chr2 : 101,003,317 – 101,003,471
154 bp 133 TFs 2 linked genes
This 154 bp open chromatin element is linked to RPL31 and ENSG00000223947 and is bound by 133 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
RPL31 1.0 kb Proximal Proximity
ENSG00000223947 1.1 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:100,998,317 – 101,008,471
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
133 transcription factors
Source
Cell type
AFF4 1 dataset
ChIP HepG2 ENCFF237BMI 115 bp overlap
AR 1 dataset
ChIP LTAD_EtOH GSE94577.AR.LTAD_EtOH 154 bp overlap
ARID1A 2 datasets
ChIP Hep-G2 GSE69566.ARID1A.Hep-G2 154 bp overlap
ChIP RMG-I GSE120058.ARID1A.RMG-I 108 bp overlap
ARID1B 1 dataset
ChIP Hep-G2 GSE69566.ARID1B.Hep-G2 99 bp overlap
ARID2 3 datasets
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.ARID2.BIN-67_lentivirus-SMARCA4-K785R 154 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.ARID2.BIN-67_lentivirus-SMARCA4-T910M 154 bp overlap
ChIP K-562 ENCSR491EBY.ARID2.K-562 154 bp overlap
ARID4A 1 dataset
ChIP Hep-G2 ENCSR386UBO.ARID4A.Hep-G2 154 bp overlap
ARID4B 3 datasets
ChIP HepG2 ENCFF519OXJ 154 bp overlap
ChIP HepG2 ENCFF519OXJ 154 bp overlap
ChIP PC-3 GSE116669.ARID4B.PC-3 136 bp overlap
ARNT 1 dataset
ChIP K-562 ENCSR613NUC.ARNT.K-562 154 bp overlap
ATF1 1 dataset
ChIP K-562 ENCSR091GVJ.ATF1.K-562 154 bp overlap
BCOR 1 dataset
ChIP K-562 ENCSR808AKZ.BCOR.K-562 154 bp overlap
BORCS8,MEF2B 1 dataset
ChIP HepG2 ENCFF255VGS 154 bp overlap
BRD1 2 datasets
ChIP HUES-64 GSE104059.BRD1.HUES-64 154 bp overlap
ChIP RKO GSE47190.BRD1.RKO 154 bp overlap
BRD4 6 datasets
ChIP SUM159PT_DMSO_48h GSE87418.BRD4.SUM159PT_DMSO_48h 141 bp overlap
ChIP SUM159PT_Dox_48h GSE87418.BRD4.SUM159PT_Dox_48h 62 bp overlap
ChIP SUM159PT_KO GSE131097.BRD4.SUM159PT_KO 154 bp overlap
ChIP THP-1_iBET-BD1 GSE138084.BRD4.THP-1_iBET-BD1 154 bp overlap
ChIP THP-1_iBET-BD1-PMA GSE138084.BRD4.THP-1_iBET-BD1-PMA 154 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 154 bp overlap
CDKN1B 1 dataset
ChIP MDA-MB-231_p27CK-DD GSE112444.CDKN1B.MDA-MB-231_p27CK-DD 154 bp overlap
CHD1 4 datasets
ChIP H1 ENCFF998XEK 154 bp overlap
ChIP K-562 ENCSR000AQD.CHD1.K-562 154 bp overlap
ChIP LNCaP GSE64528.CHD1.LNCaP 54 bp overlap
ChIP WA01 ENCSR000EBU.CHD1.WA01 67 bp overlap
