chr3 : 6,507,641 – 6,507,900
259 bp 128 TFs 1 linked gene
This 259 bp open chromatin element is linked to ENSG00000189229 and is bound by 128 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
ENSG00000189229 at TSS At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:6,502,641 – 6,512,900
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
128 transcription factors
Source
Cell type
ARID1B 1 dataset
ChIP K562 ENCFF938UXQ 259 bp overlap
ATF7 2 datasets
ChIP K562 ENCFF308SKS 259 bp overlap
ChIP K562 ENCFF308SKS 225 bp overlap
Ahr::Arnt 1 dataset
Motif DE_12h DE_12h-AhrArnt_MA0006.2 5 bp overlap
BCLAF1 1 dataset
ChIP K562 ENCFF936NCS 119 bp overlap
BRD2 11 datasets
ChIP HCC1806_BAZ2BsiRNA GSE116879.BRD2.HCC1806_BAZ2BsiRNA 259 bp overlap
ChIP HCC1806_NTsiRNA GSE116879.BRD2.HCC1806_NTsiRNA 259 bp overlap
ChIP K-562_DMSO GSE138084.BRD2.K-562_DMSO 259 bp overlap
ChIP K-562_DMSO-IFNG GSE138084.BRD2.K-562_DMSO-IFNG 259 bp overlap
ChIP MDA-MB-231_BAZ2AsiRNA GSE116879.BRD2.MDA-MB-231_BAZ2AsiRNA 188 bp overlap
ChIP MDA-MB-231_BAZ2BsiRNA GSE116879.BRD2.MDA-MB-231_BAZ2BsiRNA 67 bp overlap
ChIP MDA-MB-231_NTsiRNA GSE116879.BRD2.MDA-MB-231_NTsiRNA 259 bp overlap
ChIP SUM159PT_DMSO GSE116879.BRD2.SUM159PT_DMSO 259 bp overlap
ChIP SUM159PT_DMSO GSE131097.BRD2.SUM159PT_DMSO 259 bp overlap
ChIP SUM159PT_MGSK2801 GSE116879.BRD2.SUM159PT_MGSK2801 79 bp overlap
ChIP SUM159PT_MGSK2801 GSE116879.BRD2.SUM159PT_MGSK2801 54 bp overlap
BRD3 1 dataset
ChIP K-562_iBET-BD2-IFNG GSE138084.BRD3.K-562_iBET-BD2-IFNG 186 bp overlap
BRD4 14 datasets
ChIP K562 ENCFF092PWQ 259 bp overlap
ChIP MDA-MB-231_MGSK2801 GSE116879.BRD4.MDA-MB-231_MGSK2801 70 bp overlap
ChIP MDA-MB-231_MGSK2801_rDNA GSE116879.BRD4.MDA-MB-231_MGSK2801_rDNA 70 bp overlap
ChIP SUM159PT_100nMtrametinib_1h GSE87418.BRD4.SUM159PT_100nMtrametinib_1h 259 bp overlap
ChIP SUM159PT_100nMtrametinib_4h GSE87418.BRD4.SUM159PT_100nMtrametinib_4h 259 bp overlap
ChIP SUM159PT_100nMtrametinib_8h GSE87418.BRD4.SUM159PT_100nMtrametinib_8h 259 bp overlap
ChIP SUM159PT_30nMbortezomib_8h GSE87418.BRD4.SUM159PT_30nMbortezomib_8h 259 bp overlap
ChIP SUM159PT_DMSO GSE131097.BRD4.SUM159PT_DMSO 96 bp overlap
ChIP SUM159PT_DMSO_48h GSE87418.BRD4.SUM159PT_DMSO_48h 259 bp overlap
ChIP SUM159PT_DMSO_72h GSE87418.BRD4.SUM159PT_DMSO_72h 259 bp overlap
