chr3 : 24,684,365 24,685,112
747 bp 146 TFs 0 linked genes
This 747 bp open chromatin element has no linked target genes and is bound by 146 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:24,679,365 – 24,690,112
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
146 transcription factors
Source
Cell type
ASH2L 2 datasets
ChIP H1 ENCFF399KAM 285 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 728 bp overlap
ATF2 2 datasets
ChIP H1 ENCFF295GZO 571 bp overlap
ChIP WA01 ENCSR000BQU.ATF2.WA01 452 bp overlap
ATF3 1 dataset
ChIP K562 ENCFF921JQW 158 bp overlap
Arid3a 1 dataset
Motif DE_12h DE_12h-Arid3a_MA0151.1 6 bp overlap
BRD4 4 datasets
ChIP HEK293_sgNT GSE129407.BRD4.HEK293_sgNT 224 bp overlap
ChIP MDA-MB-231_JQ1-neg_L GSE136151.BRD4.MDA-MB-231_JQ1-neg_L 151 bp overlap
ChIP MDA-MB-231_JQ1-neg_S_3f GSE136151.BRD4.MDA-MB-231_JQ1-neg_S_3f 329 bp overlap
ChIP hESC GSE33281.BRD4.hESC 61 bp overlap
CBX2 1 dataset
ChIP K-562 ENCSR000ATU.CBX2.K-562 524 bp overlap
CREB1 2 datasets
ChIP GM23338 ENCFF432ZEW 305 bp overlap
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 237 bp overlap
CRY1 1 dataset
ChIP U2OS_cordycepin GSE130506.CRY1.U2OS_cordycepin 412 bp overlap
CTCF 20 datasets
ChIP A-673 ENCSR611JJS.CTCF.A-673 87 bp overlap
ChIP C4-2B ENCFF821XVN 96 bp overlap
ChIP CD14-positive monocyte ENCFF087XLR 160 bp overlap
ChIP PC-3 ENCSR359LOD.CTCF.PC-3 147 bp overlap
ChIP PC-9 ENCFF539ULB 74 bp overlap
ChIP RWPE2 ENCFF911IEE 53 bp overlap
ChIP SLK_RAD21-KD GSE138105.CTCF.SLK_RAD21-KD 53 bp overlap
ChIP THP-1_Pam3csk-360m-Flavo-240m GSE103477.CTCF.THP-1_Pam3csk-360m-Flavo-240m 99 bp overlap
ChIP chondrocyte ENCFF134ORZ 77 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF338KEP 57 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF696JOF 87 bp overlap
ChIP heart left ventricle ENCFF832OXT 56 bp overlap
ChIP heart right ventricle ENCFF725NNJ 57 bp overlap
ChIP heart right ventricle ENCFF979TCT 59 bp overlap
ChIP keratinocyte GSE154221.CTCF.keratinocyte 392 bp overlap
ChIP primary-glioblastoma_G583 GSE121601.CTCF.primary-glioblastoma_G583 96 bp overlap
ChIP smooth-muscle-cell ENCSR261VAS.CTCF.smooth-muscle-cell 132 bp overlap
ChIP spleen ENCFF326DUY 88 bp overlap
ChIP spleen ENCFF520HPZ 80 bp overlap
ChIP stomach ENCFF918GTC 69 bp overlap
DMRTA2 3 datasets
Motif DE_12h DE_12h-DMRTA2_MA1478.2 6 bp overlap
Motif DE_24h DE_24h-DMRTA2_MA1478.2 6 bp overlap
Motif ES_0h ES_0h-DMRTA2_MA1478.2 6 bp overlap
DPRX 1 dataset
Motif DE_12h DE_12h-DPRX_MA1480.2 9 bp overlap
E2F7 1 dataset
Motif DE_12h DE_12h-E2F7_MA0758.1 14 bp overlap
ERG 1 dataset
ChIP aortic-endothelial-cell_D51 GSE139377.ERG.aortic-endothelial-cell_D51 166 bp overlap
ESR1 1 dataset
ChIP Ishikawa ENCSR000BQR.ESR1.Ishikawa 117 bp overlap
ESR2 1 dataset
Motif DE_12h DE_12h-ESR2_MA0258.2 15 bp overlap
ESRRA 2 datasets
Motif DE_12h DE_12h-ESRRA_MA0592.4 9 bp overlap
