chr12 : 107,864,203 – 107,864,687
484 bp 117 TFs 4 linked genes
This 484 bp open chromatin element is linked to 4 target genes and is bound by 117 transcription factors.
Linked Genes
4 genes
Distance
Link type
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
ENSG00000257398 at TSS At TSS Proximity
PRDM4 103.3 kb Distal Multiome
PWP1 178.8 kb Distal Multiome
ABTB3 546.1 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:107,859,203 – 107,869,687
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
117 transcription factors
Source
Cell type
ARID4A 1 dataset
ChIP Hep-G2 ENCSR386UBO.ARID4A.Hep-G2 178 bp overlap
ASH2L 3 datasets
ChIP H1 ENCFF399KAM 484 bp overlap
ChIP H1 ENCFF399KAM 381 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 443 bp overlap
BAF155 1 dataset
ChIP VCaP_shERG GSE110655.BAF155.VCaP_shERG 166 bp overlap
BCOR 3 datasets
ChIP WA01 GSE104690.BCOR.WA01 379 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 436 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 484 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 201 bp overlap
BRD4 3 datasets
ChIP 22Rv1_DHT-ABBV-744 GSE118247.BRD4.22Rv1_DHT-ABBV-744 252 bp overlap
ChIP COLO-741 GSE73319.BRD4.COLO-741 238 bp overlap
ChIP MCF-7_ARID1A-KO_4-OHT GSE123284.BRD4.MCF-7_ARID1A-KO_4-OHT 249 bp overlap
CBFB 1 dataset
ChIP ME-1 GSE46044.CBFB.ME-1 268 bp overlap
CHD1 1 dataset
ChIP WA01 ENCSR000AQK.CHD1.WA01 370 bp overlap
CREB1 1 dataset
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 194 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 285 bp overlap
CTCF 3 datasets
ChIP T-47D_NaCl-isotonic GSE111923.CTCF.T-47D_NaCl-isotonic 309 bp overlap
ChIP T-47D_NaCl-isotonic-triptolide GSE111923.CTCF.T-47D_NaCl-isotonic-triptolide 353 bp overlap
ChIP T-47D_NaCl-triptolide GSE111923.CTCF.T-47D_NaCl-triptolide 344 bp overlap
CTCFL 1 dataset
ChIP K-562 GSE70764.CTCFL.K-562 147 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF364PUR 251 bp overlap
E2F1 3 datasets
ChIP LNCaP_shRB GSE94958.E2F1.LNCaP_shRB 305 bp overlap
ChIP MCF-7 ENCFF692OYJ 438 bp overlap
ChIP MCF-7 ENCSR000EWX.E2F1.MCF-7 379 bp overlap
E2F6 3 datasets
ChIP H1 ENCFF785DWK 335 bp overlap
ChIP K-562 ENCSR000BLI.E2F6.K-562 141 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 459 bp overlap
ELF1 2 datasets
ChIP A-549 GSE122203.ELF1.A-549 177 bp overlap
ChIP ME-1 GSE46044.ELF1.ME-1 214 bp overlap
ERG 3 datasets
ChIP CD34_NR29 GSE23730.ERG.CD34_NR29 288 bp overlap
ChIP MCF-7 GSE23730.ERG.MCF-7 290 bp overlap