ChIP SUM159PT_DMSO_8h GSE87418.BRD4.SUM159PT_DMSO_8h 259 bp overlap
ChIP SUM159PT_Dox_48h GSE87418.BRD4.SUM159PT_Dox_48h 160 bp overlap
ChIP SUM159PT_shMYC_DMSO_48h GSE87418.BRD4.SUM159PT_shMYC_DMSO_48h 259 bp overlap
ChIP SUM159PT_shMYC_dox_48h GSE87418.BRD4.SUM159PT_shMYC_dox_48h 61 bp overlap
BRD9 2 datasets
ChIP K-562 ENCSR177XCS.BRD9.K-562 86 bp overlap
ChIP K562 ENCFF480JXZ 198 bp overlap
CBFB 1 dataset
ChIP ME-1 GSE46044.CBFB.ME-1 169 bp overlap
CEBPG 1 dataset
ChIP K562 ENCFF956TPS 235 bp overlap
CREB1 1 dataset
ChIP K562 ENCFF175LMX 259 bp overlap
CREM 1 dataset
ChIP K562 ENCFF180STA 245 bp overlap
CTCFL 1 dataset
ChIP K562 ENCFF883NXC 129 bp overlap
CXXC5 1 dataset
ChIP K562 ENCFF497CZN 192 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF364PUR 211 bp overlap
DDX20 1 dataset
ChIP K562 ENCFF205RDN 224 bp overlap
DMBX1 1 dataset
ChIP K562 ENCFF972HXB 259 bp overlap
E2F1 6 datasets
Motif DE_12h DE_12h-E2F1_MA0024.3 12 bp overlap
ChIP HeLa-S3 ENCFF170ZHA 259 bp overlap
ChIP HeLa-S3 ENCFF877AEN 259 bp overlap
ChIP K-562 ENCSR563LLO.E2F1.K-562 259 bp overlap
ChIP K562 ENCFF163BSY 259 bp overlap
ChIP K562 ENCFF749FMR 259 bp overlap
E2F2 1 dataset
Motif DE_12h DE_12h-E2F2_MA0864.3 13 bp overlap
E2F3 1 dataset
ChIP K562 ENCFF922ILX 259 bp overlap
E2F4 4 datasets
Motif DE_12h DE_12h-E2F4_MA0470.3 13 bp overlap
ChIP HeLa-S3 ENCFF669WYW 259 bp overlap
ChIP K-562 ENCSR000EWL.E2F4.K-562 259 bp overlap
ChIP K562 ENCFF950BEB 160 bp overlap
E2F5 2 datasets
ChIP K562 ENCFF688PUB 259 bp overlap
ChIP K562 ENCFF688PUB 259 bp overlap
E2F6 6 datasets
Motif DE_12h DE_12h-E2F6_MA0471.3 8 bp overlap
Motif DE_12h DE_12h-E2F6_MA0471.3 8 bp overlap
Motif DE_12h DE_12h-E2F6_MA0471.3 8 bp overlap
ChIP K-562 ENCSR000BLI.E2F6.K-562 193 bp overlap
ChIP K-562 ENCSR000EWJ.E2F6.K-562 206 bp overlap
ChIP K562 ENCFF136LTS 198 bp overlap
E2F7 1 dataset
ChIP K562 ENCFF212JSU 255 bp overlap
E2F8 3 datasets
Motif DE_12h DE_12h-E2F8_MA0865.3 9 bp overlap
ChIP K-562 ENCSR953DVM.E2F8.K-562 155 bp overlap
ChIP K562 ENCFF985IKY 180 bp overlap
E4F1 1 dataset
ChIP K562 ENCFF622HMZ 259 bp overlap
EGR1 1 dataset
ChIP K562 ENCFF006PJY 209 bp overlap
ELF4 1 dataset
ChIP K562 ENCFF200OMJ 239 bp overlap
EP400 3 datasets
ChIP K-562 ENCSR817QKV.EP400.K-562 259 bp overlap
