chr5 : 55,625,096 55,625,790
694 bp 142 TFs 2 linked genes
This 694 bp open chromatin element is linked to SLC38A9 and PLPP1 and is bound by 142 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
SLC38A9 86.9 kb Distal Multiome
PLPP1 90.5 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:55,620,096 – 55,630,790
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
142 transcription factors
Source
Cell type
AR 1 dataset
ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 249 bp overlap
ARID1A 1 dataset
ChIP HAP1 GSE108387.ARID1A.HAP1 407 bp overlap
ARRB1 1 dataset
ChIP LNCaP-C4-2 GSE55615.ARRB1.LNCaP-C4-2 130 bp overlap
ASH2L 2 datasets
ChIP H1 ENCFF399KAM 296 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 433 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 262 bp overlap
Atoh1 1 dataset
Motif ES_0h ES_0h-Atoh1_MA1467.3 7 bp overlap
BACH2 1 dataset
Motif ES_0h ES_0h-BACH2_MA1470.2 19 bp overlap
BCOR 2 datasets
ChIP WA01 GSE104690.BCOR.WA01 187 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 220 bp overlap
BRD4 1 dataset
ChIP HAP1 GSE108387.BRD4.HAP1 479 bp overlap
CDK6 1 dataset
ChIP KB_IL GSE52469.CDK6.KB_IL 108 bp overlap
CDK8 1 dataset
ChIP leiomyoma_PT886 GSE128230.CDK8.leiomyoma_PT886 57 bp overlap
CDX1 1 dataset
Motif ES_0h ES_0h-CDX1_MA0878.3 10 bp overlap
CDX4 1 dataset
Motif ES_0h ES_0h-CDX4_MA1473.2 9 bp overlap
CEBPA 2 datasets
ChIP Hep-G2 ERP000209.CEBPA.Hep-G2 176 bp overlap
ChIP HepG2 ENCFF175DFS 305 bp overlap
CEBPB 14 datasets
ChIP A549 ENCFF235AIY 257 bp overlap
ChIP A549 ENCFF781RLJ 321 bp overlap
ChIP A549 ENCFF797MXZ 377 bp overlap
ChIP H1 ENCFF871PTR 72 bp overlap
ChIP HepG2 ENCFF074JWB 201 bp overlap
ChIP HepG2 ENCFF536NTI 221 bp overlap
ChIP IMR-90 ENCFF468UGY 251 bp overlap
ChIP Ishikawa ENCFF010USJ 261 bp overlap
ChIP K-562 ENCSR000EHE.CEBPB.K-562 197 bp overlap
ChIP K562 ENCFF189VBN 271 bp overlap
ChIP K562 ENCFF584CTB 525 bp overlap
ChIP MCF-7 ENCFF772ZTQ 277 bp overlap
ChIP MCF-7 ENCSR000BSR.CEBPB.MCF-7 140 bp overlap
ChIP WA01 ENCSR000EBV.CEBPB.WA01 330 bp overlap
CEBPG 3 datasets
ChIP K-562 ENCSR490LWA.CEBPG.K-562 247 bp overlap
ChIP K562 ENCFF956TPS 511 bp overlap
ChIP MCF-7 ENCFF155HZI 521 bp overlap
CHD1 1 dataset
ChIP WA01 ENCSR000AQK.CHD1.WA01 356 bp overlap
CHD7 3 datasets
ChIP H1 ENCFF126NLU 302 bp overlap
ChIP H1 ENCFF126NLU 92 bp overlap
ChIP WA01 ENCSR000AVA.CHD7.WA01 274 bp overlap
CREB1 2 datasets
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 303 bp overlap
