPR GSE152721.CTCF.HAP1_clone21_TSS-CRISPR 203 bp overlap
ChIP HeLa GSE126990.CTCF.HeLa 170 bp overlap
ChIP HeLa-Kyoto GSE138405.CTCF.HeLa-Kyoto 170 bp overlap
ChIP HeLa-Kyoto GSE102884.CTCF.HeLa-Kyoto 172 bp overlap
ChIP HeLa-Kyoto_WAPL-depleted GSE102884.CTCF.HeLa-Kyoto_WAPL-depleted 226 bp overlap
ChIP MCF-7 ENCSR000DMR.CTCF.MCF-7 171 bp overlap
ChIP MCF-7 GSE137216.CTCF.MCF-7 236 bp overlap
ChIP MCF-7 ENCSR560BUE.CTCF.MCF-7 308 bp overlap
ChIP MCF-7L_t0 GSE108787.CTCF.MCF-7L_t0 270 bp overlap
ChIP VCaP ENCFF858YQT 515 bp overlap
ChIP VCaP ENCSR265ARE.CTCF.VCaP 413 bp overlap
ChIP VCaP_ETOH GSE84432.CTCF.VCaP_ETOH 146 bp overlap
ChIP hepatocyte ERP000395.CTCF.hepatocyte 223 bp overlap
CTNNB1 1 dataset
ChIP hESC_YAP-_activinA_15h GSE99202.CTNNB1.hESC_YAP-_activinA_15h 312 bp overlap
DRGX 1 dataset
Motif DE_12h DE_12h-DRGX_MA1481.2 6 bp overlap
DUX4 3 datasets
Motif DE_12h DE_12h-DUX4_MA0468.1 11 bp overlap
ChIP HEK293 GSE75791.DUX4.HEK293 252 bp overlap
ChIP WA01 GSE94322.DUX4.WA01 271 bp overlap
EBF3 1 dataset
Motif DE_12h DE_12h-EBF3_MA1637.2 9 bp overlap
EHF 1 dataset
Motif DE_12h DE_12h-EHF_MA0598.4 9 bp overlap
ELF1 1 dataset
Motif DE_12h DE_12h-ELF1_MA0473.4 9 bp overlap
EMX1 1 dataset
Motif DE_12h DE_12h-EMX1_MA0612.3 6 bp overlap
EMX2 1 dataset
Motif DE_12h DE_12h-EMX2_MA0886.2 6 bp overlap
EN1 1 dataset
Motif DE_12h DE_12h-EN1_MA0027.3 6 bp overlap
EP300 2 datasets
ChIP SK-N-SH ENCFF829RWA 313 bp overlap
ChIP SK-N-SH ENCSR000EHV.EP300.SK-N-SH 99 bp overlap
ERF::SREBF2 2 datasets
Motif DE_12h DE_12h-ERFSREBF2_MA1939.2 16 bp overlap
Motif ES_0h ES_0h-ERFSREBF2_MA1939.2 16 bp overlap
ERG 2 datasets
ChIP VCaP GSE49091.ERG.VCaP 126 bp overlap
ChIP aortic-endothelial-cell_D40 GSE139377.ERG.aortic-endothelial-cell_D40 173 bp overlap
ESR1 11 datasets
ChIP MCF-7 GSE119057.ESR1.MCF-7 169 bp overlap
ChIP MCF-7_D538G GSE148277.ESR1.MCF-7_D538G 255 bp overlap
ChIP MCF-7_D538G_DMSO GSE148277.ESR1.MCF-7_D538G_DMSO 212 bp overlap
ChIP MCF-7_E2+4OHT_SRC-3 GSE119702.ESR1.MCF-7_E2+4OHT_SRC-3 394 bp overlap
ChIP MCF-7_ER_t10 GSE119057.ESR1.MCF-7_ER_t10 210 bp overlap
ChIP MCF-7_ER_t20 GSE119057.ESR1.MCF-7_ER_t20 196 bp overlap
ChIP MCF-7_ER_t30 GSE119057.ESR1.MCF-7_ER_t30 166 bp overlap
ChIP MCF-7_ER_t50 GSE119057.ESR1.MCF-7_ER_t50 170 bp overlap
ChIP MCF-7_ER_t70 GSE119057.ESR1.MCF-7_ER_t70 193 bp overlap
ChIP MCF-7_SRC3_OHT GSE119702.ESR1.MCF-7_SRC3_OHT 394 bp overlap
ChIP breast-cancer_3487 GSE126004.ESR1.breast-cancer_3487 232 bp overlap
ESRRG 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR023KKB.ESRRG.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 84 bp overlap
ESX1 1 dataset
Motif DE_12h DE_12h-ESX1_MA0644.3 7 bp overlap
ETS1 2 datasets
ChIP GM23338 ENCFF701IZH 377 bp overlap
ChIP HUVEC-C_VEGF_12H GSE41166.ETS1.HUVEC-C_VEGF_12H 164 bp overlap
ETV1 1 dataset
Motif DE_12h DE_12h-ETV1_MA0761.3 9 bp overlap
EVX1 1 dataset
Motif DE_12h DE_12h-EVX1_MA0887.2 6 bp overlap
EVX2 1 dataset
Motif DE_12h DE_12h-EVX2_MA0888.2 6 bp overlap
Ebf2 1 dataset
