chr9 : 136,946,106 136,946,610
504 bp 123 TFs 3 linked genes
This 504 bp open chromatin element is linked to C8G, FBXW5, and LCN12 and is bound by 123 transcription factors.
Linked Genes
3 genes
Distance
Gene Expression Dist. to TSS Distance Link type
C8G 922 bp At TSS Proximity
FBXW5 1.5 kb Proximal Proximity
LCN12 5.7 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:136,941,106 – 136,951,610
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
123 transcription factors
Source
Cell type
AATF 1 dataset
ChIP NALM-6 GSE93626.AATF.NALM-6 348 bp overlap
AFF4 1 dataset
ChIP MCF-7 GSE144036.AFF4.MCF-7 261 bp overlap
AGO1 6 datasets
ChIP Hep-G2 GSE120104.AGO1.Hep-G2 115 bp overlap
ChIP Hep-G2 GSE120104.AGO1.Hep-G2 338 bp overlap
ChIP HepG2 ENCFF358CXO 209 bp overlap
ChIP K-562 ENCSR641BSL.AGO1.K-562 134 bp overlap
ChIP K-562 GSE120104.AGO1.K-562 77 bp overlap
ChIP K-562 ENCSR641BSL.AGO1.K-562 214 bp overlap
AR 3 datasets
ChIP MDA-MB-453 ERP003503.AR.MDA-MB-453 134 bp overlap
ChIP MDA-MB-453 ERP003503.AR.MDA-MB-453 63 bp overlap
ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 378 bp overlap
ARID2 2 datasets
ChIP Aska-SS GSE108025.ARID2.Aska-SS 92 bp overlap
ChIP Aska-SS_shSSX GSE108025.ARID2.Aska-SS_shSSX 372 bp overlap
ARID4A 2 datasets
ChIP Hep-G2 ENCSR386UBO.ARID4A.Hep-G2 243 bp overlap
ChIP HepG2 ENCFF142DIE 416 bp overlap
ATF3 1 dataset
ChIP Hep-G2 ENCSR402ZCY.ATF3.Hep-G2 211 bp overlap
BATF2 2 datasets
ChIP HepG2 ENCFF442RPJ 282 bp overlap
ChIP HepG2 ENCFF442RPJ 501 bp overlap
BORCS8,MEF2B 1 dataset
ChIP HepG2 ENCFF255VGS 235 bp overlap
BRD4 10 datasets
ChIP 22Rv1_DHT-DMSO GSE118247.BRD4.22Rv1_DHT-DMSO 223 bp overlap
ChIP CLL_patient2 GSE109411.BRD4.CLL_patient2 113 bp overlap
ChIP CLL_patient3 GSE109411.BRD4.CLL_patient3 85 bp overlap
ChIP CLL_patient3_4h_CpG GSE109411.BRD4.CLL_patient3_4h_CpG 236 bp overlap
ChIP CLL_patient3_4h_CpG_BET GSE109411.BRD4.CLL_patient3_4h_CpG_BET 289 bp overlap
ChIP CLL_patient4 GSE109411.BRD4.CLL_patient4 176 bp overlap
ChIP T-47D ERP003925.BRD4.T-47D 284 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 303 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 120 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 273 bp overlap
CBFB 1 dataset
ChIP Hep-G2 ENCSR479RZV.CBFB.Hep-G2 155 bp overlap
