Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. [provided by Alliance of Genome Resources, Jul 2025]
Transcription factors with Perturb-seq knockdown data for ZNF530. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = ZNF530 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of ZNF530, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr19:57,320,108–57,321,075 | 279.4 kb | Distal (>10kb) Multiome | 668 | |
| chr19:57,350,874–57,351,693 | 248.7 kb | Distal (>10kb) Multiome | 620 | |
| chr19:57,362,957–57,363,972 | 236.5 kb | Distal (>10kb) Multiome | 697 | |
| chr19:57,389,420–57,390,542 | 210.0 kb | Distal (>10kb) Multiome | 722 | |
| chr19:57,410,944–57,411,658 | 188.7 kb | Distal (>10kb) Multiome | 612 | |
| chr19:57,434,797–57,436,077 | 164.5 kb | Distal (>10kb) Multiome | 742 | |
| chr19:57,477,251–57,477,789 | 122.3 kb | Distal (>10kb) Multiome | 582 | |
| chr19:57,487,570–57,488,036 | 112.1 kb | Distal (>10kb) Multiome | 483 | |
| chr19:57,499,726–57,500,208 | 100.0 kb | Distal (>10kb) Multiome | 523 | |
| chr19:57,527,148–57,527,898 | 72.5 kb | Distal (>10kb) Multiome | 711 | |
| chr19:57,559,528–57,559,978 | 40.1 kb | Distal (>10kb) Multiome | 564 | |
| chr19:57,578,473–57,579,216 | 20.9 kb | Distal (>10kb) Multiome | 668 | |
| chr19:57,583,416–57,584,426 | 16.0 kb | Distal (>10kb) Multiome | 462 | |
| chr19:57,599,699–57,600,175 | 8 bp | At TSS Multiome | 646 | |
| chr19:57,614,049–57,614,534 | 14.3 kb | Distal (>10kb) Multiome | 661 | |
| chr19:57,632,786–57,633,679 | 33.3 kb | Distal (>10kb) Multiome | 652 | |
| chr19:57,681,556–57,682,393 | 82.0 kb | Distal (>10kb) Multiome | 724 | |
| chr19:57,708,682–57,709,450 | 109.3 kb | Distal (>10kb) Multiome | 199 | |
| chr19:57,727,326–57,727,941 | 127.8 kb | Distal (>10kb) Multiome | 400 | |
| chr19:57,746,610–57,747,111 | 146.9 kb | Distal (>10kb) Multiome | 625 | |
| chr19:57,769,422–57,770,058 | 169.8 kb | Distal (>10kb) Multiome | 509 | |
| chr19:57,803,547–57,804,316 | 204.0 kb | Distal (>10kb) Multiome | 206 | |
| chr19:57,804,773–57,805,214 | 205.2 kb | Distal (>10kb) Multiome | 37 | |
| chr19:57,814,439–57,815,270 | 215.1 kb | Distal (>10kb) Multiome | 692 | |
| chr19:57,819,268–57,819,991 | 219.8 kb | Distal (>10kb) Multiome | 734 | |
| chr19:57,829,187–57,830,712 | 230.4 kb | Distal (>10kb) Multiome | 321 | |
| chr19:57,849,421–57,850,221 | 249.9 kb | Distal (>10kb) Multiome | 291 | |
| chr19:57,888,389–57,889,457 | 289.2 kb | Distal (>10kb) Multiome | 322 |
Genomic view of the ZNF530 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.