ChIP TSU-1621MT GSE60477.ERG.TSU-1621MT 213 bp overlap
ESR1 6 datasets
ChIP Ishikawa GSE99905.ESR1.Ishikawa 329 bp overlap
ChIP MCF-7 GSE48930.ESR1.MCF-7 212 bp overlap
ChIP MCF-7_SHCTR_E2_TNF GSE59530.ESR1.MCF-7_SHCTR_E2_TNF 129 bp overlap
ChIP T-47D_DMSO GSE148277.ESR1.T-47D_DMSO 263 bp overlap
ChIP T-47D_Y537S GSE148277.ESR1.T-47D_Y537S 327 bp overlap
ChIP breast_tumor_Male_21 GSE104399.ESR1.breast_tumor_Male_21 209 bp overlap
EZH2 23 datasets
ChIP A-673 ENCSR179SAO.EZH2.A-673 474 bp overlap
ChIP GM23338 ENCFF613YON 154 bp overlap
ChIP GM23338 ENCSR045YHA.EZH2.GM23338 476 bp overlap
ChIP H1 ENCFF232NZA 424 bp overlap
ChIP Hep-3B2-1-7 GSE128137.EZH2.Hep-3B2-1-7 349 bp overlap
ChIP HepG2 ENCFF912EIW 484 bp overlap
ChIP LNCaP-abl GSE39459.EZH2.LNCaP-abl 407 bp overlap
ChIP ProEs_SHCTR GSE59087.EZH2.ProEs_SHCTR 183 bp overlap
ChIP SF8628 GSE94834.EZH2.SF8628 148 bp overlap
ChIP WA01 ENCSR000ASY.EZH2.WA01 484 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 484 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 405 bp overlap
ChIP fibroblast_DERMAL ENCSR000ASE.EZH2.fibroblast_DERMAL 403 bp overlap
ChIP hESC GSE113817.EZH2.hESC 351 bp overlap
ChIP hESC_KO GSE113817.EZH2.hESC_KO 379 bp overlap
ChIP hepatocyte ENCSR384LYW.EZH2.hepatocyte 421 bp overlap
ChIP keratinocyte ENCFF070STK 484 bp overlap
ChIP keratinocyte ENCFF070STK 358 bp overlap
ChIP keratinocyte ENCSR000ARK.EZH2.keratinocyte 394 bp overlap
ChIP neural progenitor cell ENCFF472NFV 484 bp overlap
ChIP neural_progenitor ENCSR069DPL.EZH2.neural_progenitor 484 bp overlap
ChIP prostate-cancer_HA GSE107780.EZH2.prostate-cancer_HA 184 bp overlap
ChIP prostate-cancer_plko GSE107780.EZH2.prostate-cancer_plko 262 bp overlap
EZH2_phosphoT487 4 datasets
ChIP PC-3 ENCSR617RSQ.EZH2_phosphoT487.PC-3 298 bp overlap
ChIP hepatocyte ENCSR341VYI.EZH2_phosphoT487.hepatocyte 366 bp overlap
ChIP neural_progenitor ENCSR656MXA.EZH2_phosphoT487.neural_progenitor 451 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR886KKK.EZH2_phosphoT487.neuron_bipolar_doxy_4d 484 bp overlap
FLI1 2 datasets
ChIP TSU-1621MT GSE60477.FLI1.TSU-1621MT 202 bp overlap
ChIP UAE_ZINC GSE23730.FLI1.UAE_ZINC 224 bp overlap
FOXP1 1 dataset
ChIP WTC11 ENCFF338WGC 410 bp overlap
GATA2 1 dataset
ChIP ME-1_CBFB-MYH11-KD GSE117138.GATA2.ME-1_CBFB-MYH11-KD 282 bp overlap
GATA6 2 datasets
ChIP DE_D1 S41-DE-d1-GATA6-exp2 275 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 286 bp overlap
GTF3C2 1 dataset
ChIP H9 GSE94418.GTF3C2.H9 204 bp overlap