ChIP WA01 ENCSR000BSN.CREB1.WA01 161 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 307 bp overlap
CTCF 2 datasets
Motif ES_0h ES_0h-CTCF_MA0139.2 15 bp overlap
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 186 bp overlap
Cebpa 13 datasets
ChIP BLaER1 ENCFF031ISE 416 bp overlap
ChIP BLaER1 ENCFF093OYK 610 bp overlap
ChIP BLaER1 ENCFF262VBH 362 bp overlap
ChIP BLaER1 ENCFF274GAT 395 bp overlap
ChIP BLaER1 ENCFF346MCV 253 bp overlap
ChIP BLaER1 ENCFF364PUR 453 bp overlap
ChIP BLaER1 ENCFF374ODN 457 bp overlap
ChIP BLaER1 ENCFF374ODN 392 bp overlap
ChIP BLaER1 ENCFF460KDD 333 bp overlap
ChIP BLaER1 ENCFF798NMV 360 bp overlap
ChIP BLaER1 ENCFF844FIP 251 bp overlap
ChIP BLaER1 ENCFF858JKM 457 bp overlap
ChIP BLaER1 ENCFF896HSY 575 bp overlap
DMRTA2 2 datasets
Motif ES_0h ES_0h-DMRTA2_MA1478.2 6 bp overlap
Motif ES_0h ES_0h-DMRTA2_MA1478.2 6 bp overlap
EED 1 dataset
ChIP ProEs GSE59087.EED.ProEs 202 bp overlap
ELF1 1 dataset
ChIP A-549 GSE122203.ELF1.A-549 122 bp overlap
EP300 1 dataset
ChIP tibial nerve ENCFF346AYA 158 bp overlap
ESRRA 1 dataset
Motif ES_0h ES_0h-ESRRA_MA0592.4 9 bp overlap
ESRRB 1 dataset
Motif ES_0h ES_0h-ESRRB_MA0141.4 10 bp overlap
Esrrg 1 dataset
Motif ES_0h ES_0h-Esrrg_MA0643.2 9 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 150 bp overlap
Foxl2 1 dataset
Motif ES_0h ES_0h-Foxl2_MA1607.2 10 bp overlap
Foxq1 1 dataset
Motif ES_0h ES_0h-Foxq1_MA0040.2 10 bp overlap
GATA3 1 dataset
ChIP MCF-7 ENCFF437NQS 113 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 281 bp overlap
HAND2 1 dataset
Motif ES_0h ES_0h-HAND2_MA1638.2 6 bp overlap
HDAC2 3 datasets
ChIP H1 ENCFF939VKA 237 bp overlap
ChIP WA01 ENCSR000AVB.HDAC2.WA01 240 bp overlap
ChIP WA01 ENCSR000BNR.HDAC2.WA01 138 bp overlap
HDAC3 1 dataset
ChIP RH4_DMSO-6H GSE116344.HDAC3.RH4_DMSO-6H 193 bp overlap
HNF4A 1 dataset
Motif ES_0h ES_0h-HNF4A_MA1494.2 14 bp overlap
HOXA10 1 dataset
Motif ES_0h ES_0h-HOXA10_MA0899.2 9 bp overlap
HOXB13 1 dataset
Motif ES_0h ES_0h-HOXB13_MA0901.3 9 bp overlap
HOXD9 1 dataset
Motif ES_0h ES_0h-HOXD9_MA0913.3 9 bp overlap
Hmga1 1 dataset
Motif ES_0h ES_0h-Hmga1_MA2124.1 8 bp overlap
Hoxa13 1 dataset
Motif ES_0h ES_0h-Hoxa13_MA0650.4 8 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 302 bp overlap
KLF16 1 dataset
Motif ES_0h ES_0h-KLF16_MA0741.1 11 bp overlap
KLF9 1 dataset
Motif ES_0h ES_0h-KLF9_MA1107.3 11 bp overlap
MAX 2 datasets
ChIP H1 ENCFF914VQY 325 bp overlap
ChIP WA01 ENCSR000EUP.MAX.WA01 204 bp overlap
MEF2A 1 dataset