Motif DE_12h DE_12h-ESRRA_MA0592.4 9 bp overlap
ESRRB 1 dataset
Motif DE_12h DE_12h-ESRRB_MA0141.4 10 bp overlap
EZH2 1 dataset
ChIP DND41 ENCSR000ASW.EZH2.DND41 239 bp overlap
Esrrg 1 dataset
Motif DE_12h DE_12h-Esrrg_MA0643.2 9 bp overlap
FEZF1 1 dataset
ChIP HEK293 ENCSR827NWO.FEZF1.HEK293 211 bp overlap
FIGLA 1 dataset
Motif DE_12h DE_12h-FIGLA_MA0820.2 6 bp overlap
FOXA1 1 dataset
ChIP VCaP_DHT24H GSE58428.FOXA1.VCaP_DHT24H 70 bp overlap
GLI2 1 dataset
ChIP HEK293 ENCFF700EUN 256 bp overlap
GLIS1 3 datasets
ChIP HEK293 ENCFF299RSE 457 bp overlap
ChIP HEK293 ENCFF299RSE 407 bp overlap
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 258 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 229 bp overlap
HIC1 2 datasets
ChIP HEK293 ENCFF252CFL 441 bp overlap
ChIP HEK293 ENCSR803GYT.HIC1.HEK293 258 bp overlap
HIF1A 1 dataset
ChIP macrophage_HYPO GSE43109.HIF1A.macrophage_HYPO 78 bp overlap
IKZF3 2 datasets
ChIP HEK293 ENCFF518OXG 181 bp overlap
ChIP HEK293 ENCSR304AMN.IKZF3.HEK293 256 bp overlap
IRF2 1 dataset
Motif DE_12h DE_12h-IRF2_MA0051.2 16 bp overlap
IRF3 1 dataset
Motif DE_12h DE_12h-IRF3_MA1418.2 17 bp overlap
IRF4 1 dataset
Motif DE_12h DE_12h-IRF4_MA1419.2 14 bp overlap
IRF7 2 datasets
Motif DE_12h DE_12h-IRF7_MA0772.2 13 bp overlap
Motif DE_12h DE_12h-IRF7_MA0772.2 13 bp overlap
IRF8 1 dataset
Motif DE_12h DE_12h-IRF8_MA0652.2 13 bp overlap
IRF9 1 dataset
Motif DE_12h DE_12h-IRF9_MA0653.1 15 bp overlap
Irf1 2 datasets
Motif DE_12h DE_12h-Irf1_MA0050.4 11 bp overlap
Motif DE_12h DE_12h-Irf1_MA0050.4 11 bp overlap
JUN 9 datasets
Motif DE_12h DE_12h-JUN_MA0488.2 10 bp overlap
ChIP DE_D1 S08-DE-d1-JUN-exp1 517 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 536 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 628 bp overlap
ChIP DE_D2 S54-DE-d2-JUN-exp2 322 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 502 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 535 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 574 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 580 bp overlap
JUND 4 datasets
Motif DE_12h DE_12h-JUND_MA0492.2 11 bp overlap
ChIP H1 ENCFF010YXS 311 bp overlap
ChIP WA01 ENCSR000EBZ.JUND.WA01 244 bp overlap
ChIP WA01 ENCSR000BKP.JUND.WA01 155 bp overlap
KDM1A 1 dataset
ChIP H1 ENCFF696SGD 505 bp overlap
KLF1 2 datasets
ChIP HEK293 ENCFF159QSW 167 bp overlap
ChIP HEK293 ENCSR859BMR.KLF1.HEK293 571 bp overlap
KLF4 1 dataset
ChIP BJ_INDUCED GSE36570.KLF4.BJ_INDUCED 255 bp overlap
KLF5 1 dataset
ChIP HEK293_E419Q GSE88976.KLF5.HEK293_E419Q 168 bp overlap
KLF8 1 dataset
ChIP HEK293 ENCSR635NOQ.KLF8.HEK293 355 bp overlap
MAX 1 dataset
ChIP H1 ENCFF914VQY 357 bp overlap
MAZ 2 datasets
ChIP HEK293 GSE76494.MAZ.HEK293 178 bp overlap
ChIP HEK293 ENCSR290SSQ.MAZ.HEK293 317 bp overlap
MED1 1 dataset
ChIP RH4 GSE83726.MED1.RH4 274 bp overlap
MYB 3 datasets
Motif DE_12h DE_12h-MYB_MA0100.4 6 bp overlap
