chr1 : 45,522,743 45,523,047
304 bp 134 TFs 1 linked gene
This 304 bp open chromatin element is linked to PRDX1 and is bound by 134 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
PRDX1 859 bp At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:45,517,743 – 45,528,047
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
134 transcription factors
Source
Cell type
AFF4 1 dataset
ChIP HeLa GSE40632.AFF4.HeLa 124 bp overlap
ARID1A 1 dataset
ChIP RMG-I GSE104545.ARID1A.RMG-I 101 bp overlap
ARID2 2 datasets
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.ARID2.BIN-67_lentivirus-SMARCA4-K785R 181 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.ARID2.BIN-67_lentivirus-SMARCA4-T910M 131 bp overlap
ARID5B 2 datasets
ChIP HepG2 ENCFF964FWK 304 bp overlap
ChIP HepG2 ENCFF964FWK 73 bp overlap
ARNT 1 dataset
ChIP A-549 GSE85352.ARNT.A-549 227 bp overlap
ATF4 5 datasets
ChIP HepG2 ENCFF903ADR 304 bp overlap
ChIP HepG2 ENCFF903ADR 157 bp overlap
ChIP K-562 ENCSR145TSJ.ATF4.K-562 304 bp overlap
ChIP K562 ENCFF674KTF 282 bp overlap
ChIP K562 ENCFF674KTF 282 bp overlap
ATF7 1 dataset
ChIP K562 ENCFF308SKS 304 bp overlap
BCL3 1 dataset
ChIP A549 ENCFF214WKT 304 bp overlap
BCL6 1 dataset
ChIP HepG2 ENCFF423EJH 304 bp overlap
BCOR 1 dataset
ChIP K-562 ENCSR808AKZ.BCOR.K-562 74 bp overlap
BHLHE40 1 dataset
ChIP HeLa-S3_biotin GSE137848.BHLHE40.HeLa-S3_biotin 237 bp overlap
BRD2 2 datasets
ChIP HCC1806_BAZ2BsiRNA GSE116879.BRD2.HCC1806_BAZ2BsiRNA 104 bp overlap
ChIP HCC1806_NTsiRNA GSE116879.BRD2.HCC1806_NTsiRNA 114 bp overlap
BRD4 7 datasets
ChIP CLL_patient4 GSE109411.BRD4.CLL_patient4 207 bp overlap
ChIP PC-3_GDC-R GSE137207.BRD4.PC-3_GDC-R 304 bp overlap
ChIP SK-N-BE2-C_Resistant-veh GSE107706.BRD4.SK-N-BE2-C_Resistant-veh 68 bp overlap
ChIP SUM229PE_neg_30nMtrametinib_24h GSE87418.BRD4.SUM229PE_neg_30nMtrametinib_24h 61 bp overlap
ChIP SUM229PE_pos_DMSO_24h GSE87418.BRD4.SUM229PE_pos_DMSO_24h 135 bp overlap
ChIP SW480 GSE110473.BRD4.SW480 298 bp overlap
ChIP SW480_16h_TNF-a GSE110473.BRD4.SW480_16h_TNF-a 180 bp overlap
CDKN1B 1 dataset
ChIP MDA-MB-231_p27CK-DD GSE112444.CDKN1B.MDA-MB-231_p27CK-DD 304 bp overlap
CEBPB 1 dataset
ChIP HeLa-S3 ENCFF722WEG 265 bp overlap
CEBPG 1 dataset
ChIP HepG2 ENCFF503XBC 270 bp overlap
CTBP1 2 datasets
ChIP K-562 ENCSR201NQZ.CTBP1.K-562 244 bp overlap