CDK9 2 datasets
ChIP HCT-116 GSE72622.CDK9.HCT-116 229 bp overlap
ChIP HCT-116 GSE72622.CDK9.HCT-116 82 bp overlap
CHD1 1 dataset
ChIP HeLa-S3 ENCSR392EAA.CHD1.HeLa-S3 238 bp overlap
CSRNP1 1 dataset
ChIP HepG2 ENCFF191UYG 277 bp overlap
CTCF 6 datasets
ChIP HCT-116 GSE131606.CTCF.HCT-116 299 bp overlap
ChIP HeLa-S3_biotin GSE108869.CTCF.HeLa-S3_biotin 150 bp overlap
ChIP HepG2 ENCFF757EKU 238 bp overlap
ChIP HepG2 ENCFF757EKU 351 bp overlap
ChIP T-47D_Y537S GSE148277.CTCF.T-47D_Y537S 229 bp overlap
ChIP erythroid GSE67783.CTCF.erythroid 116 bp overlap
DMAP1 1 dataset
ChIP Hep-G2 ENCSR670YPQ.DMAP1.Hep-G2 198 bp overlap
DNMT3B 3 datasets
ChIP HUES-8 GSE99346.DNMT3B.HUES-8 139 bp overlap
ChIP HUES-8_TripleKO-TET1-2-3 GSE99346.DNMT3B.HUES-8_TripleKO-TET1-2-3 216 bp overlap
ChIP HUES-8_TripleKO-TET1-2-3 GSE99346.DNMT3B.HUES-8_TripleKO-TET1-2-3 105 bp overlap
E2F6 1 dataset
ChIP K-562 ENCSR000EWJ.E2F6.K-562 115 bp overlap
EED 1 dataset
ChIP HepG2 ENCFF347CCA 272 bp overlap
EGR1 1 dataset
ChIP Hep-G2 ENCSR026GSW.EGR1.Hep-G2 289 bp overlap
FOXK1 1 dataset
ChIP Hep-G2 ENCSR603BJQ.FOXK1.Hep-G2 161 bp overlap
GZF1 1 dataset
ChIP HepG2 ENCFF060TLH 313 bp overlap
HDAC2 2 datasets
ChIP Hep-G2 ENCSR000BMC.HDAC2.Hep-G2 156 bp overlap
ChIP K-562 ENCSR893WSB.HDAC2.K-562 50 bp overlap
HEXIM1 1 dataset
ChIP HCT-116 GSE72622.HEXIM1.HCT-116 99 bp overlap
HIF3A 1 dataset
ChIP Hep-3B2-1-7 GSE129491.HIF3A.Hep-3B2-1-7 328 bp overlap
HMGN3 1 dataset
ChIP K562 ENCFF083BIJ 297 bp overlap
HNRNPL 2 datasets
ChIP Hep-G2 GSE120104.HNRNPL.Hep-G2 176 bp overlap
ChIP HepG2 ENCFF671UYF 130 bp overlap
HNRNPLL 2 datasets
ChIP Hep-G2 ENCSR804HMZ.HNRNPLL.Hep-G2 108 bp overlap
ChIP Hep-G2 GSE120104.HNRNPLL.Hep-G2 94 bp overlap
HOXA3 3 datasets
ChIP Hep-G2 ENCSR999JKC.HOXA3.Hep-G2 254 bp overlap
ChIP Hep-G2 ENCSR999JKC.HOXA3.Hep-G2 102 bp overlap
ChIP HepG2 ENCFF374TCI 186 bp overlap
JUN 2 datasets
ChIP 786-O GSE86092.JUN.786-O 471 bp overlap
ChIP Karpas-299 GSE151413.JUN.Karpas-299 150 bp overlap
KDM3A 4 datasets
ChIP Hep-G2 ENCSR387JKT.KDM3A.Hep-G2 70 bp overlap
ChIP Hep-G2 ENCSR387JKT.KDM3A.Hep-G2 151 bp overlap
ChIP HepG2 ENCFF077DXQ 184 bp overlap
ChIP HepG2 ENCFF077DXQ 466 bp overlap
KDM5B 2 datasets
ChIP HepG2 ENCFF706LUI 345 bp overlap