Motif DE_24h DE_24h-MYB_MA0100.4 6 bp overlap
Motif ES_0h ES_0h-MYB_MA0100.4 6 bp overlap
MYCN 1 dataset
ChIP RH4 GSE83726.MYCN.RH4 269 bp overlap
MYOD1 1 dataset
Motif DE_12h DE_12h-MYOD1_MA0499.3 9 bp overlap
MZF1 2 datasets
ChIP HEK293 ENCFF683ZWN 176 bp overlap
ChIP HEK293 ENCSR298QUH.MZF1.HEK293 521 bp overlap
NANOG 3 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 607 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 266 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 354 bp overlap
NR2C1 1 dataset
Motif DE_12h DE_12h-NR2C1_MA1535.2 6 bp overlap
NR2C2 1 dataset
Motif DE_12h DE_12h-NR2C2_MA1536.2 6 bp overlap
NR2F1 2 datasets
Motif DE_12h DE_12h-NR2F1_MA0017.3 12 bp overlap
Motif DE_12h DE_12h-NR2F1_MA1538.1 15 bp overlap
NR2F2 1 dataset
Motif DE_12h DE_12h-NR2F2_MA1111.2 7 bp overlap
NR2F6 1 dataset
Motif DE_12h DE_12h-NR2F6_MA1539.1 15 bp overlap
NR5A1 1 dataset
Motif DE_12h DE_12h-NR5A1_MA1540.3 12 bp overlap
NR6A1 1 dataset
Motif DE_12h DE_12h-NR6A1_MA1541.2 14 bp overlap
NRIP1 1 dataset
ChIP MCF-7 ERP005838.NRIP1.MCF-7 125 bp overlap
NUTM1 1 dataset
ChIP embryonic-kidney_induced GSE133122.NUTM1.embryonic-kidney_induced 345 bp overlap
Nr1H2 1 dataset
Motif DE_12h DE_12h-Nr1H2_MA1996.2 6 bp overlap
Nr1H4 1 dataset
Motif DE_12h DE_12h-Nr1H4_MA1110.3 6 bp overlap
Nr1h3 1 dataset
Motif DE_12h DE_12h-Nr1h3_MA2337.1 6 bp overlap
Nr2f6 1 dataset
Motif DE_12h DE_12h-Nr2f6_MA0677.2 13 bp overlap
Nr5A2 2 datasets
Motif DE_12h DE_12h-Nr5A2_MA0505.3 9 bp overlap
Motif DE_12h DE_12h-Nr5A2_MA0505.3 9 bp overlap
OSR2 4 datasets
Motif DE_12h DE_12h-OSR2_MA1646.2 8 bp overlap
ChIP HEK293 ENCFF875BDB 421 bp overlap
ChIP HEK293 ENCSR324LTM.OSR2.HEK293 309 bp overlap
ChIP HEK293 GSE76494.OSR2.HEK293 174 bp overlap
PATZ1 2 datasets
ChIP HEK293 ENCFF016MNJ 181 bp overlap
ChIP HEK293 ENCSR966ULI.PATZ1.HEK293 355 bp overlap
PHIP 1 dataset
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 659 bp overlap
PKNOX1 2 datasets
ChIP HEK293T ENCFF174WDB 107 bp overlap
ChIP HEK293T ENCSR233FAG.PKNOX1.HEK293T 259 bp overlap
POU5F1 2 datasets
ChIP BJ_INDUCED GSE36570.POU5F1.BJ_INDUCED 214 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 523 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 265 bp overlap
PRDM10 1 dataset
ChIP HEK293 ENCFF145WQQ 368 bp overlap
PRDM6 1 dataset
ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 235 bp overlap
Ppara 1 dataset
Motif DE_12h DE_12h-Ppara_MA2338.1 7 bp overlap
Pparg::Rxra 3 datasets
Motif DE_12h DE_12h-PpargRxra_MA0065.3 13 bp overlap
Motif DE_24h DE_24h-PpargRxra_MA0065.3 13 bp overlap
Motif ES_0h ES_0h-PpargRxra_MA0065.3 13 bp overlap
Ptf1A 1 dataset
Motif DE_12h DE_12h-Ptf1A_MA1620.2 8 bp overlap
RAD21 2 datasets
ChIP HEK293_siCtrl GSE130135.RAD21.HEK293_siCtrl 103 bp overlap
ChIP HEK293_siYAP GSE130135.RAD21.HEK293_siYAP 50 bp overlap
RBBP5 2 datasets