ChIP K562 ENCFF850OZQ 259 bp overlap
ChIP K562 ENCFF850OZQ 259 bp overlap
ESR1 1 dataset
ChIP MCF-7_Veh_OA GSE93510.ESR1.MCF-7_Veh_OA 259 bp overlap
FEZF2 1 dataset
Motif DE_12h DE_12h-FEZF2_MA2341.1 8 bp overlap
GABPA 1 dataset
ChIP K562 ENCFF139LXS 259 bp overlap
GTF2E2 1 dataset
ChIP K562 ENCFF741URT 259 bp overlap
GTF2F1 2 datasets
ChIP K562 ENCFF485ALN 245 bp overlap
ChIP K562 ENCFF940JZP 259 bp overlap
HCFC1 1 dataset
ChIP K562 ENCFF959WVM 107 bp overlap
HDAC1 1 dataset
ChIP K562 ENCFF968WBH 259 bp overlap
HMGN3 1 dataset
ChIP K562 ENCFF083BIJ 259 bp overlap
INO80 1 dataset
ChIP Huh-7 GSE97411.INO80.Huh-7 259 bp overlap
INTS11 1 dataset
ChIP HeLa GSE125534.INTS11.HeLa 84 bp overlap
IRF7 1 dataset
Motif DE_12h DE_12h-IRF7_MA0772.2 13 bp overlap
Irf1 1 dataset
Motif DE_12h DE_12h-Irf1_MA0050.4 11 bp overlap
KLF10 1 dataset
Motif DE_12h DE_12h-KLF10_MA1511.2 9 bp overlap
KLF12 1 dataset
Motif DE_12h DE_12h-KLF12_MA0742.2 9 bp overlap
KLF14 1 dataset
Motif DE_12h DE_12h-KLF14_MA0740.2 9 bp overlap
KLF16 1 dataset
Motif DE_12h DE_12h-KLF16_MA0741.1 11 bp overlap
KLF5 1 dataset
Motif DE_12h DE_12h-KLF5_MA0599.1 10 bp overlap
KLF7 1 dataset
Motif DE_12h DE_12h-KLF7_MA1959.2 8 bp overlap
L3MBTL2 3 datasets
ChIP K-562 ENCSR530XQI.L3MBTL2.K-562 259 bp overlap
ChIP K562 ENCFF320EQC 258 bp overlap
ChIP K562 ENCFF320EQC 212 bp overlap
LCOR 1 dataset
ChIP K562 ENCFF340MHH 239 bp overlap
LEF1 2 datasets
ChIP K562 ENCFF198WCP 157 bp overlap
ChIP K562 ENCFF198WCP 195 bp overlap
MAX 1 dataset
ChIP K562 ENCFF524IJO 195 bp overlap
MAZ 1 dataset
ChIP K562 ENCFF809XHP 259 bp overlap
MEF2C 1 dataset
Motif DE_12h DE_12h-MEF2C_MA0497.2 11 bp overlap
MEF2D 1 dataset
ChIP K562 ENCFF392LDT 228 bp overlap
MGA 1 dataset
ChIP K562 ENCFF140CEX 251 bp overlap
MITF 2 datasets
ChIP K-562 ENCSR797SWM.MITF.K-562 78 bp overlap
ChIP K562 ENCFF731XJJ 209 bp overlap
MNT 3 datasets
ChIP K562 ENCFF342DNS 259 bp overlap
ChIP K562 ENCFF820IGH 259 bp overlap
ChIP K562 ENCFF820IGH 180 bp overlap
MYC 1 dataset
ChIP K562 ENCFF988ZRU 259 bp overlap
NCOR1 2 datasets
ChIP K562 ENCFF788MPU 259 bp overlap
ChIP K562 ENCFF866HRM 259 bp overlap
NELFA 4 datasets
ChIP HeLa_1h_Flavo-35min-H2O2 GSE93931.NELFA.HeLa_1h_Flavo-35min-H2O2 79 bp overlap
ChIP HeLa_Flavo-35min-H2O2 GSE100742.NELFA.HeLa_Flavo-35min-H2O2 79 bp overlap