Motif DE_12h DE_12h-Ebf2_MA1604.2 9 bp overlap
Erg 1 dataset
Motif DE_12h DE_12h-Erg_MA0474.4 10 bp overlap
FIGLA 1 dataset
Motif DE_12h DE_12h-FIGLA_MA0820.2 6 bp overlap
FOXA1 26 datasets
ChIP LNCaP_ETOH24H GSE58428.FOXA1.LNCaP_ETOH24H 348 bp overlap
ChIP LS180 GSE140533.FOXA1.LS180 86 bp overlap
ChIP MCF-7 GSE140185.FOXA1.MCF-7 264 bp overlap
ChIP MCF-7 GSE81714.FOXA1.MCF-7 330 bp overlap
ChIP MCF-7 GSE72249.FOXA1.MCF-7 228 bp overlap
ChIP MCF-7 ERP001226.FOXA1.MCF-7 219 bp overlap
ChIP MCF-7 GSE80808.FOXA1.MCF-7 231 bp overlap
ChIP MCF-7 GSE59530.FOXA1.MCF-7 134 bp overlap
ChIP MCF-7 ERP000380.FOXA1.MCF-7 131 bp overlap
ChIP MCF-7_4OH-Tam GSE75201.FOXA1.MCF-7_4OH-Tam 152 bp overlap
ChIP MCF-7_E2 GSE72249.FOXA1.MCF-7_E2 286 bp overlap
ChIP MCF-7_E2 GSE23852.FOXA1.MCF-7_E2 177 bp overlap
ChIP MCF-7_E2 GSE60270.FOXA1.MCF-7_E2 179 bp overlap
ChIP MCF-7_E2_TNF GSE59530.FOXA1.MCF-7_E2_TNF 169 bp overlap
ChIP MCF-7_ETOH GSE23852.FOXA1.MCF-7_ETOH 141 bp overlap
ChIP MCF-7_JC4695 GSE126004.FOXA1.MCF-7_JC4695 230 bp overlap
ChIP MCF-7_estrogen_ab1 GSE112969.FOXA1.MCF-7_estrogen_ab1 295 bp overlap
ChIP MCF-7_estrogen_ab2 GSE112969.FOXA1.MCF-7_estrogen_ab2 455 bp overlap
ChIP MCF-7_shNR2F2 GSE132432.FOXA1.MCF-7_shNR2F2 469 bp overlap
ChIP MCF-7_vehicle_ab1 GSE112969.FOXA1.MCF-7_vehicle_ab1 265 bp overlap
ChIP MCF-7_vehicle_ab2 GSE112969.FOXA1.MCF-7_vehicle_ab2 443 bp overlap
ChIP T-47D_8h GSE137579.FOXA1.T-47D_8h 161 bp overlap
ChIP ZR-75-1_vehicle_ab2 GSE112969.FOXA1.ZR-75-1_vehicle_ab2 278 bp overlap
ChIP ZR751 GSE72249.FOXA1.ZR751 237 bp overlap
ChIP ZR751_E2 GSE72249.FOXA1.ZR751_E2 240 bp overlap
ChIP breast-cancer_Veh-2856 GSE128018.FOXA1.breast-cancer_Veh-2856 297 bp overlap
FOXC1 1 dataset
Motif DE_12h DE_12h-FOXC1_MA0032.2 11 bp overlap
FOXC2 1 dataset
Motif DE_12h DE_12h-FOXC2_MA0846.2 11 bp overlap
FOXD2 1 dataset
Motif DE_12h DE_12h-FOXD2_MA0847.4 11 bp overlap
FOXD3 1 dataset
Motif DE_12h DE_12h-FOXD3_MA0041.3 14 bp overlap
FOXE1 1 dataset
Motif DE_12h DE_12h-FOXE1_MA1487.3 12 bp overlap
FOXP4 2 datasets
ChIP WTC11 ENCFF708TAF 377 bp overlap
ChIP WTC11 ENCFF708TAF 377 bp overlap
GABPA 1 dataset
Motif DE_12h DE_12h-GABPA_MA0062.4 10 bp overlap
GATA2 8 datasets
ChIP LNCaP GSE38391.GATA2.LNCaP 256 bp overlap
ChIP LNCaP GSE52725.GATA2.LNCaP 256 bp overlap
ChIP LNCaP_CSFCS GSE69043.GATA2.LNCaP_CSFCS 168 bp overlap
ChIP LNCaP_FBS GSE69043.GATA2.LNCaP_FBS 216 bp overlap
ChIP SH-SY5Y ENCFF485YIB 405 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 443 bp overlap
ChIP SK-N-SH ENCFF764OZD 250 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 317 bp overlap
GATA3 14 datasets
ChIP MCF-7 ENCFF437NQS 371 bp overlap
ChIP MCF-7 GSE133072.GATA3.MCF-7 268 bp overlap
ChIP MCF-7 GSE122847.GATA3.MCF-7 212 bp overlap
ChIP MCF-7 GSE51274.GATA3.MCF-7 220 bp overlap
ChIP MCF-7_E2 GSE81510.GATA3.MCF-7_E2 169 bp overlap
ChIP MCF-7_E2 GSE40129.GATA3.MCF-7_E2 165 bp overlap
ChIP MCF-7_E2 GSE29073.GATA3.MCF-7_E2 113 bp overlap
ChIP MCF-7_E2_Dex GSE81510.GATA3.MCF-7_E2_Dex 168 bp overlap