ChIP H1 ENCFF905HFL 227 bp overlap
ChIP WA01 ENCSR000AQC.RBBP5.WA01 524 bp overlap
RORA 1 dataset
Motif DE_12h DE_12h-RORA_MA0071.1 10 bp overlap
RREB1 1 dataset
Motif DE_12h DE_12h-RREB1_MA0073.2 19 bp overlap
SIX1 3 datasets
Motif DE_12h DE_12h-SIX1_MA1118.2 9 bp overlap
Motif DE_24h DE_24h-SIX1_MA1118.2 9 bp overlap
Motif ES_0h ES_0h-SIX1_MA1118.2 9 bp overlap
SIX2 3 datasets
Motif DE_12h DE_12h-SIX2_MA1119.2 11 bp overlap
Motif DE_24h DE_24h-SIX2_MA1119.2 11 bp overlap
Motif ES_0h ES_0h-SIX2_MA1119.2 11 bp overlap
SIX4 1 dataset
ChIP WTC11 ENCFF891HYW 377 bp overlap
SMARCA4 1 dataset
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 382 bp overlap
SNAI2 1 dataset
Motif DE_12h DE_12h-SNAI2_MA0745.3 8 bp overlap
SNAI3 1 dataset
Motif DE_12h DE_12h-SNAI3_MA1559.2 9 bp overlap
SOX2 1 dataset
ChIP HNSC GSE69479.SOX2.HNSC 116 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 157 bp overlap
SP7 1 dataset
ChIP HEK293 ENCSR468IJT.SP7.HEK293 395 bp overlap
SPIB 1 dataset
Motif DE_12h DE_12h-SPIB_MA0081.3 13 bp overlap
STAT1::STAT2 2 datasets
Motif DE_12h DE_12h-STAT1STAT2_MA0517.2 13 bp overlap
Motif DE_12h DE_12h-STAT1STAT2_MA0517.2 13 bp overlap
STAT3 1 dataset
ChIP T-47D_JC5056 GSE126004.STAT3.T-47D_JC5056 185 bp overlap
Six4 3 datasets
Motif DE_12h DE_12h-Six4_MA2001.2 7 bp overlap
Motif DE_24h DE_24h-Six4_MA2001.2 7 bp overlap
Motif ES_0h ES_0h-Six4_MA2001.2 7 bp overlap
Spi1 1 dataset
Motif DE_12h DE_12h-Spi1_MA0080.7 13 bp overlap
Stat2 2 datasets
Motif DE_12h DE_12h-Stat2_MA1623.2 10 bp overlap
Motif DE_12h DE_12h-Stat2_MA1623.2 10 bp overlap
Stat6 3 datasets
Motif DE_12h DE_12h-Stat6_MA0520.2 10 bp overlap
Motif DE_24h DE_24h-Stat6_MA0520.2 10 bp overlap
Motif ES_0h ES_0h-Stat6_MA0520.2 10 bp overlap
TBX5 1 dataset
Motif DE_12h DE_12h-TBX5_MA0807.1 8 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 125 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 315 bp overlap
TRIM28 2 datasets
ChIP HEK293 ENCSR618HNF.TRIM28.HEK293 320 bp overlap
ChIP U2OS ENCSR000EYC.TRIM28.U2OS 413 bp overlap
Tfcp2l1 1 dataset
Motif DE_12h DE_12h-Tfcp2l1_MA0145.2 14 bp overlap
VEZF1 1 dataset
Motif DE_12h DE_12h-VEZF1_MA1578.2 6 bp overlap
YY1 1 dataset
ChIP Hep-G2_RBM25-KD GSE120104.YY1.Hep-G2_RBM25-KD 259 bp overlap
ZBTB12 2 datasets
ChIP HEK293 ENCFF963HPT 331 bp overlap
ChIP HEK293 ENCSR543KOA.ZBTB12.HEK293 372 bp overlap
ZBTB17 1 dataset
ChIP HEK293 ENCFF865LIO 228 bp overlap
ZBTB20 2 datasets
ChIP HEK293 ENCFF524ADK 617 bp overlap
ChIP HEK293 ENCSR460MBI.ZBTB20.HEK293 688 bp overlap
ZBTB24 1 dataset
ChIP HCT-116 GSE111683.ZBTB24.HCT-116 343 bp overlap
ZBTB48 2 datasets
ChIP HEK293 ENCFF809BPK 270 bp overlap
ChIP HEK293 ENCSR781EQJ.ZBTB48.HEK293 516 bp overlap
ZBTB7B 1 dataset
Motif DE_12h DE_12h-ZBTB7B_MA0694.2 10 bp overlap
ZEB1 1 dataset
Motif DE_12h DE_12h-ZEB1_MA0103.4 6 bp overlap
ZEB2 3 datasets
ChIP HEK293 ENCFF847JIE 551 bp overlap