ChIP K562 ENCFF403WPG 304 bp overlap
CTCF 1 dataset
ChIP HeLa-S3_biotin GSE108869.CTCF.HeLa-S3_biotin 203 bp overlap
CXXC5 2 datasets
ChIP K562 ENCFF497CZN 304 bp overlap
ChIP K562 ENCFF497CZN 211 bp overlap
DEK 1 dataset
ChIP HeLa-S3 ENCFF948XBE 125 bp overlap
DMAP1 1 dataset
ChIP Hep-G2 ENCSR670YPQ.DMAP1.Hep-G2 145 bp overlap
E2F6 1 dataset
ChIP K562 ENCFF136LTS 282 bp overlap
E4F1 1 dataset
ChIP K-562 ENCSR731LHZ.E4F1.K-562 51 bp overlap
EP300 1 dataset
ChIP K562 ENCFF226VMS 255 bp overlap
EP400 1 dataset
ChIP K562 ENCFF850OZQ 268 bp overlap
FOXK1 1 dataset
ChIP K562 ENCFF801IBC 254 bp overlap
FUBP3 1 dataset
ChIP HepG2 ENCFF281RQN 215 bp overlap
GABPB1 1 dataset
ChIP WTC11 ENCFF166QKI 304 bp overlap
GATA1 1 dataset
ChIP K562 ENCFF094CMK 100 bp overlap
GATAD2A 1 dataset
ChIP K562 ENCFF071LJW 85 bp overlap
GLIS1 1 dataset
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 118 bp overlap
GLIS2 1 dataset
ChIP HCT-116_5FU GSE125927.GLIS2.HCT-116_5FU 186 bp overlap
GZF1 1 dataset
ChIP HepG2 ENCFF060TLH 304 bp overlap
HDGF 4 datasets
ChIP K-562 ENCSR197ALX.HDGF.K-562 111 bp overlap
ChIP K-562 ENCSR563YDA.HDGF.K-562 304 bp overlap
ChIP K-562 ENCSR197ALX.HDGF.K-562 83 bp overlap
ChIP K562 ENCFF682FBH 73 bp overlap
HIF1A 1 dataset
ChIP RCC10 GSE101063.HIF1A.RCC10 104 bp overlap
HMGA2 1 dataset
ChIP A549 ENCFF624CAQ 96 bp overlap
HNF4A 1 dataset
ChIP liver ENCFF354NRH 304 bp overlap
HOXB8 1 dataset
ChIP CFPAC-1_HOXB8-OE GSE119930.HOXB8.CFPAC-1_HOXB8-OE 56 bp overlap
IKZF1 3 datasets
ChIP K-562 ENCSR395HWC.IKZF1.K-562 304 bp overlap
ChIP K562 ENCFF771OHZ 133 bp overlap
ChIP K562 ENCFF771OHZ 54 bp overlap
INTS11 1 dataset
ChIP HeLa GSE125534.INTS11.HeLa 122 bp overlap
JUN 2 datasets
ChIP A549 ENCFF191QZG 304 bp overlap
ChIP MDA-BoM-1833 GSE112444.JUN.MDA-BoM-1833 277 bp overlap
JUND 1 dataset
ChIP HCT116 ENCFF748ZQX 130 bp overlap
KAT7 1 dataset
ChIP K562 ENCFF175ZTN 111 bp overlap
KLF1 2 datasets
ChIP HEK293 ENCFF159QSW 114 bp overlap
ChIP HEK293 ENCSR859BMR.KLF1.HEK293 292 bp overlap
KLF13 1 dataset
ChIP K562 ENCFF738YZC 224 bp overlap
KLF6 1 dataset
ChIP Hep-G2 ENCSR757EKM.KLF6.Hep-G2 111 bp overlap
KMT2A 1 dataset
ChIP HEK293T_N-term_C49 GSE90762.KMT2A.HEK293T_N-term_C49 84 bp overlap
LEF1 1 dataset
ChIP K562 ENCFF198WCP 279 bp overlap
LIN54 1 dataset
ChIP Hep-G2 ENCSR597MCV.LIN54.Hep-G2 180 bp overlap