ChIP SUM185_SHCTCF GSE46055.KDM5B.SUM185_SHCTCF 79 bp overlap
KDM6B 1 dataset
ChIP CUTLL1 GSE56694.KDM6B.CUTLL1 131 bp overlap
KLF1 1 dataset
ChIP HEK293 ENCSR859BMR.KLF1.HEK293 162 bp overlap
KLF3 1 dataset
ChIP keratinocyte GSE140991.KLF3.keratinocyte 69 bp overlap
KMT2A 1 dataset
ChIP Hep-G2 ENCSR692GFR.KMT2A.Hep-G2 254 bp overlap
MAF 1 dataset
ChIP CD4_Th1 GSE72266.MAF.CD4_Th1 166 bp overlap
MAX 7 datasets
ChIP Hep-G2 ENCSR000BTM.MAX.Hep-G2 193 bp overlap
ChIP Hep-G2 ENCSR000EDS.MAX.Hep-G2 166 bp overlap
ChIP HepG2 ENCFF507HCX 199 bp overlap
ChIP K-562 ENCSR000EFV.MAX.K-562 59 bp overlap
ChIP P493-6_24HR GSE125863.MAX.P493-6_24HR 317 bp overlap
ChIP liver ENCFF092GVW 122 bp overlap
ChIP liver ENCSR847DIT.MAX.liver 97 bp overlap
MAZ 1 dataset
ChIP HeLa-S3 ENCSR000ECL.MAZ.HeLa-S3 106 bp overlap
MBD3 1 dataset
ChIP MCF-7 GSE44737.MBD3.MCF-7 248 bp overlap
MED1 2 datasets
ChIP HUVEC-C_siCTL GSE124892.MED1.HUVEC-C_siCTL 144 bp overlap
ChIP Hep-G2 ENCSR959XNY.MED1.Hep-G2 158 bp overlap
MNT 3 datasets
ChIP Hep-G2 ENCSR730TBC.MNT.Hep-G2 98 bp overlap
ChIP HepG2 ENCFF502ATV 225 bp overlap
ChIP K562 ENCFF820IGH 357 bp overlap
MTA1 2 datasets
ChIP Hep-G2 ENCSR983KRB.MTA1.Hep-G2 118 bp overlap
ChIP Hep-G2 ENCSR983KRB.MTA1.Hep-G2 239 bp overlap
MXD4 2 datasets
ChIP Hep-G2 ENCSR441KFW.MXD4.Hep-G2 130 bp overlap
ChIP HepG2 ENCFF308ELA 290 bp overlap
MYC 1 dataset
ChIP HepG2 ENCFF575FXK 280 bp overlap
MYCN 3 datasets
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 81 bp overlap
ChIP Kelly GSE94782.MYCN.Kelly 63 bp overlap
ChIP NB-1643 GSE138295.MYCN.NB-1643 157 bp overlap
MYOD1 1 dataset
ChIP IMR-90_GM GSE128527.MYOD1.IMR-90_GM 160 bp overlap
NELFE 1 dataset
ChIP K-562_NHS GSE112379.NELFE.K-562_NHS 436 bp overlap
NFAT5 1 dataset
ChIP Hep-G2 ENCSR565BVI.NFAT5.Hep-G2 205 bp overlap
NFKB2 1 dataset
ChIP HepG2 ENCFF165NTY 225 bp overlap
NFYC 1 dataset
ChIP Hep-G2 ENCSR569ARC.NFYC.Hep-G2 168 bp overlap
NONO 1 dataset
ChIP HepG2 ENCFF361UQH 369 bp overlap
PATZ1 1 dataset
ChIP HepG2 ENCFF723PFC 127 bp overlap
PCBP1 2 datasets
ChIP Hep-G2 GSE120104.PCBP1.Hep-G2 237 bp overlap
ChIP HepG2 ENCFF447SRJ 500 bp overlap
PHF8 1 dataset
ChIP Hep-G2 ENCSR604VAE.PHF8.Hep-G2 342 bp overlap
PLAG1 1 dataset
ChIP K-562 GSE111469.PLAG1.K-562 260 bp overlap
