chr1 : 246,788,840 246,789,414
574 bp 150 TFs 2 linked genes
This 574 bp open chromatin element is linked to LINC01341 and ENSG00000293403 and is bound by 150 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
LINC01341 at TSS At TSS Proximity
ENSG00000293403 246 bp At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:246,783,840 – 246,794,414
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
150 transcription factors
Source
Cell type
AGO1 6 datasets
ChIP Hep-G2 GSE120104.AGO1.Hep-G2 574 bp overlap
ChIP Hep-G2 ENCSR555ZMV.AGO1.Hep-G2 574 bp overlap
ChIP HepG2 ENCFF277EOU 539 bp overlap
ChIP HepG2 ENCFF358CXO 539 bp overlap
ChIP K-562 ENCSR641BSL.AGO1.K-562 434 bp overlap
ChIP K-562 GSE120104.AGO1.K-562 347 bp overlap
AGO2 2 datasets
ChIP HepG2 ENCFF252VFI 432 bp overlap
ChIP HepG2 ENCFF773YDL 432 bp overlap
AR 2 datasets
ChIP prostate_cancer-associated-fibroblasts GSE90772.AR.prostate_cancer-associated-fibroblasts 229 bp overlap
ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 394 bp overlap
ASH2L 2 datasets
ChIP Hep-G2 ENCSR508LMH.ASH2L.Hep-G2 553 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 574 bp overlap
BCL11B 2 datasets
ChIP thymus_CD34neg GSE84677.BCL11B.thymus_CD34neg 148 bp overlap
ChIP thymus_CD34neg GSE84677.BCL11B.thymus_CD34neg 155 bp overlap
BCOR 2 datasets
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 499 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 558 bp overlap
BRD2 1 dataset
ChIP foreskin_NHM1-5 GSE94488.BRD2.foreskin_NHM1-5 468 bp overlap
BRD4 8 datasets
ChIP IMR-90_QUIES GSE74238.BRD4.IMR-90_QUIES 226 bp overlap
ChIP MCF-10A ERP003925.BRD4.MCF-10A 425 bp overlap
ChIP MDA-MB-157 ERP003925.BRD4.MDA-MB-157 500 bp overlap
ChIP hESC GSE33281.BRD4.hESC 106 bp overlap
ChIP retina_AB1-FW13 GSE86981.BRD4.retina_AB1-FW13 275 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 504 bp overlap
ChIP retina_AB1-FW20 GSE86981.BRD4.retina_AB1-FW20 303 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 574 bp overlap
CBFB 2 datasets
ChIP Hep-G2 ENCSR479RZV.CBFB.Hep-G2 196 bp overlap
ChIP ME-1 GSE46044.CBFB.ME-1 354 bp overlap
CDK9 1 dataset
ChIP HCT-116 GSE72622.CDK9.HCT-116 172 bp overlap
CHD1 1 dataset
ChIP hMSC-TERT GSE89179.CHD1.hMSC-TERT 340 bp overlap
CTCF 4 datasets
ChIP GM12866 ENCSR000DRF.CTCF.GM12866 128 bp overlap
ChIP T-47D_Y537S GSE148277.CTCF.T-47D_Y537S 235 bp overlap
ChIP hiPSC_failed-genome-editing GSE106870.CTCF.hiPSC_failed-genome-editing 149 bp overlap
ChIP hiPSC_parental-line GSE106870.CTCF.hiPSC_parental-line 158 bp overlap
CTCFL 1 dataset
ChIP K-562 GSE70764.CTCFL.K-562 323 bp overlap
E2F6 1 dataset
ChIP WA01 ENCSR000BSI.E2F6.WA01 290 bp overlap
EGR1 1 dataset
ChIP Hep-G2 ENCSR026GSW.EGR1.Hep-G2 265 bp overlap
ELF1 2 datasets
ChIP GM12878 ENCSR000BMB.ELF1.GM12878 326 bp overlap
