Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. [provided by Alliance of Genome Resources, Jul 2025]
Transcription factors with Perturb-seq knockdown data for ZFP3. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = ZFP3 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of ZFP3, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr17:4,789,618–4,790,520 | 288.2 kb | Distal (>10kb) Multiome | 816 | |
| chr17:4,795,974–4,796,433 | 282.4 kb | Distal (>10kb) Multiome | 751 | |
| chr17:4,806,693–4,807,619 | 271.4 kb | Distal (>10kb) Multiome | 494 | |
| chr17:4,832,863–4,833,956 | 245.1 kb | Distal (>10kb) Multiome | 730 | |
| chr17:4,898,962–4,900,112 | 179.0 kb | Distal (>10kb) Multiome | 257 | |
| chr17:4,900,249–4,901,057 | 177.7 kb | Distal (>10kb) Multiome | 145 | |
| chr17:4,909,117–4,909,538 | 169.2 kb | Distal (>10kb) Multiome | 553 | |
| chr17:4,939,475–4,941,034 | 138.3 kb | Distal (>10kb) Multiome | 821 | |
| chr17:4,947,426–4,950,636 | 128.2 kb | Distal (>10kb) Multiome | 1080 | |
| chr17:4,966,739–4,968,875 | 110.9 kb | Distal (>10kb) Multiome | 982 | |
| chr17:4,986,950–4,987,983 | 90.9 kb | Distal (>10kb) Multiome | 881 | |
| chr17:4,996,838–4,998,964 | 80.8 kb | Distal (>10kb) Multiome | 759 | |
| chr17:5,078,114–5,078,572 | at TSS | At TSS | 361 | |
| chr17:5,111,339–5,112,612 | 33.5 kb | Distal (>10kb) Multiome | 864 | |
| chr17:5,191,578–5,192,305 | 113.4 kb | Distal (>10kb) Multiome | 771 | |
| chr17:5,281,614–5,283,116 | 203.8 kb | Distal (>10kb) Multiome | 705 |
Genomic view of the ZFP3 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.