ChIP SH-SY5Y ENCFF475HYF 357 bp overlap
ChIP SH-SY5Y ENCSR000EXZ.GATA3.SH-SY5Y 429 bp overlap
ChIP SK-N-SH ENCFF040SSB 156 bp overlap
ChIP SK-N-SH ENCFF040SSB 195 bp overlap
ChIP T-47D ENCSR000BMX.GATA3.T-47D 216 bp overlap
ChIP breast_tumor_Male_21 GSE104399.GATA3.breast_tumor_Male_21 279 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 303 bp overlap
ChIP DE DE-GATA4-2 301 bp overlap
ChIP foregut GSE117136.GATA4.foregut 258 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 204 bp overlap
GATA6 15 datasets
ChIP DE DE-GATA6-1 310 bp overlap
ChIP DE DE-GATA6-2 298 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 266 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 615 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 410 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 455 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 277 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 286 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 224 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 477 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 537 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 277 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 587 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 273 bp overlap
ChIP foregut GSE117136.GATA6.foregut 279 bp overlap
GFI1 3 datasets
Motif DE_12h DE_12h-GFI1_MA0038.3 11 bp overlap
Motif DE_12h DE_12h-GFI1_MA0038.3 11 bp overlap
Motif ES_0h ES_0h-GFI1_MA0038.3 11 bp overlap
GSX1 1 dataset
Motif DE_12h DE_12h-GSX1_MA0892.2 6 bp overlap
GSX2 1 dataset
Motif DE_12h DE_12h-GSX2_MA0893.3 7 bp overlap
Gfi1B 1 dataset
Motif DE_12h DE_12h-Gfi1B_MA0483.2 10 bp overlap
HAND2 3 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 274 bp overlap
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 111 bp overlap
Motif DE_12h DE_12h-HAND2_MA1638.2 6 bp overlap
HMGB2 1 dataset
ChIP HUVEC-C GSE98245.HMGB2.HUVEC-C 326 bp overlap
HOXA1 1 dataset
Motif DE_12h DE_12h-HOXA1_MA1495.2 6 bp overlap
HOXA10 1 dataset
Motif DE_12h DE_12h-HOXA10_MA0899.2 9 bp overlap
HOXA2 1 dataset
Motif DE_12h DE_12h-HOXA2_MA0900.3 6 bp overlap
HOXA3 1 dataset
Motif DE_12h DE_12h-HOXA3_MA2119.1 7 bp overlap
HOXA5 1 dataset
Motif DE_12h DE_12h-HOXA5_MA0158.2 8 bp overlap
HOXA6 1 dataset
Motif DE_12h DE_12h-HOXA6_MA1497.2 7 bp overlap
HOXB1 1 dataset
Motif DE_12h DE_12h-HOXB1_MA2093.1 7 bp overlap
HOXB13 1 dataset
ChIP prostate_P29_T GSE130408.HOXB13.prostate_P29_T 175 bp overlap
HOXB2 1 dataset
Motif DE_12h DE_12h-HOXB2_MA0902.3 6 bp overlap
HOXB3 1 dataset
Motif DE_12h DE_12h-HOXB3_MA0903.2 6 bp overlap
HOXB5 1 dataset
Motif DE_12h DE_12h-HOXB5_MA0904.3 6 bp overlap
HOXB6 1 dataset
Motif DE_12h DE_12h-HOXB6_MA1500.2 7 bp overlap
HOXB7 1 dataset
Motif DE_12h DE_12h-HOXB7_MA1501.2 7 bp overlap
HOXB8 1 dataset
Motif DE_12h DE_12h-HOXB8_MA1502.2 7 bp overlap
HOXC8 1 dataset
Motif DE_12h DE_12h-HOXC8_MA1505.2 6 bp overlap
HOXD3 1 dataset
Motif DE_12h DE_12h-HOXD3_MA0912.2 8 bp overlap
