CBFB
core-binding factor subunit beta | PEBP2B

The protein encoded by this gene is the beta subunit of a heterodimeric core-binding transcription factor belonging to the PEBP2/CBF transcription factor family which master-regulates a host of genes specific to hematopoiesis (e.g., RUNX1) and osteogenesis (e.g., RUNX2). The beta subunit is a non-DNA binding regulatory subunit; it allosterically enhances DNA binding by alpha subunit as the complex binds to the core site of various enhancers and promoters, including murine leukemia virus, polyomavirus enhancer, T-cell receptor enhancers and GM-CSF promoters. Alternative splicing generates two mRNA variants, each encoding a distinct carboxyl terminus. In some cases, a pericentric inversion of chromosome 16 [inv(16)(p13q22)] produces a chimeric transcript consisting of the N terminus of core-binding factor beta in a fusion with the C-terminal portion of the smooth muscle myosin heavy chain 11. This chromosomal rearrangement is associated with acute myeloid leukemia of the M4Eo subtype. Two transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jul 2008]

Member of: DE-2
Biological processes 23 terms
Expression (TPM)
CBFB — as a Regulated Gene

TFs regulating CBFB 0 TFs

Transcription factors with Perturb-seq knockdown data for CBFB. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = CBFB upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.

Data: Effect:
TF Mean coef Binding Outlier TF→Gene link

Elements linked to CBFB

Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of CBFB, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.

Accessibility Element Dist. to TSS Link type TFs
chr16:66,751,110–66,752,176 277.6 kb Distal (>10kb) Multiome 734
chr16:66,830,425–66,831,324 198.5 kb Distal (>10kb) Multiome 934
chr16:66,844,097–66,844,861 185.0 kb Distal (>10kb) Multiome 211
chr16:66,872,965–66,873,714 156.1 kb Distal (>10kb) Multiome 836
chr16:66,880,003–66,881,270 148.9 kb Distal (>10kb) Multiome 1020
chr16:66,924,739–66,925,515 104.4 kb Distal (>10kb) Multiome 395
chr16:66,933,957–66,934,849 95.0 kb Distal (>10kb) Multiome 931
chr16:67,000,412–67,001,423 28.4 kb Distal (>10kb) Multiome 270
chr16:67,013,778–67,014,584 15.3 kb Distal (>10kb) Multiome 594
chr16:67,017,916–67,018,379 11.3 kb Distal (>10kb) Multiome 530
chr16:67,028,567–67,029,938 376 bp At TSS Multiome 1003
chr16:67,109,102–67,110,434 80.4 kb Distal (>10kb) Multiome 895
chr16:67,149,282–67,151,406 121.3 kb Distal (>10kb) Multiome HiCAR 693
chr16:67,154,687–67,155,820 126.1 kb Distal (>10kb) Multiome HiCAR 593
chr16:67,160,628–67,161,206 131.6 kb Distal (>10kb) Multiome HiCAR 524
chr16:67,162,969–67,163,815 134.0 kb Distal (>10kb) Multiome HiCAR 238
chr16:67,169,105–67,171,287 140.2 kb Distal (>10kb) Multiome HiCAR 813
chr16:67,173,849–67,174,861 144.9 kb Distal (>10kb) Multiome 809
chr16:67,177,863–67,178,664 148.9 kb Distal (>10kb) Multiome 544
chr16:67,183,333–67,184,856 154.4 kb Distal (>10kb) Multiome HiCAR 886
chr16:67,185,256–67,185,693 156.2 kb Distal (>10kb) Multiome HiCAR 740
chr16:67,191,949–67,192,449 162.7 kb Distal (>10kb) Multiome 781
chr16:67,198,940–67,200,211 170.3 kb Distal (>10kb) Multiome 325
chr16:67,226,487–67,227,575 197.6 kb Distal (>10kb) Multiome 909
chr16:67,236,439–67,237,267 207.4 kb Distal (>10kb) Multiome 195
chr16:67,245,855–67,247,890 218.1 kb Distal (>10kb) Multiome 1077
chr16:67,248,206–67,249,338 219.7 kb Distal (>10kb) Multiome 467
chr16:67,262,177–67,262,869 233.1 kb Distal (>10kb) Multiome 24
chr16:67,278,724–67,279,792 250.0 kb Distal (>10kb) Multiome 869
chr16:67,326,413–67,327,343 297.4 kb Distal (>10kb) Multiome 585

Genome Browser

Genomic view of the CBFB locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.

chr16:66,741,110 – 67,337,343
Proximal 1 kb Distal 10 kb Multiome HiCAR ATAC-seq RNA-seq