Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. [provided by Alliance of Genome Resources, Jul 2025]
Transcription factors with Perturb-seq knockdown data for ZNF417. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = ZNF417 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of ZNF417, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr19:57,632,786–57,633,679 | 283.4 kb | Distal (>10kb) Multiome | 652 | |
| chr19:57,681,556–57,682,393 | 234.6 kb | Distal (>10kb) Multiome | 724 | |
| chr19:57,708,682–57,709,450 | 207.4 kb | Distal (>10kb) Multiome | 199 | |
| chr19:57,727,326–57,727,941 | 189.0 kb | Distal (>10kb) Multiome | 400 | |
| chr19:57,746,610–57,747,111 | 169.8 kb | Distal (>10kb) Multiome HiCAR | 625 | |
| chr19:57,769,422–57,770,058 | 146.9 kb | Distal (>10kb) Multiome | 509 | |
| chr19:57,803,547–57,804,316 | 112.7 kb | Distal (>10kb) Multiome | 206 | |
| chr19:57,804,773–57,805,214 | 111.5 kb | Distal (>10kb) Multiome | 37 | |
| chr19:57,810,480–57,811,177 | 105.8 kb | Distal (>10kb) Multiome | 180 | |
| chr19:57,814,439–57,815,270 | 101.6 kb | Distal (>10kb) Multiome | 692 | |
| chr19:57,819,268–57,819,991 | 97.0 kb | Distal (>10kb) Multiome | 734 | |
| chr19:57,829,187–57,830,712 | 86.3 kb | Distal (>10kb) Multiome | 321 | |
| chr19:57,849,421–57,850,221 | 66.8 kb | Distal (>10kb) Multiome | 291 | |
| chr19:57,887,264–57,887,897 | 29.0 kb | Distal (>10kb) Multiome | 47 | |
| chr19:57,888,389–57,889,457 | 27.5 kb | Distal (>10kb) Multiome | 322 | |
| chr19:57,916,199–57,917,124 | 144 bp | At TSS Multiome | 535 | |
| chr19:57,934,907–57,935,617 | 18.8 kb | Distal (>10kb) Multiome | 259 | |
| chr19:57,947,388–57,948,012 | 31.2 kb | Distal (>10kb) Multiome | 675 | |
| chr19:58,002,336–58,003,368 | 86.2 kb | Distal (>10kb) Multiome | 830 | |
| chr19:58,059,066–58,059,937 | 142.8 kb | Distal (>10kb) Multiome | 284 | |
| chr19:58,097,783–58,098,870 | 181.7 kb | Distal (>10kb) Multiome | 458 | |
| chr19:58,150,278–58,150,941 | 234.1 kb | Distal (>10kb) Multiome | 533 | |
| chr19:58,154,448–58,155,527 | 238.5 kb | Distal (>10kb) Multiome | 802 | |
| chr19:58,182,544–58,183,906 | 266.6 kb | Distal (>10kb) Multiome | 1019 |
Genomic view of the ZNF417 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.