HDAC1 2 datasets
ChIP PC-3 GSE147455.HDAC1.PC-3 144 bp overlap
ChIP PC-3_GDC-resist GSE147455.HDAC1.PC-3_GDC-resist 337 bp overlap
HDAC2 1 dataset
ChIP WA01 ENCSR000AVB.HDAC2.WA01 321 bp overlap
HEXIM1 1 dataset
ChIP HCT-116 GSE72622.HEXIM1.HCT-116 256 bp overlap
HIF3A 1 dataset
ChIP Hep-3B2-1-7 GSE129491.HIF3A.Hep-3B2-1-7 349 bp overlap
HMGN3 1 dataset
ChIP K-562 ENCSR000DOB.HMGN3.K-562 176 bp overlap
HMGXB4 2 datasets
ChIP WTC11 ENCFF962POR 484 bp overlap
ChIP WTC11 ENCFF962POR 405 bp overlap
HOXB13 1 dataset
ChIP prostate_P25 GSE130408.HOXB13.prostate_P25 174 bp overlap
IKZF3 1 dataset
ChIP HEK293 ENCSR304AMN.IKZF3.HEK293 320 bp overlap
IRF1 1 dataset
ChIP K-562_EPZ GSE129380.IRF1.K-562_EPZ 241 bp overlap
JARID2 8 datasets
ChIP AMIPS6 GSE48516.JARID2.AMIPS6 302 bp overlap
ChIP EDOMIPS2 GSE48516.JARID2.EDOMIPS2 276 bp overlap
ChIP MRC-5_IPS25 GSE48516.JARID2.MRC-5_IPS25 309 bp overlap
ChIP MRC-5_IPS25_CTR GSE48515.JARID2.MRC-5_IPS25_CTR 484 bp overlap
ChIP MRC-5_IPS25_MEG3 GSE48515.JARID2.MRC-5_IPS25_MEG3 484 bp overlap
ChIP UTEIPS11 GSE48516.JARID2.UTEIPS11 305 bp overlap
ChIP UTEIPS6 GSE48516.JARID2.UTEIPS6 472 bp overlap
ChIP UTEIPS7 GSE48516.JARID2.UTEIPS7 435 bp overlap
KDM4A 5 datasets
ChIP H1 ENCFF078LED 443 bp overlap
ChIP WA01 ENCSR000AVC.KDM4A.WA01 475 bp overlap
ChIP hiPSC_IA12 GSE106870.KDM4A.hiPSC_IA12 463 bp overlap
ChIP hiPSC_IIA11 GSE106870.KDM4A.hiPSC_IIA11 459 bp overlap
ChIP hiPSC_IID12 GSE106870.KDM4A.hiPSC_IID12 351 bp overlap
KDM5B 1 dataset
ChIP Hep-G2 ENCSR227MRE.KDM5B.Hep-G2 286 bp overlap
MAF1 1 dataset
ChIP THP-1_macrophage_PMA GSE96800.MAF1.THP-1_macrophage_PMA 163 bp overlap
MAX 7 datasets
ChIP H1 ENCFF914VQY 266 bp overlap
ChIP H1 ENCFF914VQY 357 bp overlap
ChIP Hep-G2 ENCSR168DYA.MAX.Hep-G2 206 bp overlap
ChIP HepG2 ENCFF507HCX 437 bp overlap
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 254 bp overlap
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 268 bp overlap
ChIP WTC11 ENCFF223QFY 421 bp overlap
MAZ 1 dataset
ChIP HEK293 GSE76494.MAZ.HEK293 253 bp overlap
MED1 1 dataset
ChIP MCF-7_SHRARS GSE60270.MED1.MCF-7_SHRARS 178 bp overlap
MITF 2 datasets
ChIP 501-mel_20ng_K243R GSE137522.MITF.501-mel_20ng_K243R 141 bp overlap
ChIP 501-mel_K243Q GSE137522.MITF.501-mel_K243Q 224 bp overlap
MNX1 1 dataset
ChIP Hep-G2 ENCSR108MKR.MNX1.Hep-G2 175 bp overlap
MTA1 1 dataset
ChIP Hep-G2 ENCSR983KRB.MTA1.Hep-G2 209 bp overlap
MYC 1 dataset
ChIP CD34 GSE85488.MYC.CD34 172 bp overlap
MYC-DAXX 1 dataset