CTCF 2 datasets
ChIP HepG2 ENCFF757EKU 154 bp overlap
ChIP testis ENCSR753RME.CTCF.testis 124 bp overlap
CTCFL 1 dataset
ChIP FT282 GSE131931.CTCFL.FT282 110 bp overlap
DMTF1 1 dataset
ChIP K562 ENCFF947QUY 154 bp overlap
DNMT3B 1 dataset
ChIP HepG2 ENCFF341GEA 154 bp overlap
E2F1 1 dataset
ChIP MCF-7 ENCSR000EWX.E2F1.MCF-7 154 bp overlap
E2F4 1 dataset
ChIP HepG2 ENCFF311TOD 154 bp overlap
EGR1 1 dataset
ChIP Hep-G2 ENCSR026GSW.EGR1.Hep-G2 154 bp overlap
ELF1 3 datasets
ChIP Hep-G2 ENCSR321VGW.ELF1.Hep-G2 59 bp overlap
ChIP HepG2 ENCFF367ZWV 154 bp overlap
ChIP HepG2 ENCFF367ZWV 55 bp overlap
EZH2 1 dataset
ChIP neural progenitor cell ENCFF018MKA 149 bp overlap
FBXL19 1 dataset
ChIP HepG2 ENCFF127ONN 154 bp overlap
FOXA1 1 dataset
ChIP breast-cancer_Veh-2856 GSE128018.FOXA1.breast-cancer_Veh-2856 56 bp overlap
FOXK1 1 dataset
ChIP HepG2 ENCFF635XWY 154 bp overlap
GATA2 1 dataset
ChIP dermal-fibroblast_alone GSE51025.GATA2.dermal-fibroblast_alone 130 bp overlap
GATAD1 1 dataset
ChIP HepG2 ENCFF044OVE 154 bp overlap
GLYR1 1 dataset
ChIP HepG2 ENCFF114PDZ 154 bp overlap
HDAC1 9 datasets
ChIP HepG2 ENCFF304IEJ 154 bp overlap
ChIP HepG2 ENCFF750ZWM 154 bp overlap
ChIP HepG2 ENCFF750ZWM 154 bp overlap
ChIP HepG2 ENCFF750ZWM 154 bp overlap
ChIP K-562 ENCSR711VWL.HDAC1.K-562 154 bp overlap
ChIP MCF-7_ARID1A-KO_4-OHT_clone14 GSE123284.HDAC1.MCF-7_ARID1A-KO_4-OHT_clone14 69 bp overlap
ChIP MCF-7_ARID1A-KO_clone14 GSE123284.HDAC1.MCF-7_ARID1A-KO_clone14 154 bp overlap
ChIP MCF-7_parental GSE123284.HDAC1.MCF-7_parental 153 bp overlap
ChIP NB4 GSE126720.HDAC1.NB4 154 bp overlap
HDAC2 1 dataset
ChIP K-562 ENCSR893WSB.HDAC2.K-562 154 bp overlap
HDGF 2 datasets
ChIP K-562 ENCSR563YDA.HDGF.K-562 154 bp overlap
ChIP K-562 ENCSR197ALX.HDGF.K-562 154 bp overlap
HIVEP1 1 dataset
ChIP Hep-G2 ENCSR697WMX.HIVEP1.Hep-G2 133 bp overlap
HMGB2 1 dataset
ChIP HUVEC-C GSE98245.HMGB2.HUVEC-C 154 bp overlap
HMGXB4 2 datasets
ChIP Hep-G2 ENCSR174GOO.HMGXB4.Hep-G2 154 bp overlap
ChIP Hep-G2 ENCSR599XKG.HMGXB4.Hep-G2 154 bp overlap
HNRNPK 1 dataset
ChIP primary-keratinocyte GSE122327.HNRNPK.primary-keratinocyte 154 bp overlap
HOXA10 1 dataset
ChIP HepG2 ENCFF422LBU 154 bp overlap
HOXA7 1 dataset
ChIP A549 ENCFF746ZBJ 126 bp overlap
HOXA9 1 dataset
ChIP HepG2 ENCFF214TLU 62 bp overlap