HOXD8 1 dataset
Motif DE_12h DE_12h-HOXD8_MA0910.3 7 bp overlap
HOXD9 1 dataset
Motif DE_12h DE_12h-HOXD9_MA0913.3 9 bp overlap
Hmga1 2 datasets
Motif DE_12h DE_12h-Hmga1_MA2124.1 8 bp overlap
Motif ES_0h ES_0h-Hmga1_MA2124.1 8 bp overlap
Hmx2 1 dataset
Motif DE_12h DE_12h-Hmx2_MA0897.2 15 bp overlap
Hnf1A 1 dataset
Motif DE_12h DE_12h-Hnf1A_MA1991.2 10 bp overlap
IKZF1 2 datasets
Motif DE_12h DE_12h-IKZF1_MA1508.2 8 bp overlap
ChIP K-562 ENCSR395HWC.IKZF1.K-562 452 bp overlap
IKZF2 1 dataset
Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap
IRF2 1 dataset
Motif DE_12h DE_12h-IRF2_MA0051.2 16 bp overlap
IRF3 1 dataset
Motif DE_12h DE_12h-IRF3_MA1418.2 17 bp overlap
IRF7 1 dataset
Motif DE_12h DE_12h-IRF7_MA0772.2 13 bp overlap
ISL1 2 datasets
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 140 bp overlap
ChIP SK-N-SH ENCFF285GEQ 64 bp overlap
ISX 1 dataset
Motif DE_12h DE_12h-ISX_MA0654.2 6 bp overlap
Ikzf3 2 datasets
Motif DE_12h DE_12h-Ikzf3_MA1992.2 9 bp overlap
Motif DE_12h DE_12h-Ikzf3_MA1992.2 9 bp overlap
JUN 2 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 313 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 504 bp overlap
KDM1A 2 datasets
ChIP SH-SY5Y_B0 GSE58258.KDM1A.SH-SY5Y_B0 324 bp overlap
ChIP SH-SY5Y_B3 GSE58258.KDM1A.SH-SY5Y_B3 373 bp overlap
LHX5 1 dataset
Motif DE_12h DE_12h-LHX5_MA1519.2 7 bp overlap
LHX6 1 dataset
Motif DE_12h DE_12h-LHX6_MA0658.2 8 bp overlap
LMX1A 1 dataset
Motif DE_12h DE_12h-LMX1A_MA0702.3 7 bp overlap
LMX1B 1 dataset
Motif DE_12h DE_12h-LMX1B_MA0703.3 8 bp overlap
Lef1 1 dataset
Motif DE_12h DE_12h-Lef1_MA0768.3 8 bp overlap
Lhx1 1 dataset
Motif DE_12h DE_12h-Lhx1_MA1518.3 10 bp overlap
Lhx4 1 dataset
Motif DE_12h DE_12h-Lhx4_MA0704.2 6 bp overlap
Lhx8 1 dataset
Motif DE_12h DE_12h-Lhx8_MA0705.2 6 bp overlap
MEIS1 1 dataset
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
MEOX1 1 dataset
Motif DE_12h DE_12h-MEOX1_MA0661.2 7 bp overlap
MEOX2 1 dataset
Motif DE_12h DE_12h-MEOX2_MA0706.2 7 bp overlap
MIXL1 1 dataset
Motif DE_12h DE_12h-MIXL1_MA0662.2 6 bp overlap
MNX1 1 dataset
Motif DE_12h DE_12h-MNX1_MA0707.3 6 bp overlap
MORC2 1 dataset
ChIP H9 GSE95374.MORC2.H9 430 bp overlap
MTF1 1 dataset
Motif DE_12h DE_12h-MTF1_MA0863.1 14 bp overlap
MXI1 1 dataset
Motif DE_12h DE_12h-MXI1_MA1108.3 6 bp overlap
MYC 2 datasets
ChIP P493-6_scramble-shRNA GSE101853.MYC.P493-6_scramble-shRNA 174 bp overlap
ChIP SK-N-AS GSE138295.MYC.SK-N-AS 208 bp overlap
Msgn1 2 datasets
Motif DE_12h DE_12h-Msgn1_MA1524.3 10 bp overlap
Motif ES_0h ES_0h-Msgn1_MA1524.3 10 bp overlap
NANOG 8 datasets
ChIP GM23338 ENCFF065NZG 238 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 476 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 1158 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 508 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 1159 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 723 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 556 bp overlap
ChIP hESC GSE18292.NANOG.hESC 190 bp overlap