ChIP HEK293_GAL4-DBD GSE107348.MYC-DAXX.HEK293_GAL4-DBD 317 bp overlap
MYCN 1 dataset
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 257 bp overlap
MYOCD 1 dataset
ChIP A-549 GSE128921.MYOCD.A-549 280 bp overlap
NANOG 2 datasets
ChIP WA01 ERP004238.NANOG.WA01 227 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 255 bp overlap
NCAPH2 1 dataset
ChIP HEK293 GSE97540.NCAPH2.HEK293 323 bp overlap
NFE2L1 2 datasets
ChIP WTC11 ENCFF644BPU 321 bp overlap
ChIP WTC11 ENCFF644BPU 340 bp overlap
NR2F2 2 datasets
ChIP MCF-7_E2 GSE132432.NR2F2.MCF-7_E2 398 bp overlap
ChIP MCF-7_Veh GSE132432.NR2F2.MCF-7_Veh 408 bp overlap
NRL 1 dataset
ChIP retina_Hu13 GSE137311.NRL.retina_Hu13 220 bp overlap
OSR2 1 dataset
Motif DE_12h DE_12h-OSR2_MA1646.2 8 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 484 bp overlap
PCGF2 1 dataset
ChIP NT2-D1 GSE101538.PCGF2.NT2-D1 484 bp overlap
PHIP 1 dataset
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 256 bp overlap
POU2F1 2 datasets
ChIP T-47D GSE148277.POU2F1.T-47D 276 bp overlap
ChIP T-47D_D538G GSE148277.POU2F1.T-47D_D538G 206 bp overlap
POU5F1 2 datasets
ChIP BG03 GSE21614.POU5F1.BG03 262 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 311 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 312 bp overlap
RAD21 1 dataset
ChIP neural ENCSR198ZYJ.RAD21.neural 300 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 399 bp overlap
REST 1 dataset
ChIP neural ENCSR000BTV.REST.neural 158 bp overlap
RNF2 3 datasets
ChIP WA01 ENCSR784VUY.RNF2.WA01 433 bp overlap
ChIP WA01 GSE104690.RNF2.WA01 372 bp overlap
ChIP WA09 GSE105028.RNF2.WA09 286 bp overlap
RORC 2 datasets
ChIP HCC70 GSE126380.RORC.HCC70 361 bp overlap
ChIP HCC70_XY018 GSE126380.RORC.HCC70_XY018 279 bp overlap
RXR 1 dataset
ChIP TSU-1621MT GSE60477.RXR.TSU-1621MT 172 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 440 bp overlap
SALL2 1 dataset
ChIP HEK293 GSE145940.SALL2.HEK293 243 bp overlap
SIN3A 1 dataset
ChIP WA01 ENCSR000EBO.SIN3A.WA01 161 bp overlap
SIRT6 1 dataset
ChIP SK-MEL-239_L-C-B GSE102813.SIRT6.SK-MEL-239_L-C-B 201 bp overlap
SMARCA4 4 datasets
ChIP 22Rv1 GSE115615.SMARCA4.22Rv1 421 bp overlap
ChIP 22Rv1_PTEN-KO GSE115615.SMARCA4.22Rv1_PTEN-KO 454 bp overlap
ChIP MCF-7 GSE123284.SMARCA4.MCF-7 318 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 169 bp overlap
SMC3 1 dataset
ChIP neural ENCSR404BPV.SMC3.neural 335 bp overlap
SNAI2 1 dataset
ChIP SMS-CTR_T48 GSE137168.SNAI2.SMS-CTR_T48 166 bp overlap
SOX2 1 dataset