MAX 8 datasets
ChIP A-549 ENCSR000BTJ.MAX.A-549 52 bp overlap
ChIP A549 ENCFF310XGQ 304 bp overlap
ChIP HeLa-S3 ENCSR000ECN.MAX.HeLa-S3 114 bp overlap
ChIP Hep-G2 ENCSR168DYA.MAX.Hep-G2 143 bp overlap
ChIP HepG2 ENCFF507HCX 304 bp overlap
ChIP K562 ENCFF110LJS 304 bp overlap
ChIP K562 ENCFF398VJM 304 bp overlap
ChIP K562 ENCFF524IJO 300 bp overlap
MAZ 1 dataset
ChIP K562 ENCFF333ZIV 267 bp overlap
MED1 1 dataset
ChIP Hep-G2 ENCSR959XNY.MED1.Hep-G2 70 bp overlap
MEF2D 1 dataset
ChIP K562 ENCFF392LDT 304 bp overlap
MGA 2 datasets
ChIP HepG2 ENCFF057YJE 171 bp overlap
ChIP K562 ENCFF140CEX 304 bp overlap
MIER1 1 dataset
ChIP K562 ENCFF584AYC 65 bp overlap
MITF 1 dataset
ChIP K562 ENCFF731XJJ 304 bp overlap
MLLT1 2 datasets
ChIP K-562 ENCSR675LRO.MLLT1.K-562 67 bp overlap
ChIP K-562 ENCSR107GRP.MLLT1.K-562 304 bp overlap
MNT 1 dataset
ChIP K-562 ENCSR512NLO.MNT.K-562 147 bp overlap
NELFA 4 datasets
ChIP HeLa_1h-Flavo-0-H2O2 GSE93931.NELFA.HeLa_1h-Flavo-0-H2O2 304 bp overlap
ChIP HeLa_40min-Flavo-0-H2O2 GSE93931.NELFA.HeLa_40min-Flavo-0-H2O2 233 bp overlap
ChIP HeLa_40min-Flavo-PJ34-0-H2O2 GSE93931.NELFA.HeLa_40min-Flavo-PJ34-0-H2O2 163 bp overlap
ChIP HeLa_Flavo-PJ34-0-H2O2 GSE100742.NELFA.HeLa_Flavo-PJ34-0-H2O2 163 bp overlap
NELFE 3 datasets
ChIP HeLa GSE125534.NELFE.HeLa 152 bp overlap
ChIP HeLa_DOX GSE125534.NELFE.HeLa_DOX 136 bp overlap
ChIP K-562_NHS GSE112379.NELFE.K-562_NHS 152 bp overlap
NFE2L2 2 datasets
ChIP HeLa-S3 ENCFF449JDM 209 bp overlap
ChIP HeLa-S3 ENCFF449JDM 180 bp overlap
NFRKB 1 dataset
ChIP K562 ENCFF057YFW 181 bp overlap
NIPBL 1 dataset
ChIP HCT-116_RAD21-mAC GSE104888.NIPBL.HCT-116_RAD21-mAC 152 bp overlap
NKRF 1 dataset
ChIP K562 ENCFF815TQL 304 bp overlap
NR2C1 1 dataset
ChIP K562 ENCFF239KMA 204 bp overlap
NR2E3 1 dataset
ChIP A549 ENCFF833WDR 205 bp overlap
NR2F1 3 datasets
ChIP HepG2 ENCFF518ZRY 224 bp overlap
ChIP K-562 ENCSR970NKQ.NR2F1.K-562 88 bp overlap
ChIP K562 ENCFF221HJH 168 bp overlap
PHF21A 1 dataset
ChIP HepG2 ENCFF525EUW 94 bp overlap
PHF8 1 dataset
ChIP Hep-G2 ENCSR604VAE.PHF8.Hep-G2 128 bp overlap
PHIP 1 dataset
ChIP HCT-116_ab833 GSE101646.PHIP.HCT-116_ab833 60 bp overlap
POLR2A 8 datasets
ChIP HCT116 ENCFF508RDJ 206 bp overlap
ChIP HeLa-S3 ENCFF224LWS 300 bp overlap
ChIP HeLa-S3 ENCFF455YYQ 142 bp overlap