NEUROG1 2 datasets
Motif DE_12h DE_12h-NEUROG1_MA0623.2 10 bp overlap
Motif ES_0h ES_0h-NEUROG1_MA0623.2 10 bp overlap
NFATC3 1 dataset
Motif DE_12h DE_12h-NFATC3_MA0625.3 6 bp overlap
NFIA 1 dataset
Motif DE_12h DE_12h-NFIA_MA0670.2 6 bp overlap
NFIC 5 datasets
Motif DE_12h DE_12h-NFIC_MA0161.3 7 bp overlap
ChIP K-562 ENCSR796ITY.NFIC.K-562 227 bp overlap
ChIP K562 ENCFF167YID 457 bp overlap
ChIP SK-N-SH ENCFF965AKM 357 bp overlap
ChIP SK-N-SH ENCSR000BSV.NFIC.SK-N-SH 164 bp overlap
NFIX 1 dataset
Motif DE_12h DE_12h-NFIX_MA0671.2 6 bp overlap
NFYB 2 datasets
Motif DE_12h DE_12h-NFYB_MA0502.3 9 bp overlap
Motif ES_0h ES_0h-NFYB_MA0502.3 9 bp overlap
NIPBL 3 datasets
ChIP hESC_WNT3A GSE64758.NIPBL.hESC_WNT3A 426 bp overlap
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 479 bp overlap
ChIP hESC_activin GSE64758.NIPBL.hESC_activin 222 bp overlap
NKX6-1 1 dataset
Motif DE_12h DE_12h-NKX6-1_MA0674.2 7 bp overlap
NKX6-2 1 dataset
Motif DE_12h DE_12h-NKX6-2_MA0675.2 6 bp overlap
NOTO 1 dataset
Motif DE_12h DE_12h-NOTO_MA0710.2 7 bp overlap
NR2F2 2 datasets
ChIP liver ENCFF565JGD 160 bp overlap
ChIP liver ENCFF565JGD 439 bp overlap
NR3C1 1 dataset
ChIP MDA-MB-453 GSE152203.NR3C1.MDA-MB-453 165 bp overlap
Nfatc1 1 dataset
Motif DE_12h DE_12h-Nfatc1_MA0624.3 6 bp overlap
OLIG1 2 datasets
Motif DE_12h DE_12h-OLIG1_MA0826.1 10 bp overlap
Motif ES_0h ES_0h-OLIG1_MA0826.1 10 bp overlap
OLIG2 2 datasets
Motif DE_12h DE_12h-OLIG2_MA0678.1 10 bp overlap
Motif ES_0h ES_0h-OLIG2_MA0678.1 10 bp overlap
OLIG3 2 datasets
Motif DE_12h DE_12h-OLIG3_MA0827.1 10 bp overlap
Motif ES_0h ES_0h-OLIG3_MA0827.1 10 bp overlap
ONECUT2 1 dataset
ChIP PC-3_normoxia GSE106305.ONECUT2.PC-3_normoxia 64 bp overlap
PAX5 2 datasets
ChIP NALM-6 GSE126300.PAX5.NALM-6 259 bp overlap
ChIP NALM-6 GSE115764.PAX5.NALM-6 166 bp overlap
PBX1 1 dataset
Motif DE_12h DE_12h-PBX1_MA0070.2 9 bp overlap
PBX3 2 datasets
Motif DE_12h DE_12h-PBX3_MA1114.2 11 bp overlap
ChIP SK-N-SH ENCFF876BMC 317 bp overlap
PDX1 2 datasets
Motif DE_12h DE_12h-PDX1_MA0132.3 6 bp overlap
ChIP islet ERP001456.PDX1.islet 57 bp overlap
PHOX2A 2 datasets
Motif DE_12h DE_12h-PHOX2A_MA0713.1 11 bp overlap
Motif ES_0h ES_0h-PHOX2A_MA0713.1 11 bp overlap
PHOX2B 1 dataset
ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 124 bp overlap
PITX3 2 datasets
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 362 bp overlap
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 513 bp overlap
PKNOX1 4 datasets
Motif DE_12h DE_12h-PKNOX1_MA0782.3 10 bp overlap
ChIP K-562 ENCSR115SMW.PKNOX1.K-562 243 bp overlap
ChIP MCF-7 ENCFF116OCS 411 bp overlap
ChIP MCF-7 ENCSR986XYK.PKNOX1.MCF-7 212 bp overlap
PKNOX2 1 dataset
Motif DE_12h DE_12h-PKNOX2_MA0783.1 12 bp overlap
PLAG1 1 dataset
Motif DE_12h DE_12h-PLAG1_MA0163.1 14 bp overlap
POU2F1 2 datasets
Motif DE_12h DE_12h-POU2F1_MA0785.2 9 bp overlap
Motif ES_0h ES_0h-POU2F1_MA0785.2 9 bp overlap
POU2F1::SOX2 2 datasets
Motif DE_12h DE_12h-POU2F1SOX2_MA1962.1 17 bp overlap