ID3 1 dataset
ChIP K-562 ENCSR005NMT.ID3.K-562 154 bp overlap
INO80 1 dataset
ChIP Hep-G2 GSE107730.INO80.Hep-G2 154 bp overlap
JUN 1 dataset
ChIP MDA-BoM-1833 GSE112444.JUN.MDA-BoM-1833 154 bp overlap
KAT7 1 dataset
ChIP K562 ENCFF175ZTN 154 bp overlap
KDM1A 1 dataset
ChIP pancreatic-progenitor_GT GSE104840.KDM1A.pancreatic-progenitor_GT 154 bp overlap
KDM2A 1 dataset
ChIP HepG2 ENCFF491GTR 146 bp overlap
KDM5A 4 datasets
ChIP H1 ENCFF987NIN 154 bp overlap
ChIP HepG2 ENCFF105YGO 66 bp overlap
ChIP HepG2 ENCFF105YGO 154 bp overlap
ChIP HepG2 ENCFF105YGO 154 bp overlap
KMT2A 4 datasets
ChIP Hep-G2 ENCSR692GFR.KMT2A.Hep-G2 154 bp overlap
ChIP MOLM-13 GSE114981.KMT2A.MOLM-13 154 bp overlap
ChIP MOLM-13_CBS79-KO-VP-HOTTIP GSE114981.KMT2A.MOLM-13_CBS79-KO-VP-HOTTIP 154 bp overlap
ChIP OCI-AML-3_DMSO GSE129636.KMT2A.OCI-AML-3_DMSO 154 bp overlap
LCOR 1 dataset
ChIP HepG2 ENCFF499KCU 154 bp overlap
LIN54 1 dataset
ChIP Hep-G2 ENCSR597MCV.LIN54.Hep-G2 154 bp overlap
MAX 1 dataset
ChIP Hep-G2 ENCSR168DYA.MAX.Hep-G2 124 bp overlap
MED1 4 datasets
ChIP HCT-116_shLuc_thaps GSE121798.MED1.HCT-116_shLuc_thaps 154 bp overlap
ChIP HCT-116_thaps GSE121798.MED1.HCT-116_thaps 154 bp overlap
ChIP HUVEC-C_siCTL GSE124892.MED1.HUVEC-C_siCTL 154 bp overlap
ChIP HUVEC-C_siERG GSE124892.MED1.HUVEC-C_siERG 73 bp overlap
MIER1 1 dataset
ChIP K-562 ENCSR426MDV.MIER1.K-562 154 bp overlap
MLLT1 2 datasets
ChIP K-562 ENCSR675LRO.MLLT1.K-562 154 bp overlap
ChIP MV4-11 GSE82116.MLLT1.MV4-11 144 bp overlap
MORC2 1 dataset
ChIP H9 GSE95374.MORC2.H9 154 bp overlap
MTERF4 1 dataset
ChIP HepG2 ENCFF831NAM 133 bp overlap
MXI1 1 dataset
ChIP SK-N-SH ENCFF746HVJ 118 bp overlap
MYC 1 dataset
ChIP BE2C_SHCTR GSE70098.MYC.BE2C_SHCTR 154 bp overlap
MYCN 2 datasets
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 154 bp overlap
ChIP SH-EP_pRRL-MYCN GSE111905.MYCN.SH-EP_pRRL-MYCN 62 bp overlap
NCAPH2 2 datasets
ChIP IMR-90_Bethyl275_OIS GSE118494.NCAPH2.IMR-90_Bethyl275_OIS 152 bp overlap
ChIP IMR-90_FLAG_OIS GSE118494.NCAPH2.IMR-90_FLAG_OIS 154 bp overlap
NEUROD1 1 dataset
ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 154 bp overlap
NFIC 1 dataset
ChIP HepG2 ENCFF169TKU 154 bp overlap
NIPBL 1 dataset
ChIP HCT-116_RAD21-mAC GSE104888.NIPBL.HCT-116_RAD21-mAC 79 bp overlap