ChIP Hep-G2 ENCSR321VGW.ELF1.Hep-G2 238 bp overlap
ERG 2 datasets
ChIP CD34_NR29 GSE23730.ERG.CD34_NR29 263 bp overlap
ChIP K-562_DOX GSE23730.ERG.K-562_DOX 234 bp overlap
ESR1 2 datasets
ChIP Ishikawa GSE99905.ESR1.Ishikawa 446 bp overlap
ChIP MCF-7 GSE48930.ESR1.MCF-7 177 bp overlap
ETS1 1 dataset
ChIP HUVEC-C_VEGF_12H GSE41166.ETS1.HUVEC-C_VEGF_12H 278 bp overlap
EZH2 1 dataset
ChIP WA01 ENCSR000ASY.EZH2.WA01 289 bp overlap
FLI1 1 dataset
ChIP TSU-1621MT GSE60477.FLI1.TSU-1621MT 277 bp overlap
FOXA2 1 dataset
ChIP PANC-1_EV GSE119930.FOXA2.PANC-1_EV 62 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 124 bp overlap
GABPA 1 dataset
ChIP WA01 ENCSR000BIW.GABPA.WA01 404 bp overlap
GABPB1 1 dataset
ChIP HepG2 ENCFF315AWN 478 bp overlap
HEXIM1 1 dataset
ChIP HCT-116 GSE72622.HEXIM1.HCT-116 246 bp overlap
HIF1A 1 dataset
ChIP BEAS-2B_arsenic GSE145834.HIF1A.BEAS-2B_arsenic 244 bp overlap
HMGN3 1 dataset
ChIP K-562 ENCSR000DOB.HMGN3.K-562 270 bp overlap
HNRNPC 1 dataset
ChIP Hep-G2 GSE120104.HNRNPC.Hep-G2 263 bp overlap
HNRNPK 4 datasets
ChIP Hep-G2 GSE120104.HNRNPK.Hep-G2 360 bp overlap
ChIP Hep-G2 ENCSR519QAA.HNRNPK.Hep-G2 286 bp overlap
ChIP K-562 GSE120104.HNRNPK.K-562 212 bp overlap
ChIP K-562 ENCSR014RCS.HNRNPK.K-562 204 bp overlap
HNRNPLL 2 datasets
ChIP Hep-G2 GSE120104.HNRNPLL.Hep-G2 333 bp overlap
ChIP Hep-G2 ENCSR804HMZ.HNRNPLL.Hep-G2 340 bp overlap
HOXA3 1 dataset
ChIP Hep-G2 ENCSR999JKC.HOXA3.Hep-G2 121 bp overlap
IFNA1 1 dataset
ChIP Huh-7_GFP GSE110511.IFNA1.Huh-7_GFP 426 bp overlap
IRF4 1 dataset
ChIP BC-3 GSE132777.IRF4.BC-3 222 bp overlap
JARID2 3 datasets
ChIP AMIPS6 GSE48516.JARID2.AMIPS6 223 bp overlap
ChIP MRC-5_IPS25_CTR GSE48515.JARID2.MRC-5_IPS25_CTR 244 bp overlap
ChIP MRC-5_IPS25_MEG3 GSE48515.JARID2.MRC-5_IPS25_MEG3 369 bp overlap
JMJD1C 1 dataset
ChIP NB4 GSE63484.JMJD1C.NB4 165 bp overlap
JUN 1 dataset
ChIP ESC S24-ESC-d0-JUN-exp1 281 bp overlap
KDM1A 1 dataset
ChIP NB4_DMSO GSE128528.KDM1A.NB4_DMSO 512 bp overlap
KDM2A 1 dataset
ChIP HepG2 ENCFF491GTR 478 bp overlap
KDM3A 1 dataset
ChIP Hep-G2 ENCSR387JKT.KDM3A.Hep-G2 273 bp overlap
KDM5B 2 datasets
ChIP Hep-G2 ENCSR227MRE.KDM5B.Hep-G2 482 bp overlap
ChIP SUM185_SHCTCF GSE46055.KDM5B.SUM185_SHCTCF 114 bp overlap
KDM6B 1 dataset
ChIP CUTLL1 GSE56694.KDM6B.CUTLL1 202 bp overlap
KLF1 1 dataset
Motif ES_0h ES_0h-KLF1_MA0493.3 8 bp overlap
KLF10 1 dataset
Motif ES_0h ES_0h-KLF10_MA1511.2 9 bp overlap
KLF12 1 dataset
Motif ES_0h ES_0h-KLF12_MA0742.2 9 bp overlap
KLF14 1 dataset
Motif ES_0h ES_0h-KLF14_MA0740.2 9 bp overlap
KLF15 1 dataset
Motif ES_0h ES_0h-KLF15_MA1513.2 8 bp overlap
KLF2 1 dataset
Motif ES_0h ES_0h-KLF2_MA1515.2 8 bp overlap
KLF4 1 dataset
Motif ES_0h ES_0h-KLF4_MA0039.5 8 bp overlap
KLF5 1 dataset