Motif ES_0h ES_0h-POU2F1SOX2_MA1962.1 17 bp overlap
POU2F2 1 dataset
Motif DE_12h DE_12h-POU2F2_MA0507.3 13 bp overlap
POU3F2 1 dataset
Motif DE_12h DE_12h-POU3F2_MA0787.1 12 bp overlap
POU5F1 7 datasets
Motif DE_12h DE_12h-POU5F1_MA1115.2 7 bp overlap
Motif ES_0h ES_0h-POU5F1_MA1115.2 7 bp overlap
ChIP GM23338 ENCFF333SNB 311 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 1056 bp overlap
ChIP NCCIT GSE36134.POU5F1.NCCIT 343 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 299 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 148 bp overlap
POU5F1B 2 datasets
Motif DE_12h DE_12h-POU5F1B_MA0792.1 9 bp overlap
Motif ES_0h ES_0h-POU5F1B_MA0792.1 9 bp overlap
POU6F1 1 dataset
Motif DE_12h DE_12h-POU6F1_MA0628.2 6 bp overlap
POU6F2 1 dataset
Motif DE_12h DE_12h-POU6F2_MA0793.2 9 bp overlap
PPARG 1 dataset
ChIP HUVEC-C_DMSO_HYPO GSE50144.PPARG.HUVEC-C_DMSO_HYPO 147 bp overlap
PROP1 2 datasets
Motif DE_12h DE_12h-PROP1_MA0715.1 11 bp overlap
Motif ES_0h ES_0h-PROP1_MA0715.1 11 bp overlap
PRRX1 1 dataset
Motif DE_12h DE_12h-PRRX1_MA0716.2 6 bp overlap
Plagl1 2 datasets
Motif DE_12h DE_12h-Plagl1_MA1615.2 8 bp overlap
Motif ES_0h ES_0h-Plagl1_MA1615.2 8 bp overlap
Pou5f1::Sox2 2 datasets
Motif DE_12h DE_12h-Pou5f1Sox2_MA0142.1 15 bp overlap
Motif ES_0h ES_0h-Pou5f1Sox2_MA0142.1 15 bp overlap
Prdm15 2 datasets
Motif DE_12h DE_12h-Prdm15_MA1616.2 11 bp overlap
Motif ES_0h ES_0h-Prdm15_MA1616.2 11 bp overlap
RAD21 4 datasets
ChIP HUVEC-C_hypoxia GSE94872.RAD21.HUVEC-C_hypoxia 157 bp overlap
ChIP MCF-7 ENCSR703TNG.RAD21.MCF-7 154 bp overlap
ChIP SK-N-SH ENCFF747MAS 251 bp overlap
ChIP liver ENCFF522JHE 401 bp overlap
RAX2 1 dataset
Motif DE_12h DE_12h-RAX2_MA0717.2 6 bp overlap
RCOR1 2 datasets
ChIP SK-N-SH ENCFF518EXB 202 bp overlap
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 355 bp overlap
RELA 7 datasets
ChIP aortic-endothelial-cell_IL1B_D13 GSE139377.RELA.aortic-endothelial-cell_IL1B_D13 175 bp overlap
ChIP aortic-endothelial-cell_IL1B_D2 GSE139377.RELA.aortic-endothelial-cell_IL1B_D2 221 bp overlap
ChIP aortic-endothelial-cell_IL1B_D26 GSE139377.RELA.aortic-endothelial-cell_IL1B_D26 168 bp overlap
ChIP aortic-endothelial-cell_IL1B_D33 GSE139377.RELA.aortic-endothelial-cell_IL1B_D33 140 bp overlap
ChIP aortic-endothelial-cell_IL1B_D45 GSE139377.RELA.aortic-endothelial-cell_IL1B_D45 77 bp overlap
ChIP aortic-endothelial-cell_IL1B_D45 GSE139377.RELA.aortic-endothelial-cell_IL1B_D45 230 bp overlap
ChIP aortic-endothelial-cell_IL1B_D47 GSE139377.RELA.aortic-endothelial-cell_IL1B_D47 163 bp overlap
RORB 1 dataset
Motif DE_12h DE_12h-RORB_MA1150.2 10 bp overlap
RORC 1 dataset
Motif DE_12h DE_12h-RORC_MA1151.2 10 bp overlap
RUNX1 1 dataset
ChIP NALM-6 GSE126300.RUNX1.NALM-6 201 bp overlap
Rhox11 1 dataset
Motif DE_12h DE_12h-Rhox11_MA0629.2 9 bp overlap
SHOX 1 dataset
Motif DE_12h DE_12h-SHOX_MA0630.2 6 bp overlap
SMAD2-3 6 datasets