POLR2G 3 datasets
ChIP K562 ENCFF047BLG 458 bp overlap
ChIP K562 ENCFF648YPL 51 bp overlap
ChIP K562 ENCFF648YPL 458 bp overlap
POU2F1 1 dataset
ChIP T-47D_D538G GSE148277.POU2F1.T-47D_D538G 209 bp overlap
RBFOX2 5 datasets
ChIP HepG2 ENCFF554DMZ 348 bp overlap
ChIP HepG2 ENCFF939HTZ 348 bp overlap
ChIP K-562 GSE120104.RBFOX2.K-562 200 bp overlap
ChIP K-562 GSE120104.RBFOX2.K-562 128 bp overlap
ChIP K562 ENCFF967GRF 249 bp overlap
RBM39 2 datasets
ChIP Hep-G2 ENCSR339JTP.RBM39.Hep-G2 381 bp overlap
ChIP Hep-G2 GSE120104.RBM39.Hep-G2 381 bp overlap
RELA 2 datasets
ChIP HEK293_TNF-1h GSE75562.RELA.HEK293_TNF-1h 100 bp overlap
ChIP HEK293_TNF-1h GSE75562.RELA.HEK293_TNF-1h 317 bp overlap
RORC 2 datasets
ChIP HCC70 GSE126380.RORC.HCC70 476 bp overlap
ChIP HCC70_XY018 GSE126380.RORC.HCC70_XY018 245 bp overlap
SAFB 1 dataset
ChIP K562 ENCFF765XSF 371 bp overlap
SMAD1 4 datasets
ChIP Hep-G2 ENCSR213QOZ.SMAD1.Hep-G2 297 bp overlap
ChIP Hep-G2 ENCSR213QOZ.SMAD1.Hep-G2 51 bp overlap
ChIP HepG2 ENCFF892OZT 451 bp overlap
ChIP HepG2 ENCFF892OZT 252 bp overlap
SP5 2 datasets
ChIP Hep-G2 ENCSR019NPF.SP5.Hep-G2 275 bp overlap
ChIP HepG2 ENCFF931FHV 234 bp overlap
SREBP2 2 datasets
ChIP HCC70 GSE126380.SREBP2.HCC70 504 bp overlap
ChIP HCC70_XY018 GSE126380.SREBP2.HCC70_XY018 448 bp overlap
SRSF1 3 datasets
ChIP Hep-G2 GSE120104.SRSF1.Hep-G2 250 bp overlap
ChIP HepG2 ENCFF509LHO 83 bp overlap
ChIP HepG2 ENCFF509LHO 362 bp overlap
SRSF3 1 dataset
ChIP K-562 GSE120104.SRSF3.K-562 62 bp overlap
SS18 1 dataset
ChIP Aska-SS_BAF47KO1 GSE108025.SS18.Aska-SS_BAF47KO1 117 bp overlap
STAT3 1 dataset
ChIP FaDu_BB608 GSE78212.STAT3.FaDu_BB608 450 bp overlap
TAF1 1 dataset
ChIP Hep-G2 ENCSR918OKK.TAF1.Hep-G2 191 bp overlap
TAF15 3 datasets
ChIP Hep-G2 ENCSR825MZS.TAF15.Hep-G2 504 bp overlap
ChIP Hep-G2 GSE120104.TAF15.Hep-G2 504 bp overlap
ChIP HepG2 ENCFF406BOT 147 bp overlap
TEAD3 1 dataset
ChIP HepG2 ENCFF054UUL 268 bp overlap
TEAD4 1 dataset
ChIP SNU-216 GSE44416.TEAD4.SNU-216 155 bp overlap
TFAP2C 3 datasets
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 504 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 109 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 200 bp overlap
TFAP4 1 dataset
ChIP HepG2 ENCFF932XOY 273 bp overlap