ChIP K-562_HS GSE112379.NELFA.K-562_HS 259 bp overlap
ChIP K-562_NHS GSE112379.NELFA.K-562_NHS 259 bp overlap
NELFE 4 datasets
ChIP HeLa GSE125534.NELFE.HeLa 79 bp overlap
ChIP HeLa_DOX GSE125534.NELFE.HeLa_DOX 77 bp overlap
ChIP K-562_HS GSE112379.NELFE.K-562_HS 247 bp overlap
ChIP K-562_NHS GSE112379.NELFE.K-562_NHS 100 bp overlap
NFRKB 3 datasets
ChIP K-562 ENCSR996ESX.NFRKB.K-562 259 bp overlap
ChIP K562 ENCFF057YFW 259 bp overlap
ChIP K562 ENCFF221WAF 195 bp overlap
NR3C1 1 dataset
ChIP K562 ENCFF312VLU 236 bp overlap
NRF1 2 datasets
ChIP K562 ENCFF791UHF 259 bp overlap
ChIP K562 ENCFF791UHF 259 bp overlap
OGG1 3 datasets
ChIP HEK293 GSE89017.OGG1.HEK293 259 bp overlap
ChIP HEK293_15min GSE89017.OGG1.HEK293_15min 254 bp overlap
ChIP HEK293_60_min GSE89017.OGG1.HEK293_60_min 259 bp overlap
PAX2 2 datasets
Motif DE_12h DE_12h-PAX2_MA0067.3 16 bp overlap
Motif DE_12h DE_12h-PAX2_MA0067.3 16 bp overlap
PAX8 1 dataset
Motif DE_12h DE_12h-PAX8_MA2094.1 16 bp overlap
PAX9 1 dataset
Motif DE_12h DE_12h-PAX9_MA0781.2 16 bp overlap
PHF8 2 datasets
ChIP K-562 ENCSR000AQH.PHF8.K-562 70 bp overlap
ChIP K562 ENCFF217UCA 120 bp overlap
PML 2 datasets
ChIP K-562 ENCSR000BQY.PML.K-562 81 bp overlap
ChIP K562 ENCFF801LKH 259 bp overlap
POLR2A 9 datasets
ChIP HeLa-S3 ENCFF224LWS 177 bp overlap
ChIP HeLa-S3 ENCFF773DNG 256 bp overlap
ChIP K562 ENCFF137JSF 259 bp overlap
ChIP K562 ENCFF215CWW 259 bp overlap
ChIP K562 ENCFF262YXJ 259 bp overlap
ChIP K562 ENCFF514URW 259 bp overlap
ChIP K562 ENCFF757TUO 259 bp overlap
ChIP K562 ENCFF836GHX 251 bp overlap
ChIP body of pancreas ENCFF501FEC 259 bp overlap
POLR2B 1 dataset
ChIP K562 ENCFF513ENO 171 bp overlap
POLR2G 2 datasets
ChIP K562 ENCFF047BLG 259 bp overlap
ChIP K562 ENCFF648YPL 259 bp overlap
POLR2H 2 datasets
ChIP K562 ENCFF377NHG 259 bp overlap
ChIP K562 ENCFF377NHG 178 bp overlap
POU2F1 1 dataset
ChIP T-47D_D538G GSE148277.POU2F1.T-47D_D538G 107 bp overlap
RB1 1 dataset
ChIP K562 ENCFF627ZBG 259 bp overlap
RBBP5 2 datasets
ChIP K562 ENCFF070CVK 259 bp overlap
ChIP K562 ENCFF070CVK 259 bp overlap
RBFOX2 2 datasets
ChIP K562 ENCFF196WTG 259 bp overlap
ChIP K562 ENCFF967GRF 259 bp overlap
RNF2 1 dataset
ChIP K562 ENCFF653BQJ 153 bp overlap
RUVBL2 2 datasets
ChIP U2OS GSE130602.RUVBL2.U2OS 259 bp overlap