NR2F1 1 dataset
ChIP neuron-progenitor GSE132965.NR2F1.neuron-progenitor 148 bp overlap
NR2F2 2 datasets
ChIP HepG2 ENCFF483TVJ 154 bp overlap
ChIP HepG2 ENCFF483TVJ 83 bp overlap
NUFIP1 1 dataset
ChIP K562 ENCFF119BQA 154 bp overlap
PAF1 1 dataset
ChIP HepG2 ENCFF949UAN 154 bp overlap
PAXIP1 2 datasets
ChIP Hep-G2 ENCSR530ARJ.PAXIP1.Hep-G2 127 bp overlap
ChIP HepG2 ENCFF526NOJ 154 bp overlap
PHIP 2 datasets
ChIP HCT-116_ab834 GSE101646.PHIP.HCT-116_ab834 154 bp overlap
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 154 bp overlap
POGZ 1 dataset
ChIP HepG2 ENCFF153UUK 154 bp overlap
POLR2A 7 datasets
ChIP A549 ENCFF034EBG 154 bp overlap
ChIP HepG2 ENCFF718XAJ 154 bp overlap
ChIP HepG2 ENCFF718XAJ 52 bp overlap
ChIP K562 ENCFF836GHX 154 bp overlap
ChIP K562 ENCFF836GHX 150 bp overlap
ChIP Panc1 ENCFF290KAB 154 bp overlap
ChIP spleen ENCFF706IUS 154 bp overlap
POLR2G 2 datasets
ChIP HepG2 ENCFF241AEG 154 bp overlap
ChIP HepG2 ENCFF508UTS 154 bp overlap
RAD21 1 dataset
ChIP MDM GSE103477.RAD21.MDM 73 bp overlap
REST 1 dataset
ChIP A-549 ENCSR892DRK.REST.A-549 154 bp overlap
RFX3 1 dataset
ChIP HepG2 ENCFF681ZHO 154 bp overlap
RUVBL2 2 datasets
ChIP Hep-G2 GSE97411.RUVBL2.Hep-G2 154 bp overlap
ChIP Hep-G2 GSE107730.RUVBL2.Hep-G2 154 bp overlap
SFPQ 1 dataset
ChIP LTAD_EtOH GSE94577.SFPQ.LTAD_EtOH 72 bp overlap
SIN3A 1 dataset
ChIP HUVEC-C GSE103245.SIN3A.HUVEC-C 154 bp overlap
SIN3B 1 dataset
ChIP K562 ENCFF168IBR 154 bp overlap
SMAD2-3 1 dataset
ChIP HUVEC-C_TGFB1 GSE134556.SMAD2-3.HUVEC-C_TGFB1 105 bp overlap
SMAD3 2 datasets
ChIP Hep-G2 ENCSR005GZH.SMAD3.Hep-G2 71 bp overlap
ChIP SUM159PT GSE130364.SMAD3.SUM159PT 62 bp overlap
SMARCA4 10 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4 154 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-K785R 154 bp overlap
ChIP K-562 ENCSR587OQL.SMARCA4.K-562 154 bp overlap
ChIP K-562 ENCSR643VTW.SMARCA4.K-562 154 bp overlap
ChIP MCF-7_ARID1A-KO_4-OHT_clone14 GSE123284.SMARCA4.MCF-7_ARID1A-KO_4-OHT_clone14 119 bp overlap
ChIP NGP_ARID1A-mut2 GSE134626.SMARCA4.NGP_ARID1A-mut2 146 bp overlap
ChIP TTC-1240 GSE124903.SMARCA4.TTC-1240 154 bp overlap
ChIP TTC-1240_R377H GSE124903.SMARCA4.TTC-1240_R377H 154 bp overlap
ChIP TTC-1240_SMARCB1-FL GSE124903.SMARCA4.TTC-1240_SMARCB1-FL 154 bp overlap