Motif ES_0h ES_0h-KLF5_MA0599.1 10 bp overlap
KLF6 2 datasets
ChIP Hep-G2 ENCSR757EKM.KLF6.Hep-G2 90 bp overlap
ChIP Hep-G2 ENCSR757EKM.KLF6.Hep-G2 200 bp overlap
KLF7 1 dataset
Motif ES_0h ES_0h-KLF7_MA1959.2 8 bp overlap
KLF9 1 dataset
ChIP GBM1A GSE62211.KLF9.GBM1A 86 bp overlap
KMT2A 3 datasets
ChIP CCRF-CEM GSE83671.KMT2A.CCRF-CEM 327 bp overlap
ChIP Hep-G2 ENCSR692GFR.KMT2A.Hep-G2 172 bp overlap
ChIP RCH-ACV GSE83671.KMT2A.RCH-ACV 574 bp overlap
MAX 3 datasets
ChIP Hep-G2 ENCSR168DYA.MAX.Hep-G2 446 bp overlap
ChIP Hep-G2 ENCSR000BTM.MAX.Hep-G2 183 bp overlap
ChIP HepG2 ENCFF507HCX 507 bp overlap
MAZ 1 dataset
Motif DE_12h DE_12h-MAZ_MA1522.2 8 bp overlap
MED1 2 datasets
ChIP HCT-116 GSE121798.MED1.HCT-116 360 bp overlap
ChIP HCT-116_thaps GSE121798.MED1.HCT-116_thaps 309 bp overlap
MNX1 1 dataset
ChIP Hep-G2 ENCSR108MKR.MNX1.Hep-G2 368 bp overlap
MTA1 1 dataset
ChIP Hep-G2 ENCSR983KRB.MTA1.Hep-G2 360 bp overlap
MYBL2 1 dataset
ChIP Hep-G2 ENCSR581KCO.MYBL2.Hep-G2 178 bp overlap
MYC 1 dataset
ChIP CD34 GSE85488.MYC.CD34 364 bp overlap
MYCN 1 dataset
ChIP SHEP-21N_DOX_24H GSE80151.MYCN.SHEP-21N_DOX_24H 190 bp overlap
MYNN 1 dataset
ChIP Hep-G2 ENCSR398TMP.MYNN.Hep-G2 192 bp overlap
NANOG 4 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 269 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 154 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 385 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 437 bp overlap
NFKB1 1 dataset
ChIP HEK293T_2KR GSE129618.NFKB1.HEK293T_2KR 220 bp overlap
NOTCH1 1 dataset
ChIP HPBALL GSE39263.NOTCH1.HPBALL 531 bp overlap
NR2F2 2 datasets
ChIP MCF-7_E2 GSE132432.NR2F2.MCF-7_E2 407 bp overlap
ChIP MCF-7_Veh GSE132432.NR2F2.MCF-7_Veh 384 bp overlap
OGG1 3 datasets
ChIP HEK293 GSE89017.OGG1.HEK293 384 bp overlap
ChIP HEK293_15min GSE89017.OGG1.HEK293_15min 403 bp overlap
ChIP HEK293_30_min GSE89017.OGG1.HEK293_30_min 374 bp overlap
ONECUT1 3 datasets
ChIP Hep-G2 ENCSR956OSX.ONECUT1.Hep-G2 69 bp overlap
ChIP HepG2 ENCFF243FIR 145 bp overlap
ChIP liver ERP002306.ONECUT1.liver 109 bp overlap
PATZ1 2 datasets
Motif DE_12h DE_12h-PATZ1_MA1961.2 11 bp overlap
Motif ES_0h ES_0h-PATZ1_MA1961.2 11 bp overlap
PCBP1 4 datasets
ChIP Hep-G2 GSE120104.PCBP1.Hep-G2 393 bp overlap
ChIP Hep-G2 ENCSR872EVQ.PCBP1.Hep-G2 391 bp overlap
ChIP K-562 GSE120104.PCBP1.K-562 354 bp overlap
ChIP K-562 ENCSR052PTN.PCBP1.K-562 355 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 486 bp overlap
PHF8 1 dataset
ChIP Hep-G2 ENCSR604VAE.PHF8.Hep-G2 553 bp overlap
POLR2A 1 dataset
ChIP sigmoid colon ENCFF748YVT 445 bp overlap
POLR2G 1 dataset
ChIP K562 ENCFF648YPL 355 bp overlap
POU2F1 1 dataset
ChIP T-47D_D538G GSE148277.POU2F1.T-47D_D538G 234 bp overlap
POU5F1 6 datasets