ChIP HUES-8 GSE109524.SMAD2-3.HUES-8 307 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 301 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 263 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 661 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 244 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 590 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 600 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 257 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 560 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 240 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 336 bp overlap
SMAD3 1 dataset
ChIP hESC GSE75297.SMAD3.hESC 190 bp overlap
SMARCA4 6 datasets
ChIP 501-mel_SHCTR GSE61965.SMARCA4.501-mel_SHCTR 247 bp overlap
ChIP 501-mel_SHMITF GSE61965.SMARCA4.501-mel_SHMITF 502 bp overlap
ChIP 501-mel_SHSOX10 GSE61965.SMARCA4.501-mel_SHSOX10 1164 bp overlap
ChIP A-549_AG15685 GSE132290.SMARCA4.A-549_AG15685 235 bp overlap
ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 348 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 455 bp overlap
SMARCC1 2 datasets
ChIP DE_D1 S15-DE-d1-BAF155-exp1 271 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 238 bp overlap
SMC1 2 datasets
ChIP HCAEC GSE101921.SMC1.HCAEC 727 bp overlap
ChIP HCAEC GSE101921.SMC1.HCAEC 358 bp overlap
SMC1A 1 dataset
ChIP MCF-7_EtOH GSE115602.SMC1A.MCF-7_EtOH 158 bp overlap
SOX11 1 dataset
ChIP GRANT-A519 GSE52146.SOX11.GRANT-A519 90 bp overlap
SOX14 1 dataset
Motif DE_12h DE_12h-SOX14_MA1562.2 9 bp overlap
SOX18 1 dataset
Motif DE_12h DE_12h-SOX18_MA1563.2 8 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 393 bp overlap
SP4 1 dataset
ChIP HEK293 GSE76494.SP4.HEK293 302 bp overlap
SRY 1 dataset
Motif DE_12h DE_12h-SRY_MA0084.2 7 bp overlap
STAG1 2 datasets
ChIP HeLa GSE126990.STAG1.HeLa 180 bp overlap
ChIP HeLa-Kyoto GSE138405.STAG1.HeLa-Kyoto 180 bp overlap
STAT1::STAT2 2 datasets
Motif DE_12h DE_12h-STAT1STAT2_MA0517.2 13 bp overlap
Motif DE_12h DE_12h-STAT1STAT2_MA0517.2 13 bp overlap
STAT3 2 datasets
ChIP MCF-7_jc5838 GSE126004.STAT3.MCF-7_jc5838 316 bp overlap
ChIP MCF-7_jc5843 GSE126004.STAT3.MCF-7_jc5843 225 bp overlap
Shox2 1 dataset
Motif DE_12h DE_12h-Shox2_MA0720.2 6 bp overlap
Spz1 1 dataset
Motif DE_12h DE_12h-Spz1_MA0111.1 11 bp overlap
Stat6 1 dataset
Motif DE_12h DE_12h-Stat6_MA0520.2 10 bp overlap
TCF12 1 dataset
ChIP SK-N-SH ENCFF147AHB 391 bp overlap
TCF21 2 datasets
Motif DE_12h DE_12h-TCF21_MA1568.2 10 bp overlap
Motif ES_0h ES_0h-TCF21_MA1568.2 10 bp overlap
TCF7 1 dataset
Motif DE_12h DE_12h-TCF7_MA0769.3 7 bp overlap
TCF7L1 1 dataset
Motif DE_12h DE_12h-TCF7L1_MA1421.1 12 bp overlap
TCF7L2 3 datasets
Motif DE_12h DE_12h-TCF7L2_MA0523.2 9 bp overlap
ChIP MCF-7 ENCSR000EWT.TCF7L2.MCF-7 267 bp overlap
ChIP hepatocellular-carcinoma-cell_420 GSE138781.TCF7L2.hepatocellular-carcinoma-cell_420 116 bp overlap
TEAD1 1 dataset
ChIP WTC11 ENCFF502QUV 405 bp overlap
TEAD4 4 datasets
ChIP BE2C GSE84389.TEAD4.BE2C 89 bp overlap
ChIP MCF-7_BLRP_WT_Veh GSE125594.TEAD4.MCF-7_BLRP_WT_Veh 269 bp overlap
ChIP MCF-7_E2 GSE125594.TEAD4.MCF-7_E2 217 bp overlap