ChIP TTC-1240_delC GSE124903.SMARCA4.TTC-1240_delC 154 bp overlap
SMARCB1 1 dataset
ChIP MCF-7_estrogen GSE123284.SMARCB1.MCF-7_estrogen 154 bp overlap
SMARCC2 1 dataset
ChIP K-562 ENCSR519WMW.SMARCC2.K-562 154 bp overlap
SMARCD3 1 dataset
ChIP MCF-7_KO GSE124225.SMARCD3.MCF-7_KO 57 bp overlap
SMARCE1 1 dataset
ChIP K-562 ENCSR157TCS.SMARCE1.K-562 154 bp overlap
SMC3 1 dataset
ChIP neural ENCSR404BPV.SMC3.neural 154 bp overlap
SOX13 1 dataset
ChIP HepG2 ENCFF062VSQ 154 bp overlap
SP3 1 dataset
ChIP HEK293 ENCSR141PZA.SP3.HEK293 64 bp overlap
SSRP1 1 dataset
ChIP hiF-T GSE98758.SSRP1.hiF-T 154 bp overlap
STAG1 1 dataset
ChIP HepG2 ENCFF843EBZ 154 bp overlap
SUPT16H 1 dataset
ChIP hiF-T GSE98758.SUPT16H.hiF-T 132 bp overlap
TAF1 1 dataset
ChIP PFSK-1 ENCFF982LZL 154 bp overlap
TBP 2 datasets
ChIP hESC_10h GSE122298.TBP.hESC_10h 154 bp overlap
ChIP hESC_2h GSE122298.TBP.hESC_2h 72 bp overlap
TEAD1 3 datasets
ChIP CCLP1 GSE62272.TEAD1.CCLP1 107 bp overlap
ChIP MSTO GSE68170.TEAD1.MSTO 154 bp overlap
ChIP keratinocyte GSE138727.TEAD1.keratinocyte 154 bp overlap
TEAD3 1 dataset
ChIP HepG2 ENCFF054UUL 154 bp overlap
TEAD4 17 datasets
ChIP BJ_fibroblast GSE114367.TEAD4.BJ_fibroblast 152 bp overlap
ChIP BJ_fibroblast_CD13-neg GSE114367.TEAD4.BJ_fibroblast_CD13-neg 154 bp overlap
ChIP BJ_fibroblast_CD13-pos GSE114367.TEAD4.BJ_fibroblast_CD13-pos 154 bp overlap
ChIP H1 ENCFF778PAX 154 bp overlap
ChIP HepG2 ENCFF006QNB 154 bp overlap
ChIP HepG2 ENCFF006QNB 74 bp overlap
ChIP HepG2 ENCFF250NXO 118 bp overlap
ChIP MCF-7_BLRP_WT_E2 GSE125594.TEAD4.MCF-7_BLRP_WT_E2 154 bp overlap
ChIP MCF-7_BLRP_WT_Veh GSE125594.TEAD4.MCF-7_BLRP_WT_Veh 148 bp overlap
ChIP MCF-7_E2 GSE125594.TEAD4.MCF-7_E2 154 bp overlap
ChIP MCF-7_ICI GSE125594.TEAD4.MCF-7_ICI 154 bp overlap
ChIP MCF-7_Veh GSE125594.TEAD4.MCF-7_Veh 154 bp overlap
ChIP PC-9_1DF GSE131687.TEAD4.PC-9_1DF 154 bp overlap
ChIP SK-MEL-147 GSE94488.TEAD4.SK-MEL-147 154 bp overlap
ChIP T-47D_E2 GSE125594.TEAD4.T-47D_E2 154 bp overlap
ChIP T-47D_Veh GSE125594.TEAD4.T-47D_Veh 154 bp overlap
ChIP hMSC-TERT4 GSE140782.TEAD4.hMSC-TERT4 154 bp overlap
TFDP2 1 dataset
ChIP Hep-G2 ENCSR069JKP.TFDP2.Hep-G2 87 bp overlap
TOPORS 1 dataset
ChIP HepG2 ENCFF581ABM 154 bp overlap
U2AF1 1 dataset
