Transcription factors with Perturb-seq knockdown data for ENSG00000189229. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = ENSG00000189229 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of ENSG00000189229, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr3:6,507,641–6,507,900 | at TSS | At TSS | 128 | |
| chr3:6,512,109–6,512,687 | 4.4 kb | Proximal (<10kb) | 34 | |
| chr3:6,515,635–6,516,686 | 7.9 kb | Proximal (<10kb) | 32 | |
| chr3:8,178,549–8,179,035 | 1688.3 kb | Distal (>10kb) Multiome HiCAR | 100 |
Genomic view of the ENSG00000189229 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.