THRB
thyroid hormone receptor beta | ERBA-BETA, GRTH, NR1A2, THR1, THRB1, THRB2, THRbeta, THRbeta1, TRb, TRbeta, TRbeta1, Thrbeta2, c-erbA-2, c-erbA-beta, ERBA2, PRTH

The protein encoded by this gene is a nuclear hormone receptor for triiodothyronine. It is one of the several receptors for thyroid hormone, and has been shown to mediate the biological activities of thyroid hormone. Knockout studies in mice suggest that the different receptors, while having certain extent of redundancy, may mediate different functions of thyroid hormone. Mutations in this gene are known to be a cause of generalized thyroid hormone resistance (GTHR), a syndrome characterized by goiter and high levels of circulating thyroid hormone (T3-T4), with normal or slightly elevated thyroid stimulating hormone (TSH). Several alternatively spliced transcript variants encoding the same protein have been observed for this gene. [provided by RefSeq, Jul 2008]

Developmental clusters: GC4
Biological processes 41 terms
DNA binding (GO:0003677)DNA binding (GO:0003677)DNA-binding transcription factor activity (GO:0003700)DNA-binding transcription factor activity (GO:0003700)DNA-binding transcription factor activity, RNA polymerase II-specific (GO:0000981)DNA-binding transcription factor activity, RNA polymerase II-specific (GO:0000981)DNA-templated transcription (GO:0006351)RNA polymerase II cis-regulatory region sequence-specific DNA binding (GO:0000978)RNA polymerase II transcription regulator complex (GO:0090575)cell differentiation (GO:0030154)cellular response to thyroid hormone stimulus (GO:0097067)chromatin (GO:0000785)chromatin DNA binding (GO:0031490)chromatin binding (GO:0003682)enzyme binding (GO:0019899)mRNA transcription by RNA polymerase II (GO:0042789)mRNA transcription by RNA polymerase II (GO:0042789)negative regulation of transcription by RNA polymerase II (GO:0000122)nuclear body (GO:0016604)nuclear receptor activity (GO:0004879)nuclear receptor activity (GO:0004879)nuclear receptor activity (GO:0004879)nuclear receptor activity (GO:0004879)nucleoplasm (GO:0005654)nucleoplasm (GO:0005654)nucleus (GO:0005634)nucleus (GO:0005634)nucleus (GO:0005634)positive regulation of thyroid hormone receptor signaling pathway (GO:0002157)positive regulation of thyroid hormone receptor signaling pathway (GO:0002157)positive regulation of transcription by RNA polymerase II (GO:0045944)positive regulation of transcription by RNA polymerase II (GO:0045944)protein binding (GO:0005515)regulation of DNA-templated transcription (GO:0006355)retinoic acid receptor signaling pathway (GO:0048384)sequence-specific DNA binding (GO:0043565)sequence-specific double-stranded DNA binding (GO:1990837)thyroid hormone binding (GO:0070324)thyroid hormone receptor signaling pathway (GO:0002154)transcription coactivator binding (GO:0001223)zinc ion binding (GO:0008270)
Expression (TPM)
THRB — as a Regulated Gene

TFs regulating THRB 0 TFs

Transcription factors with Perturb-seq knockdown data for THRB. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = THRB upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.

Data: Effect:
TF Mean coef Binding Outlier TF→Gene link

Elements linked to THRB

Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of THRB, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.

Accessibility Element Dist. to TSS Link type TFs
chr3:24,493,945–24,497,054 452 bp At TSS Multiome 987
chr3:24,521,043–24,522,744 26.9 kb Distal (>10kb) Multiome 756

Genome Browser

Genomic view of the THRB locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.

chr3:24,483,945 – 24,532,744
Proximal 1 kb Distal 10 kb Multiome HiCAR ATAC-seq RNA-seq