Motif ES_0h ES_0h-MEF2A_MA0052.5 10 bp overlap
MEIS1 2 datasets
Motif ES_0h ES_0h-MEIS1_MA0498.3 5 bp overlap
Motif ES_0h ES_0h-MEIS1_MA0498.3 5 bp overlap
MEIS3 1 dataset
Motif ES_0h ES_0h-MEIS3_MA0775.2 7 bp overlap
MXI1 2 datasets
ChIP H1 ENCFF963FZS 295 bp overlap
ChIP WA01 ENCSR000EBR.MXI1.WA01 176 bp overlap
MYC 1 dataset
ChIP CD34 GSE85488.MYC.CD34 143 bp overlap
MYCN 1 dataset
ChIP RH4 GSE83726.MYCN.RH4 242 bp overlap
NANOG 5 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 424 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 95 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 305 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 198 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 123 bp overlap
NR2C1 2 datasets
Motif ES_0h ES_0h-NR2C1_MA1535.2 6 bp overlap
Motif ES_0h ES_0h-NR2C1_MA1535.2 6 bp overlap
NR2C2 2 datasets
Motif ES_0h ES_0h-NR2C2_MA1536.2 6 bp overlap
Motif ES_0h ES_0h-NR2C2_MA1536.2 6 bp overlap
NR2F1 1 dataset
Motif ES_0h ES_0h-NR2F1_MA1537.2 13 bp overlap
NR2F2 1 dataset
Motif ES_0h ES_0h-NR2F2_MA1111.2 7 bp overlap
NR4A1 1 dataset
Motif ES_0h ES_0h-NR4A1_MA1112.3 8 bp overlap
NR4A2 1 dataset
Motif ES_0h ES_0h-NR4A2_MA0160.3 8 bp overlap
Nr1H2 2 datasets
Motif ES_0h ES_0h-Nr1H2_MA1996.2 6 bp overlap
Motif ES_0h ES_0h-Nr1H2_MA1996.2 6 bp overlap
Nr1H4 2 datasets
Motif ES_0h ES_0h-Nr1H4_MA1110.3 6 bp overlap
Motif ES_0h ES_0h-Nr1H4_MA1110.3 6 bp overlap
Nr1h3 2 datasets
Motif ES_0h ES_0h-Nr1h3_MA2337.1 6 bp overlap
Motif ES_0h ES_0h-Nr1h3_MA2337.1 6 bp overlap
Nr2F6 1 dataset
Motif ES_0h ES_0h-Nr2F6_MA0728.1 15 bp overlap
Nr2f6 1 dataset
Motif ES_0h ES_0h-Nr2f6_MA0677.2 13 bp overlap
Nr5A2 1 dataset
Motif ES_0h ES_0h-Nr5A2_MA0505.3 9 bp overlap
OLIG2 1 dataset
Motif ES_0h ES_0h-OLIG2_MA0678.1 10 bp overlap
OLIG3 1 dataset
Motif ES_0h ES_0h-OLIG3_MA0827.1 10 bp overlap
OSR2 1 dataset
Motif ES_0h ES_0h-OSR2_MA1646.2 8 bp overlap
PBX1 1 dataset
Motif ES_0h ES_0h-PBX1_MA0070.2 9 bp overlap
PHF19 1 dataset
ChIP DU145_SH4 GSE135623.PHF19.DU145_SH4 251 bp overlap
POLR2A 2 datasets
ChIP H1 ENCFF566JSR 421 bp overlap
ChIP prostate gland ENCFF881OMH 417 bp overlap
POU1F1 1 dataset
Motif ES_0h ES_0h-POU1F1_MA0784.3 14 bp overlap
POU2F1 1 dataset
Motif ES_0h ES_0h-POU2F1_MA0785.2 9 bp overlap
POU2F2 1 dataset
Motif ES_0h ES_0h-POU2F2_MA0507.3 13 bp overlap
POU2F3 1 dataset
Motif ES_0h ES_0h-POU2F3_MA0627.3 9 bp overlap
POU3F1 2 datasets
Motif ES_0h ES_0h-POU3F1_MA0786.2 10 bp overlap
Motif ES_0h ES_0h-POU3F1_MA0786.2 10 bp overlap