ChIP SK-N-BE2 GSE84389.TEAD4.SK-N-BE2 89 bp overlap
TFAP2B 2 datasets
ChIP SK-N-SH ENCFF869XXQ 291 bp overlap
ChIP SK-N-SH ENCFF869XXQ 203 bp overlap
TFAP2C 2 datasets
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 244 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 283 bp overlap
TGIF2 1 dataset
Motif DE_12h DE_12h-TGIF2_MA0797.1 12 bp overlap
TLX2 1 dataset
Motif DE_12h DE_12h-TLX2_MA1577.2 6 bp overlap
TRIM28 1 dataset
ChIP hESC GSE115387.TRIM28.hESC 197 bp overlap
TRPS1 1 dataset
ChIP MCF-7 GSE133072.TRPS1.MCF-7 165 bp overlap
TSHZ2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR282NLQ.TSHZ2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 106 bp overlap
UNCX 1 dataset
Motif DE_12h DE_12h-UNCX_MA0721.2 6 bp overlap
VAX1 1 dataset
Motif DE_12h DE_12h-VAX1_MA0722.2 7 bp overlap
VAX2 1 dataset
Motif DE_12h DE_12h-VAX2_MA0723.3 6 bp overlap
VSX1 1 dataset
Motif DE_12h DE_12h-VSX1_MA0725.2 7 bp overlap
VSX2 1 dataset
Motif DE_12h DE_12h-VSX2_MA0726.2 7 bp overlap
Yy1 1 dataset
Motif DE_12h DE_12h-Yy1_MA0095.4 8 bp overlap
ZBTB11 1 dataset
Motif DE_12h DE_12h-ZBTB11_MA2329.1 9 bp overlap
ZBTB18 1 dataset
Motif DE_12h DE_12h-ZBTB18_MA0698.2 11 bp overlap
ZBTB26 1 dataset
Motif DE_12h DE_12h-ZBTB26_MA1579.2 8 bp overlap
ZEB1 1 dataset
Motif DE_12h DE_12h-ZEB1_MA0103.4 6 bp overlap
ZNF148 2 datasets
Motif DE_12h DE_12h-ZNF148_MA1653.2 10 bp overlap
Motif ES_0h ES_0h-ZNF148_MA1653.2 10 bp overlap
ZNF175 1 dataset
Motif DE_12h DE_12h-ZNF175_MA2332.1 9 bp overlap
ZNF184 3 datasets
Motif DE_12h DE_12h-ZNF184_MA2120.1 13 bp overlap
ChIP WTC11 ENCFF352POG 216 bp overlap
ChIP WTC11 ENCFF352POG 497 bp overlap
ZNF207 1 dataset
ChIP WA09 GSE118632.ZNF207.WA09 285 bp overlap
ZNF281 2 datasets
Motif DE_12h DE_12h-ZNF281_MA1630.3 10 bp overlap
Motif ES_0h ES_0h-ZNF281_MA1630.3 10 bp overlap
ZNF331 1 dataset
Motif DE_12h DE_12h-ZNF331_MA1726.2 10 bp overlap
ZNF467 1 dataset
ChIP HEK293 GSE76494.ZNF467.HEK293 213 bp overlap
ZNF530 2 datasets
Motif DE_12h DE_12h-ZNF530_MA1981.2 14 bp overlap
Motif ES_0h ES_0h-ZNF530_MA1981.2 14 bp overlap
ZNF558 1 dataset
Motif DE_12h DE_12h-ZNF558_MA2335.1 29 bp overlap
ZNF652 1 dataset
Motif DE_12h DE_12h-ZNF652_MA1657.2 9 bp overlap
ZNF677 1 dataset
Motif DE_12h DE_12h-ZNF677_MA2101.1 12 bp overlap
ZNF680 1 dataset
Motif DE_12h DE_12h-ZNF680_MA1729.2 11 bp overlap
ZNF70 1 dataset
ChIP SK-N-SH ENCFF833ACX 153 bp overlap
ZNF75A 1 dataset
Motif DE_12h DE_12h-ZNF75A_MA2097.1 12 bp overlap
ZNF770 3 datasets
ChIP HEK293 ENCFF468FCG 385 bp overlap
ChIP HEK293 ENCSR242BGR.ZNF770.HEK293 298 bp overlap
ChIP HEK293 GSE76494.ZNF770.HEK293 260 bp overlap
ZNF778 1 dataset
ChIP HEK293 GSE76494.ZNF778.HEK293 276 bp overlap
ZNF8 2 datasets
Motif DE_12h DE_12h-ZNF8_MA1718.1 20 bp overlap
ChIP SK-N-SH ENCFF131SMT 167 bp overlap
ZSCAN16 1 dataset
Motif DE_12h DE_12h-ZSCAN16_MA2100.1 18 bp overlap
ZSCAN31 1 dataset
Motif DE_12h DE_12h-ZSCAN31_MA1722.2 18 bp overlap
mix-a 1 dataset
Motif DE_12h DE_12h-mix-a_MA0621.2 7 bp overlap