ChIP BG03 GSE21614.POU5F1.BG03 162 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 502 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 213 bp overlap
ChIP SKM-1 GSE93706.POU5F1.SKM-1 322 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 425 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 491 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 437 bp overlap
PRDM14 1 dataset
ChIP NCCIT GSE71675.PRDM14.NCCIT 413 bp overlap
PTBP1 1 dataset
ChIP Hep-G2 ENCSR156APP.PTBP1.Hep-G2 274 bp overlap
RAD21 1 dataset
ChIP hiPSC_parental-line GSE106870.RAD21.hiPSC_parental-line 127 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 309 bp overlap
RBM22 2 datasets
ChIP K-562 GSE120104.RBM22.K-562 251 bp overlap
ChIP K-562 ENCSR848AOP.RBM22.K-562 180 bp overlap
RBM39 2 datasets
ChIP Hep-G2 GSE120104.RBM39.Hep-G2 219 bp overlap
ChIP Hep-G2 ENCSR339JTP.RBM39.Hep-G2 227 bp overlap
RORC 2 datasets
ChIP HCC70 GSE126380.RORC.HCC70 567 bp overlap
ChIP HCC70_XY018 GSE126380.RORC.HCC70_XY018 505 bp overlap
RUNX1 4 datasets
ChIP AML GSE111821.RUNX1.AML 266 bp overlap
ChIP Jurkat GSE85524.RUNX1.Jurkat 308 bp overlap
ChIP NB4 GSE81992.RUNX1.NB4 426 bp overlap
ChIP epididymis_HEE GSE109061.RUNX1.epididymis_HEE 191 bp overlap
RUVBL2 1 dataset
ChIP Huh-7 GSE97411.RUVBL2.Huh-7 272 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 469 bp overlap
SIN3A 1 dataset
ChIP hiPSC_IB12 GSE106870.SIN3A.hiPSC_IB12 137 bp overlap
SMAD1 1 dataset
ChIP Hep-G2 ENCSR213QOZ.SMAD1.Hep-G2 240 bp overlap
SMARCA4 2 datasets
ChIP hiPSC GSE124903.SMARCA4.hiPSC 459 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 336 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 505 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 348 bp overlap
SMARCC1 5 datasets
ChIP DE_D1 S15-DE-d1-BAF155-exp1 85 bp overlap
ChIP ESC S25-ESC-d0-BAF155-exp1 381 bp overlap
ChIP Hep-G2 GSE108514.SMARCC1.Hep-G2 317 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 227 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 493 bp overlap
SMC1 1 dataset
ChIP HCAEC GSE101921.SMC1.HCAEC 532 bp overlap
SP1 2 datasets
Motif ES_0h ES_0h-SP1_MA0079.5 9 bp overlap
ChIP Hep-G2 ENCSR460YAM.SP1.Hep-G2 121 bp overlap
SP2 1 dataset
Motif ES_0h ES_0h-SP2_MA0516.3 9 bp overlap
SP4 1 dataset
Motif ES_0h ES_0h-SP4_MA0685.2 9 bp overlap
SP5 1 dataset
ChIP Hep-G2 ENCSR019NPF.SP5.Hep-G2 159 bp overlap
SP9 1 dataset
Motif ES_0h ES_0h-SP9_MA1564.2 10 bp overlap
SREBP2 2 datasets
ChIP HCC70 GSE126380.SREBP2.HCC70 553 bp overlap
ChIP HCC70_XY018 GSE126380.SREBP2.HCC70_XY018 555 bp overlap
STAT3 1 dataset
ChIP WA01 ERP004237.STAT3.WA01 436 bp overlap
SUZ12 3 datasets
ChIP CRL-7250_shSS18 GSE108025.SUZ12.CRL-7250_shSS18 359 bp overlap
ChIP CRL-7250_shSS18-SSX GSE108025.SUZ12.CRL-7250_shSS18-SSX 362 bp overlap
ChIP hiPSC_WT GSE124903.SUZ12.hiPSC_WT 231 bp overlap