POU3F2 2 datasets
Motif ES_0h ES_0h-POU3F2_MA0787.1 12 bp overlap
Motif ES_0h ES_0h-POU3F2_MA0787.1 12 bp overlap
POU3F3 2 datasets
Motif ES_0h ES_0h-POU3F3_MA0788.1 13 bp overlap
Motif ES_0h ES_0h-POU3F3_MA0788.1 13 bp overlap
POU3F4 1 dataset
Motif ES_0h ES_0h-POU3F4_MA0789.1 9 bp overlap
POU5F1 5 datasets
ChIP GM23338 ENCFF333SNB 311 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 373 bp overlap
ChIP NCCIT GSE36134.POU5F1.NCCIT 442 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 496 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 166 bp overlap
Pou5f1::Sox2 3 datasets
Motif ES_0h ES_0h-Pou5f1Sox2_MA0142.1 15 bp overlap
Motif ES_0h ES_0h-Pou5f1Sox2_MA0142.1 15 bp overlap
Motif ES_0h ES_0h-Pou5f1Sox2_MA0142.1 15 bp overlap
Ppara 1 dataset
Motif ES_0h ES_0h-Ppara_MA2338.1 7 bp overlap
Prdm5 1 dataset
Motif ES_0h ES_0h-Prdm5_MA1999.2 11 bp overlap
RAD21 6 datasets
ChIP H1 ENCFF698EWO 209 bp overlap
ChIP HAP1 GSE126634.RAD21.HAP1 341 bp overlap
ChIP HAP1 GSE152721.RAD21.HAP1 317 bp overlap
ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 430 bp overlap
ChIP HAP1_clone25 GSE152721.RAD21.HAP1_clone25 199 bp overlap
ChIP hiPSC_IV8 GSE106870.RAD21.hiPSC_IV8 153 bp overlap
RBBP5 2 datasets
ChIP H1 ENCFF905HFL 493 bp overlap
ChIP WA01 ENCSR000AQC.RBBP5.WA01 331 bp overlap
RBM39 1 dataset
ChIP K-562 GSE120104.RBM39.K-562 172 bp overlap
RFX5 1 dataset
Motif ES_0h ES_0h-RFX5_MA0510.3 14 bp overlap
Rarg 1 dataset
Motif ES_0h ES_0h-Rarg_MA0860.1 17 bp overlap
SAP30 1 dataset
ChIP WA01 ENCSR000ATR.SAP30.WA01 385 bp overlap
SATB1 1 dataset
Motif ES_0h ES_0h-SATB1_MA1963.2 7 bp overlap
SIN3A 3 datasets
ChIP H1 ENCFF042ZSL 383 bp overlap
ChIP WA01 ENCSR000EBO.SIN3A.WA01 173 bp overlap
ChIP hiPSC_IID12 GSE106870.SIN3A.hiPSC_IID12 210 bp overlap
SMAD3 2 datasets
ChIP BG03 GSE36578.SMAD3.BG03 99 bp overlap
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 158 bp overlap
SMARCA4 3 datasets
ChIP NPC_K755R-siAP GSE122631.SMARCA4.NPC_K755R-siAP 87 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 308 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 321 bp overlap
SMARCB1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 261 bp overlap
SMARCC1 3 datasets
ChIP TTC-549_NoDox GSE71504.SMARCC1.TTC-549_NoDox 100 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 235 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 325 bp overlap
SNAI2 1 dataset
ChIP SMS-CTR_D48 GSE137168.SNAI2.SMS-CTR_D48 185 bp overlap
SOX10 1 dataset