TFDP1 1 dataset
ChIP HepG2 ENCFF717XKC 209 bp overlap
TP63 2 datasets
ChIP breast-organoid GSE113909.TP63.breast-organoid 164 bp overlap
ChIP keratinocyte_diff GSE33571.TP63.keratinocyte_diff 185 bp overlap
TRIM28 1 dataset
ChIP HCT-116 GSE72622.TRIM28.HCT-116 189 bp overlap
USF1 3 datasets
ChIP Hep-G2 ENCSR000BGM.USF1.Hep-G2 60 bp overlap
ChIP HepG2 ENCFF201JKA 172 bp overlap
ChIP HepG2 ENCFF807KYJ 101 bp overlap
USF2 1 dataset
ChIP Hep-G2 GSE97661.USF2.Hep-G2 125 bp overlap
YY1 1 dataset
ChIP Huh-7 GSE97411.YY1.Huh-7 383 bp overlap
ZBTB4 1 dataset
ChIP HepG2 ENCFF828GZH 504 bp overlap
ZBTB40 1 dataset
ChIP HepG2 ENCFF130IRD 461 bp overlap
ZBTB48 2 datasets
ChIP U2OS_ZBTB48-KO GSE96776.ZBTB48.U2OS_ZBTB48-KO 250 bp overlap
ChIP U2OS_ZBTB48-KO GSE96776.ZBTB48.U2OS_ZBTB48-KO 120 bp overlap
ZBTB7A 2 datasets
ChIP K-562 ENCSR000BME.ZBTB7A.K-562 156 bp overlap
ChIP K-562 ENCSR000BME.ZBTB7A.K-562 129 bp overlap
ZEB1 2 datasets
ChIP GM12878 ENCSR000BND.ZEB1.GM12878 106 bp overlap
ChIP RKO GSE88734.ZEB1.RKO 109 bp overlap
ZFX 3 datasets
ChIP HEK293T_FLAG GSE145160.ZFX.HEK293T_FLAG 502 bp overlap
ChIP HepG2 ENCFF016NZF 467 bp overlap
ChIP K562 ENCFF536AJO 497 bp overlap
ZFY 1 dataset
ChIP Hep-G2 ENCSR949OEV.ZFY.Hep-G2 60 bp overlap
ZGPAT 1 dataset
ChIP Hep-G2 ENCSR704IGU.ZGPAT.Hep-G2 165 bp overlap
ZHX1 2 datasets
ChIP HeLa-S3 ENCSR887MXT.ZHX1.HeLa-S3 169 bp overlap
ChIP HeLa-S3 ENCSR887MXT.ZHX1.HeLa-S3 55 bp overlap
ZHX2 2 datasets
ChIP Hep-G2 ENCSR407BEZ.ZHX2.Hep-G2 182 bp overlap
ChIP HepG2 ENCFF878CNQ 186 bp overlap
ZNF224 1 dataset
ChIP HepG2 ENCFF298FFZ 309 bp overlap
ZNF235 1 dataset
ChIP HepG2 ENCFF831SQZ 161 bp overlap
ZNF263 2 datasets
ChIP Hep-G2 ENCSR313MMD.ZNF263.Hep-G2 108 bp overlap
ChIP K-562 ENCSR000EWN.ZNF263.K-562 229 bp overlap
ZNF274 2 datasets
ChIP Hep-G2 ENCSR871VNN.ZNF274.Hep-G2 173 bp overlap
ChIP Hep-G2 ENCSR871VNN.ZNF274.Hep-G2 163 bp overlap
ZNF3 1 dataset
ChIP K-562 ENCSR195QFV.ZNF3.K-562 255 bp overlap
ZNF485 1 dataset
ChIP HepG2 ENCFF360UPH 238 bp overlap
ZNF589 1 dataset
ChIP HepG2 ENCFF700GKM 275 bp overlap
ZNF687 1 dataset
ChIP HepG2 ENCFF653WIX 504 bp overlap
ZNF711 1 dataset
ChIP HEK293T GSE145160.ZNF711.HEK293T 83 bp overlap
ZNF724 1 dataset
ChIP HepG2 ENCFF318TJD 154 bp overlap