ChIP HEK293 ENCFF847JIE 464 bp overlap
ChIP HEK293 ENCSR417VWF.ZEB2.HEK293 642 bp overlap
ZFHX2 1 dataset
ChIP HEK293 ENCFF167TUA 447 bp overlap
ZFP37 1 dataset
ChIP HEK293 ENCSR365GRX.ZFP37.HEK293 340 bp overlap
ZFP69B 2 datasets
ChIP HEK293 ENCFF942LFP 421 bp overlap
ChIP HEK293 ENCSR381VYR.ZFP69B.HEK293 589 bp overlap
ZIM3 1 dataset
Motif DE_12h DE_12h-ZIM3_MA1709.2 11 bp overlap
ZNF184 5 datasets
Motif DE_12h DE_12h-ZNF184_MA2120.1 13 bp overlap
Motif DE_24h DE_24h-ZNF184_MA2120.1 13 bp overlap
Motif ES_0h ES_0h-ZNF184_MA2120.1 13 bp overlap
ChIP HEK293 ENCSR020UPN.ZNF184.HEK293 276 bp overlap
ChIP HEK293T GSE78099.ZNF184.HEK293T 379 bp overlap
ZNF189 2 datasets
ChIP HEK293 ENCFF638TIB 501 bp overlap
ChIP HEK293 ENCSR163RYW.ZNF189.HEK293 284 bp overlap
ZNF2 1 dataset
ChIP HEK293 ENCSR011CKE.ZNF2.HEK293 487 bp overlap
ZNF24 1 dataset
ChIP HEK293 ENCSR984MDV.ZNF24.HEK293 570 bp overlap
ZNF281 2 datasets
Motif DE_12h DE_12h-ZNF281_MA1630.3 10 bp overlap
ChIP HEK293 GSE76494.ZNF281.HEK293 152 bp overlap
ZNF320 2 datasets
ChIP HEK293 GSE76494.ZNF320.HEK293 258 bp overlap
ChIP HEK293T GSE78099.ZNF320.HEK293T 99 bp overlap
ZNF335 1 dataset
ChIP HEK293 ENCFF784SLD 555 bp overlap
ZNF341 1 dataset
ChIP HEK293 GSE76494.ZNF341.HEK293 222 bp overlap
ZNF366 3 datasets
ChIP HEK293 ENCFF799ATK 551 bp overlap
ChIP HEK293 ENCFF799ATK 477 bp overlap
ChIP HEK293 ENCSR106EBH.ZNF366.HEK293 426 bp overlap
ZNF398 3 datasets
ChIP HEK293 ENCFF184XEW 457 bp overlap
ChIP HEK293 ENCFF184XEW 403 bp overlap
ChIP HEK293 ENCSR676ZEF.ZNF398.HEK293 579 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 251 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 473 bp overlap
ZNF518A 2 datasets
ChIP HEK293 ENCFF892ULS 441 bp overlap
ChIP HEK293 ENCSR159GFL.ZNF518A.HEK293 605 bp overlap
ZNF561 2 datasets
ChIP HEK293 ENCFF399XKF 441 bp overlap
ChIP HEK293 ENCSR125ULS.ZNF561.HEK293 357 bp overlap
ZNF629 2 datasets
ChIP HEK293 ENCFF096ELQ 174 bp overlap
ChIP HEK293 ENCSR351NON.ZNF629.HEK293 555 bp overlap
ZNF692 3 datasets
ChIP HEK293 ENCFF040AZE 265 bp overlap
ChIP HEK293 ENCFF040AZE 130 bp overlap
ChIP HEK293 ENCSR418MKG.ZNF692.HEK293 641 bp overlap
ZNF768 3 datasets
Motif DE_12h DE_12h-ZNF768_MA1731.2 9 bp overlap
Motif DE_24h DE_24h-ZNF768_MA1731.2 9 bp overlap
Motif ES_0h ES_0h-ZNF768_MA1731.2 9 bp overlap
ZNF778 1 dataset
ChIP HEK293 GSE76494.ZNF778.HEK293 177 bp overlap
ZSCAN21 4 datasets
Motif DE_12h DE_12h-ZSCAN21_MA2336.1 7 bp overlap
ChIP HEK293 ENCFF582WUP 441 bp overlap
ChIP HEK293 ENCFF582WUP 438 bp overlap
ChIP HEK293 ENCSR253CKN.ZSCAN21.HEK293 473 bp overlap
ZSCAN30 2 datasets
ChIP HEK293 ENCFF082YBI 337 bp overlap
ChIP HEK293 ENCSR768VNZ.ZSCAN30.HEK293 190 bp overlap
ZSCAN5C 2 datasets
ChIP HEK293 ENCFF343DTU 357 bp overlap
ChIP HEK293 ENCSR731AGO.ZSCAN5C.HEK293 263 bp overlap
ZXDB 1 dataset
ChIP HEK293 ENCSR559IOZ.ZXDB.HEK293 447 bp overlap