Motif ES_0h ES_0h-SOX10_MA0442.3 6 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 180 bp overlap
SP4 2 datasets
ChIP H1 ENCFF473YOB 430 bp overlap
ChIP WA01 ENCSR000BQV.SP4.WA01 191 bp overlap
SP8 1 dataset
Motif ES_0h ES_0h-SP8_MA0747.2 11 bp overlap
SRF 1 dataset
Motif ES_0h ES_0h-SRF_MA0083.3 16 bp overlap
Sox17 1 dataset
Motif ES_0h ES_0h-Sox17_MA0078.3 10 bp overlap
TBP 3 datasets
ChIP H1 ENCFF859IIO 294 bp overlap
ChIP WA01 ENCSR000ECB.TBP.WA01 132 bp overlap
ChIP hESC_10h GSE122298.TBP.hESC_10h 118 bp overlap
TEAD1 1 dataset
ChIP WTC11 ENCFF502QUV 405 bp overlap
TEAD4 2 datasets
ChIP H1 ENCFF778PAX 245 bp overlap
ChIP hMSC-TERT4 GSE140782.TEAD4.hMSC-TERT4 205 bp overlap
TFAP2C 1 dataset
Motif ES_0h ES_0h-TFAP2C_MA0814.3 9 bp overlap
THRA 1 dataset
Motif ES_0h ES_0h-THRA_MA1969.2 18 bp overlap
TP53 2 datasets
ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 338 bp overlap
ChIP hESC_DIFF GSE39912.TP53.hESC_DIFF 370 bp overlap
Wt1 1 dataset
Motif ES_0h ES_0h-Wt1_MA1627.2 10 bp overlap
YY1 6 datasets
ChIP H1 ENCFF524BTL 161 bp overlap
ChIP H1 ENCFF524BTL 284 bp overlap
ChIP NT2/D1 ENCFF999MII 226 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 146 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 267 bp overlap
ChIP liver ENCFF400MBC 494 bp overlap
Yy1 2 datasets
Motif ES_0h ES_0h-Yy1_MA0095.4 8 bp overlap
Motif ES_0h ES_0h-Yy1_MA0095.4 8 bp overlap
ZFP42 1 dataset
Motif ES_0h ES_0h-ZFP42_MA1651.2 13 bp overlap
ZNF136 1 dataset
Motif ES_0h ES_0h-ZNF136_MA1588.1 15 bp overlap
ZNF207 1 dataset
ChIP WA09 GSE118632.ZNF207.WA09 230 bp overlap
ZNF24 1 dataset
Motif ES_0h ES_0h-ZNF24_MA1124.1 13 bp overlap
ZNF274 1 dataset
Motif ES_0h ES_0h-ZNF274_MA1592.2 12 bp overlap
ZNF282 1 dataset
Motif ES_0h ES_0h-ZNF282_MA1154.2 15 bp overlap
ZNF423 1 dataset
ChIP WTC11 ENCFF574PBR 317 bp overlap
ZNF449 1 dataset
Motif ES_0h ES_0h-ZNF449_MA1656.2 10 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 222 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 398 bp overlap
ZNF479 1 dataset
ChIP HEK293T GSE78099.ZNF479.HEK293T 119 bp overlap
ZNF549 2 datasets
Motif ES_0h ES_0h-ZNF549_MA1728.2 8 bp overlap
ChIP HEK293 GSE76494.ZNF549.HEK293 119 bp overlap
ZNF684 1 dataset
Motif ES_0h ES_0h-ZNF684_MA1600.2 14 bp overlap
ZNF766 2 datasets
Motif ES_0h ES_0h-ZNF766_MA2098.1 9 bp overlap
Motif ES_0h ES_0h-ZNF766_MA2098.1 9 bp overlap
Zfp335 1 dataset
Motif ES_0h ES_0h-Zfp335_MA2002.2 7 bp overlap
Zfx 1 dataset
Motif ES_0h ES_0h-Zfx_MA0146.3 10 bp overlap