TAF1 1 dataset
ChIP Hep-G2 ENCSR918OKK.TAF1.Hep-G2 343 bp overlap
TAF15 2 datasets
ChIP Hep-G2 GSE120104.TAF15.Hep-G2 219 bp overlap
ChIP Hep-G2 ENCSR825MZS.TAF15.Hep-G2 199 bp overlap
TAL1 1 dataset
ChIP ME-1 GSE46044.TAL1.ME-1 226 bp overlap
TEAD1 1 dataset
ChIP H69 GSE62274.TEAD1.H69 151 bp overlap
TEAD4 1 dataset
ChIP SK-MEL-147 GSE94488.TEAD4.SK-MEL-147 225 bp overlap
TFAP2A 2 datasets
Motif DE_12h DE_12h-TFAP2A_MA0003.5 9 bp overlap
ChIP WA09 GSE105081.TFAP2A.WA09 145 bp overlap
TFAP2B 1 dataset
Motif DE_12h DE_12h-TFAP2B_MA0812.2 9 bp overlap
TFAP2C 3 datasets
Motif DE_12h DE_12h-TFAP2C_MA0814.3 9 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 574 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 574 bp overlap
TFAP2E 1 dataset
Motif DE_12h DE_12h-TFAP2E_MA1569.2 9 bp overlap
TFDP2 1 dataset
ChIP Hep-G2 ENCSR069JKP.TFDP2.Hep-G2 334 bp overlap
TFE3 1 dataset
ChIP Hep-G2 ENCSR589SNT.TFE3.Hep-G2 201 bp overlap
TFIIIC 1 dataset
ChIP HEK293 GSE119418.TFIIIC.HEK293 267 bp overlap
TP63 2 datasets
ChIP keratinocyte GSE33571.TP63.keratinocyte 270 bp overlap
ChIP keratinocyte_diff GSE33571.TP63.keratinocyte_diff 164 bp overlap
TRIM25 1 dataset
ChIP BT-549 GSE79588.TRIM25.BT-549 384 bp overlap
UBTF 1 dataset
ChIP HepG2 ENCFF424RNN 574 bp overlap
WDR5 1 dataset
ChIP SMMC-7721 GSE126982.WDR5.SMMC-7721 502 bp overlap
YY1 1 dataset
ChIP Huh-7 GSE97411.YY1.Huh-7 309 bp overlap
ZBED4 2 datasets
Motif ES_0h ES_0h-ZBED4_MA2328.1 10 bp overlap
ChIP Hep-G2 ENCSR409PMR.ZBED4.Hep-G2 129 bp overlap
ZBTB7A 2 datasets
ChIP Hep-G2 ENCSR000BQA.ZBTB7A.Hep-G2 159 bp overlap
ChIP K-562 ENCSR000BME.ZBTB7A.K-562 276 bp overlap
ZFP64 1 dataset
ChIP Hep-G2 ENCSR487CPI.ZFP64.Hep-G2 169 bp overlap
ZFX 2 datasets
ChIP HEK293T_FLAG GSE145160.ZFX.HEK293T_FLAG 527 bp overlap
ChIP HepG2 ENCFF016NZF 393 bp overlap
ZFY 2 datasets
ChIP Hep-G2 ENCSR949OEV.ZFY.Hep-G2 536 bp overlap
ChIP HepG2 ENCFF106ELT 325 bp overlap
ZIC4 1 dataset
Motif DE_12h DE_12h-ZIC4_MA0751.2 14 bp overlap
ZNF148 1 dataset
Motif DE_12h DE_12h-ZNF148_MA1653.2 10 bp overlap
ZNF3 1 dataset
ChIP K-562 ENCSR195QFV.ZNF3.K-562 153 bp overlap
ZNF343 1 dataset
Motif ES_0h ES_0h-ZNF343_MA1711.2 16 bp overlap
ZNF407 3 datasets
ChIP Hep-G2 ENCSR005WGY.ZNF407.Hep-G2 351 bp overlap
ChIP HepG2 ENCFF537FDC 535 bp overlap
ChIP HepG2 ENCFF537FDC 445 bp overlap
ZNF610 1 dataset
Motif DE_12h DE_12h-ZNF610_MA1713.2 10 bp overlap
ZNF687 2 datasets
ChIP HepG2 ENCFF653WIX 250 bp overlap
ChIP HepG2 ENCFF653WIX 574 bp overlap
ZNF93 1 dataset
Motif DE_12h DE_12h-ZNF93_MA1721.2 14 bp overlap
Zfx 1 dataset
Motif DE_12h DE_12h-Zfx_MA0146.3 10 bp overlap
Zic2 1 dataset
Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap
Zic3 1 dataset
Motif DE_12h DE_12h-Zic3_MA0697.3 7 bp overlap