ChIP HeLa-S3 ENCFF773DNG 285 bp overlap
ChIP HepG2 ENCFF350RIU 214 bp overlap
ChIP esophagus squamous epithelium ENCFF297FPP 304 bp overlap
ChIP esophagus squamous epithelium ENCFF708IOX 304 bp overlap
ChIP right lobe of liver ENCFF026NCK 211 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 196 bp overlap
PRPF4 4 datasets
ChIP Hep-G2 GSE120104.PRPF4.Hep-G2 295 bp overlap
ChIP Hep-G2 ENCSR243LNQ.PRPF4.Hep-G2 230 bp overlap
ChIP HepG2 ENCFF645WCL 263 bp overlap
ChIP HepG2 ENCFF645WCL 183 bp overlap
RXRA 1 dataset
ChIP HepG2 ENCFF763IEA 300 bp overlap
SKI 1 dataset
ChIP HepG2 ENCFF631IPX 301 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 137 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 164 bp overlap
SMAD2_3 2 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 175 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 249 bp overlap
SMAD3 2 datasets
ChIP HCC1954_TGFb GSE104760.SMAD3.HCC1954_TGFb 149 bp overlap
ChIP Hep-G2 ENCSR005GZH.SMAD3.Hep-G2 70 bp overlap
SMARCB1 1 dataset
ChIP Hep-G2 GSE69566.SMARCB1.Hep-G2 282 bp overlap
SMARCC1 1 dataset
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4-T910M 91 bp overlap
SMARCE1 1 dataset
ChIP K562 ENCFF690CFF 231 bp overlap
SNAI2 1 dataset
ChIP PC-9_2DF GSE131687.SNAI2.PC-9_2DF 104 bp overlap
SP1 1 dataset
ChIP A-549 ENCSR000BPE.SP1.A-549 81 bp overlap
SP2 1 dataset
ChIP HEK293 ENCFF181QXT 304 bp overlap
SP7 1 dataset
ChIP HEK293 ENCSR468IJT.SP7.HEK293 164 bp overlap
SREBF1 2 datasets
ChIP A549 ENCFF955FQW 243 bp overlap
ChIP TE-5 GSE143803.SREBF1.TE-5 250 bp overlap
SUPT5H 4 datasets
ChIP HCT-116_DMSO GSE138548.SUPT5H.HCT-116_DMSO 162 bp overlap
ChIP HCT-116_DMSO_pThr806 GSE138548.SUPT5H.HCT-116_DMSO_pThr806 170 bp overlap
ChIP HCT-116_pThr806 GSE138548.SUPT5H.HCT-116_pThr806 143 bp overlap
ChIP HeLa_Flavo-PJ34-0-H2O2 GSE100742.SUPT5H.HeLa_Flavo-PJ34-0-H2O2 184 bp overlap
TAF1 6 datasets
ChIP H1 ENCFF478SZO 304 bp overlap
ChIP H1 ENCFF478SZO 233 bp overlap
ChIP HeLa-S3 ENCFF556LCN 212 bp overlap
ChIP HeLa-S3 ENCSR000BHT.TAF1.HeLa-S3 153 bp overlap
ChIP Hep-G2 ENCSR918OKK.TAF1.Hep-G2 144 bp overlap
ChIP WA01 ENCSR000BHO.TAF1.WA01 139 bp overlap
TBP 4 datasets
ChIP HeLa-S3 ENCFF715NNJ 279 bp overlap
ChIP HeLa-S3 ENCFF715NNJ 206 bp overlap
ChIP HeLa-S3 ENCSR000EDD.TBP.HeLa-S3 304 bp overlap
ChIP hESC_8h GSE122298.TBP.hESC_8h 80 bp overlap