ChIP U2OS_cordycepin GSE130507.RUVBL2.U2OS_cordycepin 194 bp overlap
SMAD1 1 dataset
ChIP K562 ENCFF104YGG 169 bp overlap
SMAD4 2 datasets
ChIP Caco-2 GSE112946.SMAD4.Caco-2 88 bp overlap
ChIP K562 ENCFF628RBP 206 bp overlap
SMAD5 2 datasets
ChIP K-562 ENCSR000FCD.SMAD5.K-562 106 bp overlap
ChIP K562 ENCFF941FJJ 245 bp overlap
SMARCA4 1 dataset
ChIP K562 ENCFF316MCJ 259 bp overlap
SOX6 2 datasets
ChIP K562 ENCFF059YCJ 259 bp overlap
ChIP K562 ENCFF059YCJ 222 bp overlap
SP1 1 dataset
Motif DE_12h DE_12h-SP1_MA0079.5 9 bp overlap
SP2 2 datasets
Motif DE_12h DE_12h-SP2_MA0516.3 9 bp overlap
Motif DE_12h DE_12h-SP2_MA0516.3 9 bp overlap
SP3 1 dataset
Motif DE_12h DE_12h-SP3_MA0746.3 11 bp overlap
SP4 1 dataset
Motif DE_12h DE_12h-SP4_MA0685.2 9 bp overlap
SP5 1 dataset
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
SP9 1 dataset
Motif DE_12h DE_12h-SP9_MA1564.2 10 bp overlap
STAT3 4 datasets
ChIP T-47D_JC4757 GSE126004.STAT3.T-47D_JC4757 191 bp overlap
ChIP T-47D_JC5054 GSE126004.STAT3.T-47D_JC5054 259 bp overlap
ChIP T-47D_JC5056 GSE126004.STAT3.T-47D_JC5056 259 bp overlap
ChIP T-47D_JC5062 GSE126004.STAT3.T-47D_JC5062 121 bp overlap
SUPT5H 3 datasets
ChIP HeLa GSE125534.SUPT5H.HeLa 95 bp overlap
ChIP HeLa_DOX GSE125534.SUPT5H.HeLa_DOX 86 bp overlap
ChIP K562 ENCFF902PAW 259 bp overlap
Sox6 1 dataset
Motif DE_12h DE_12h-Sox6_MA0515.1 10 bp overlap
Stat2 1 dataset
Motif DE_12h DE_12h-Stat2_MA1623.2 10 bp overlap
TAF1 6 datasets
ChIP HeLa-S3 ENCFF556LCN 247 bp overlap
ChIP HeLa-S3 ENCFF556LCN 134 bp overlap
ChIP HeLa-S3 ENCSR000BHT.TAF1.HeLa-S3 59 bp overlap
ChIP HeLa-S3 ENCSR000BHT.TAF1.HeLa-S3 161 bp overlap
ChIP K-562 ENCSR000BKS.TAF1.K-562 259 bp overlap
ChIP K562 ENCFF491WAE 213 bp overlap
TAF7 1 dataset
ChIP K562 ENCFF314WLE 146 bp overlap
TAF9B 1 dataset
ChIP K562 ENCFF121ZIF 259 bp overlap
TBP 3 datasets
ChIP HeLa-S3 ENCFF715NNJ 146 bp overlap
ChIP K-562 GSE55306.TBP.K-562 77 bp overlap
ChIP K562 ENCFF901UYM 259 bp overlap
TFAP2C 1 dataset
Motif DE_12h DE_12h-TFAP2C_MA0814.3 9 bp overlap
TFAP4 2 datasets
ChIP K562 ENCFF727PXG 259 bp overlap
ChIP K562 ENCFF727PXG 224 bp overlap
TFDP1 4 datasets
Motif DE_12h DE_12h-TFDP1_MA1122.2 8 bp overlap
ChIP K-562 ENCSR017GBO.TFDP1.K-562 259 bp overlap
ChIP K562 ENCFF584VSB 259 bp overlap