ChIP Hep-G2 GSE120104.U2AF1.Hep-G2 139 bp overlap
U2AF1L5,U2AF1 2 datasets
ChIP HepG2 ENCFF758IXU 143 bp overlap
ChIP HepG2 ENCFF758IXU 154 bp overlap
USF1 1 dataset
ChIP WTC11 ENCFF699QGS 123 bp overlap
XRCC5 3 datasets
ChIP HepG2 ENCFF330PDO 154 bp overlap
ChIP HepG2 ENCFF680LVJ 154 bp overlap
ChIP HepG2 ENCFF680LVJ 85 bp overlap
YY1AP1 1 dataset
ChIP PC-9_1DF GSE131687.YY1AP1.PC-9_1DF 154 bp overlap
ZBTB21 1 dataset
ChIP HepG2 ENCFF276JLT 154 bp overlap
ZBTB26 1 dataset
ChIP HepG2 ENCFF492SAJ 154 bp overlap
ZBTB40 1 dataset
ChIP K562 ENCFF521DSV 92 bp overlap
ZFP3 2 datasets
ChIP SK-N-SH ENCFF981MBE 154 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR581GUY.ZFP3.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 154 bp overlap
ZFP82 1 dataset
ChIP HepG2 ENCFF665HBX 154 bp overlap
ZGPAT 1 dataset
ChIP Hep-G2 ENCSR704IGU.ZGPAT.Hep-G2 154 bp overlap
ZKSCAN5 1 dataset
ChIP HepG2 ENCFF579HCQ 116 bp overlap
ZMYM3 1 dataset
ChIP HepG2 ENCFF408KTI 154 bp overlap
ZMYND11 1 dataset
ChIP HeLa GSE51672.ZMYND11.HeLa 136 bp overlap
ZNF2 1 dataset
ChIP HEK293 ENCSR011CKE.ZNF2.HEK293 154 bp overlap
ZNF219 1 dataset
ChIP HepG2 ENCFF266JIR 97 bp overlap
ZNF232 1 dataset
ChIP WTC11 ENCFF901BGD 154 bp overlap
ZNF280D 1 dataset
ChIP HepG2 ENCFF203BIA 154 bp overlap
ZNF33B 1 dataset
ChIP HepG2 ENCFF921KSE 154 bp overlap
ZNF343 1 dataset
ChIP HepG2 ENCFF003KCM 154 bp overlap
ZNF395 1 dataset
ChIP K562 ENCFF464EIT 116 bp overlap
ZNF407 1 dataset
ChIP Hep-G2 ENCSR005WGY.ZNF407.Hep-G2 109 bp overlap
ZNF441 1 dataset
ChIP HepG2 ENCFF738UDK 154 bp overlap
ZNF460 2 datasets
ChIP HepG2 ENCFF007NNM 129 bp overlap
ChIP HepG2 ENCFF007NNM 96 bp overlap
ZNF48 1 dataset
ChIP HepG2 ENCFF362CDQ 154 bp overlap
ZNF570 1 dataset
ChIP HepG2 ENCFF726HHS 133 bp overlap
ZNF598 1 dataset
ChIP Hep-G2 ENCSR173NAL.ZNF598.Hep-G2 154 bp overlap
ZNF608 1 dataset
ChIP HepG2 ENCFF713QUJ 52 bp overlap
ZNF615 1 dataset
ChIP HepG2 ENCFF440YLL 154 bp overlap
ZNF678 1 dataset
ChIP HepG2 ENCFF492GSH 154 bp overlap
ZNF781 1 dataset
ChIP HepG2 ENCFF209OTE 154 bp overlap
ZNF816 1 dataset
ChIP HepG2 ENCFF294VPD 154 bp overlap
ZNF883 1 dataset
ChIP Hep-G2 ENCSR882YYL.ZNF883.Hep-G2 140 bp overlap
ZSCAN25 1 dataset
ChIP HepG2 ENCFF265FLD 154 bp overlap
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