TCF12 1 dataset
ChIP A-549 ENCSR000BQQ.TCF12.A-549 125 bp overlap
TFDP2 1 dataset
ChIP Hep-G2 ENCSR069JKP.TFDP2.Hep-G2 127 bp overlap
THRA 1 dataset
ChIP HepG2 ENCFF025KMX 303 bp overlap
THRB 3 datasets
ChIP Hep-G2 ENCSR430JGJ.THRB.Hep-G2 96 bp overlap
ChIP Hep-G2 ENCSR430JGJ.THRB.Hep-G2 101 bp overlap
ChIP HepG2 ENCFF476INC 279 bp overlap
TRIM28 1 dataset
ChIP HEK293 ENCFF265CEM 141 bp overlap
Thap11 1 dataset
Motif ES_0h ES_0h-Thap11_MA1573.2 14 bp overlap
UBN1 1 dataset
ChIP HeLa GSE45024.UBN1.HeLa 112 bp overlap
UBTF 2 datasets
ChIP K562 ENCFF174SPM 303 bp overlap
ChIP K562 ENCFF174SPM 151 bp overlap
USF2 1 dataset
ChIP K562 ENCFF306QPU 269 bp overlap
VDR 1 dataset
ChIP kidney-cortex GSE129585.VDR.kidney-cortex 142 bp overlap
YY1 1 dataset
ChIP Hep-G2_NC GSE120104.YY1.Hep-G2_NC 304 bp overlap
ZBTB33 4 datasets
ChIP HepG2 ENCFF778UKV 146 bp overlap
ChIP K-562 ENCSR876GXA.ZBTB33.K-562 274 bp overlap
ChIP K562 ENCFF427SDV 295 bp overlap
ChIP K562 ENCFF875HLX 222 bp overlap
ZBTB38 1 dataset
ChIP HepG2 ENCFF875UQX 105 bp overlap
ZBTB4 1 dataset
ChIP HepG2 ENCFF828GZH 304 bp overlap
ZBTB40 1 dataset
ChIP K562 ENCFF521DSV 63 bp overlap
ZBTB6 1 dataset
ChIP HEK293 ENCFF881ECZ 304 bp overlap
ZC3H4 1 dataset
ChIP HepG2 ENCFF603QUY 217 bp overlap
ZC3H8 1 dataset
ChIP K562 ENCFF462ENR 69 bp overlap
ZEB2 2 datasets
ChIP K562 ENCFF795CMH 264 bp overlap
ChIP K562 ENCFF975RXS 295 bp overlap
ZFP64 1 dataset
ChIP Hep-G2 ENCSR487CPI.ZFP64.Hep-G2 104 bp overlap
ZHX1 1 dataset
ChIP HeLa-S3 ENCSR855WKQ.ZHX1.HeLa-S3 78 bp overlap
ZNF135 1 dataset
Motif ES_0h ES_0h-ZNF135_MA1587.1 14 bp overlap
ZNF197 2 datasets
ChIP K562 ENCFF872BAU 259 bp overlap
ChIP K562 ENCFF872BAU 304 bp overlap
ZNF316 1 dataset
ChIP K562 ENCFF281INV 142 bp overlap
ZNF395 2 datasets
ChIP K562 ENCFF464EIT 304 bp overlap
ChIP K562 ENCFF464EIT 278 bp overlap
ZNF460 1 dataset
Motif ES_0h ES_0h-ZNF460_MA1596.1 16 bp overlap
ZNF584 1 dataset
ChIP K562 ENCFF771INO 304 bp overlap
ZNF600 1 dataset
ChIP HEK293 ENCFF785JSX 207 bp overlap
ZNF761 1 dataset
ChIP HepG2 ENCFF761IOF 182 bp overlap
ZNF770 2 datasets
ChIP Hep-G2 ENCSR510GKB.ZNF770.Hep-G2 302 bp overlap
ChIP HepG2 ENCFF233UVH 304 bp overlap
ZNF83 2 datasets
ChIP K562 ENCFF340RTV 100 bp overlap
ChIP K562 ENCFF340RTV 304 bp overlap
ZSCAN25 1 dataset
ChIP HepG2 ENCFF265FLD 105 bp overlap