ChIP K562 ENCFF794ZXJ 259 bp overlap
TFE3 1 dataset
ChIP K562 ENCFF697ABG 211 bp overlap
THRB 1 dataset
ChIP K562 ENCFF620NFN 259 bp overlap
TOE1 1 dataset
ChIP K562 ENCFF728FRA 259 bp overlap
TRIM24 3 datasets
ChIP K-562 ENCSR907MZR.TRIM24.K-562 259 bp overlap
ChIP K562 ENCFF284DKY 222 bp overlap
ChIP K562 ENCFF616RIL 135 bp overlap
TRIM25 1 dataset
ChIP BT-549 GSE79588.TRIM25.BT-549 196 bp overlap
TRIM28 1 dataset
ChIP K562 ENCFF172UPN 250 bp overlap
VEZF1 2 datasets
Motif DE_12h DE_12h-VEZF1_MA1578.2 6 bp overlap
ChIP K562 ENCFF053XDV 259 bp overlap
YY1 7 datasets
ChIP Huh-7 GSE97411.YY1.Huh-7 259 bp overlap
ChIP K-562 ENCSR000BMH.YY1.K-562 256 bp overlap
ChIP K-562 ENCSR000BKU.YY1.K-562 259 bp overlap
ChIP K-562 ENCSR000EWF.YY1.K-562 231 bp overlap
ChIP K562 ENCFF199FNC 202 bp overlap
ChIP K562 ENCFF660QRE 214 bp overlap
ChIP K562 ENCFF768DPZ 259 bp overlap
YY2 2 datasets
Motif DE_12h DE_12h-YY2_MA0748.3 7 bp overlap
Motif DE_12h DE_12h-YY2_MA0748.3 7 bp overlap
ZBTB11 1 dataset
ChIP K562 ENCFF215OUF 259 bp overlap
ZBTB40 1 dataset
ChIP K-562 ENCSR237VLT.ZBTB40.K-562 53 bp overlap
ZFP42 1 dataset
Motif DE_12h DE_12h-ZFP42_MA1651.2 13 bp overlap
ZNF135 1 dataset
Motif DE_12h DE_12h-ZNF135_MA1587.1 14 bp overlap
ZNF213 1 dataset
Motif DE_12h DE_12h-ZNF213_MA2121.1 12 bp overlap
ZNF257 1 dataset
Motif DE_12h DE_12h-ZNF257_MA1710.2 10 bp overlap
ZNF281 1 dataset
Motif DE_12h DE_12h-ZNF281_MA1630.3 10 bp overlap
ZNF384 3 datasets
Motif DE_12h DE_12h-ZNF384_MA1125.2 8 bp overlap
ChIP K-562 ENCSR000EFP.ZNF384.K-562 86 bp overlap
ChIP K562 ENCFF365NXQ 201 bp overlap
ZNF407 1 dataset
ChIP K-562 ENCSR011NOZ.ZNF407.K-562 57 bp overlap
ZNF417 1 dataset
Motif DE_12h DE_12h-ZNF417_MA1727.2 7 bp overlap
ZNF460 2 datasets
Motif DE_12h DE_12h-ZNF460_MA1596.1 16 bp overlap
Motif DE_12h DE_12h-ZNF460_MA1596.1 16 bp overlap
ZNF512 1 dataset
ChIP K562 ENCFF601EMZ 207 bp overlap
ZNF639 2 datasets
ChIP K562 ENCFF267NLX 259 bp overlap
ChIP K562 ENCFF271FQR 259 bp overlap
ZNF770 1 dataset
Motif DE_12h DE_12h-ZNF770_MA2099.1 8 bp overlap
ZNF830 1 dataset
ChIP K562 ENCFF958IPC 100 bp overlap
ZZZ3 1 dataset
ChIP K562 ENCFF845XAO 259 bp overlap
Znf423 1 dataset
Motif DE_12h DE_12h-Znf423_MA0116.1 15 bp overlap
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