ZNF213
zinc finger protein 213 | CR53, ZKSCAN21, ZSCAN53
Expression (TPM)
ZNF213 — as a Regulated Gene

TFs regulating ZNF213 0 TFs

Transcription factors with Perturb-seq knockdown data for ZNF213. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = ZNF213 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.

Data: Effect:
TF Mean coef Binding Outlier TF→Gene link

Elements linked to ZNF213

Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of ZNF213, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.

Accessibility Element Dist. to TSS Link type TFs
chr16:2,867,958–2,868,665 266.7 kb Distal (>10kb) Multiome 960
chr16:2,882,042–2,883,813 252.2 kb Distal (>10kb) Multiome 838
chr16:2,904,002–2,906,321 230.8 kb Distal (>10kb) Multiome 994
chr16:2,911,480–2,912,624 223.2 kb Distal (>10kb) Multiome 784
chr16:2,963,159–2,965,475 171.2 kb Distal (>10kb) Multiome 628
chr16:2,968,641–2,970,561 166.0 kb Distal (>10kb) Multiome 1039
chr16:2,979,651–2,981,140 154.6 kb Distal (>10kb) Multiome 795
chr16:2,981,390–2,982,257 153.3 kb Distal (>10kb) Multiome 460
chr16:3,003,612–3,004,589 131.1 kb Distal (>10kb) Multiome 652
chr16:3,007,583–3,008,956 126.6 kb Distal (>10kb) Multiome 514
chr16:3,009,722–3,010,376 125.1 kb Distal (>10kb) Multiome 395
chr16:3,017,242–3,018,799 116.9 kb Distal (>10kb) Multiome 451
chr16:3,019,969–3,022,268 114.9 kb Distal (>10kb) Multiome 963
chr16:3,022,890–3,024,532 110.9 kb Distal (>10kb) Multiome 933
chr16:3,027,854–3,029,038 106.8 kb Distal (>10kb) Multiome 546
chr16:3,036,222–3,037,148 98.2 kb Distal (>10kb) Multiome 256
chr16:3,045,413–3,047,408 88.9 kb Distal (>10kb) Multiome 510
chr16:3,058,226–3,060,102 75.8 kb Distal (>10kb) Multiome 769
chr16:3,098,550–3,100,475 34.9 kb Distal (>10kb) Multiome 454
chr16:3,106,146–3,106,906 28.5 kb Distal (>10kb) Multiome 851
chr16:3,123,818–3,124,940 10.8 kb Distal (>10kb) Multiome 800
chr16:3,129,612–3,129,797 5.3 kb Proximal (<10kb) 430
chr16:3,134,425–3,135,445 120 bp At TSS Multiome 752
chr16:3,149,357–3,151,137 15.5 kb Distal (>10kb) Multiome 975
chr16:3,152,009–3,153,129 17.6 kb Distal (>10kb) Multiome 889
chr16:3,156,990–3,157,742 22.2 kb Distal (>10kb) Multiome 680
chr16:3,158,260–3,159,345 23.7 kb Distal (>10kb) Multiome 764
chr16:3,171,474–3,172,591 37.0 kb Distal (>10kb) Multiome 574
chr16:3,174,125–3,174,566 39.2 kb Distal (>10kb) Multiome 371
chr16:3,175,429–3,175,953 40.6 kb Distal (>10kb) Multiome 483
chr16:3,182,514–3,183,488 47.7 kb Distal (>10kb) Multiome 690
chr16:3,187,874–3,189,822 54.4 kb Distal (>10kb) Multiome 679
chr16:3,191,282–3,192,194 56.6 kb Distal (>10kb) Multiome 509
chr16:3,234,780–3,235,610 100.1 kb Distal (>10kb) Multiome 845
chr16:3,263,988–3,264,941 129.4 kb Distal (>10kb) Multiome 923
chr16:3,282,413–3,283,892 148.0 kb Distal (>10kb) Multiome 964
chr16:3,305,073–3,306,009 170.4 kb Distal (>10kb) Multiome 681
chr16:3,400,631–3,401,665 266.0 kb Distal (>10kb) Multiome 927

Genome Browser

Genomic view of the ZNF213 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.

chr16:2,857,958 – 3,411,665
Proximal 1 kb Distal 10 kb Multiome HiCAR ATAC-seq RNA-seq