ChIP RENVM GSE49404.SOX2.RENVM 246 bp overlap
SPI1 1 dataset
ChIP macrophage_IL4 GSE47188.SPI1.macrophage_IL4 239 bp overlap
SREBP2 3 datasets
ChIP HCC70 GSE126380.SREBP2.HCC70 307 bp overlap
ChIP HCC70_XY018 GSE126380.SREBP2.HCC70_XY018 327 bp overlap
ChIP monocyte_TNF GSE129202.SREBP2.monocyte_TNF 180 bp overlap
STAT3 1 dataset
ChIP WA01 ERP004237.STAT3.WA01 268 bp overlap
SUZ12 9 datasets
ChIP CRL-7250_shSS18 GSE108025.SUZ12.CRL-7250_shSS18 333 bp overlap
ChIP CRL-7250_shSS18-SSX GSE108025.SUZ12.CRL-7250_shSS18-SSX 484 bp overlap
ChIP H1 ENCFF881NFR 484 bp overlap
ChIP NCCIT GSE71675.SUZ12.NCCIT 246 bp overlap
ChIP NT2-D1 ENCSR000EXH.SUZ12.NT2-D1 469 bp overlap
ChIP NT2-D1 GSE101538.SUZ12.NT2-D1 457 bp overlap
ChIP WA01 ENCSR000ATS.SUZ12.WA01 370 bp overlap
ChIP hiPSC GSE124903.SUZ12.hiPSC 467 bp overlap
ChIP hiPSC_WT GSE124903.SUZ12.hiPSC_WT 456 bp overlap
Stat5b 1 dataset
Motif DE_12h DE_12h-Stat5b_MA1625.2 9 bp overlap
TAF1 1 dataset
ChIP WA01 ENCSR000BHO.TAF1.WA01 148 bp overlap
TAF15 2 datasets
ChIP Hep-G2 ENCSR825MZS.TAF15.Hep-G2 170 bp overlap
ChIP Hep-G2 GSE120104.TAF15.Hep-G2 170 bp overlap
TBL1X 1 dataset
ChIP HEK293T GSE35197.TBL1X.HEK293T 189 bp overlap
TBP 5 datasets
ChIP H1 ENCFF859IIO 310 bp overlap
ChIP WA01 ENCSR000ECB.TBP.WA01 161 bp overlap
ChIP hiPSC_WTa_RNase-neg GSE128135.TBP.hiPSC_WTa_RNase-neg 228 bp overlap
ChIP hiPSC_WTb_RNase-neg GSE128135.TBP.hiPSC_WTb_RNase-neg 251 bp overlap
ChIP hiPSC_WTb_RNase-pos GSE128135.TBP.hiPSC_WTb_RNase-pos 243 bp overlap
TFE3 1 dataset
ChIP K562 ENCFF697ABG 54 bp overlap
TFIIIC 1 dataset
ChIP HEK293 GSE119418.TFIIIC.HEK293 350 bp overlap
THAP1 1 dataset
ChIP K-562 ENCSR000BNN.THAP1.K-562 110 bp overlap
TRIM24 1 dataset
ChIP LNCaP-abl_ETOH GSE69331.TRIM24.LNCaP-abl_ETOH 378 bp overlap
TRIM25 1 dataset
ChIP BT-549 GSE79588.TRIM25.BT-549 237 bp overlap
TRIM28 1 dataset
ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 295 bp overlap
UBTF 2 datasets
ChIP HepG2 ENCFF424RNN 474 bp overlap
ChIP K-562 ENCSR000EFZ.UBTF.K-562 103 bp overlap
USF2 1 dataset
ChIP WTC11 ENCFF139JAW 281 bp overlap
WDR5 1 dataset
ChIP SMMC-7721 GSE126982.WDR5.SMMC-7721 431 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 123 bp overlap
ZBTB14 1 dataset
ChIP HEK293 GSE76494.ZBTB14.HEK293 270 bp overlap
ZBTB17 1 dataset
ChIP HEK293 ENCFF865LIO 228 bp overlap
ZBTB20 3 datasets
ChIP HEK293 ENCFF524ADK 375 bp overlap
ChIP HEK293 ENCFF524ADK 319 bp overlap
ChIP HEK293 ENCSR460MBI.ZBTB20.HEK293 484 bp overlap
ZBTB26 4 datasets
ChIP HEK293 ENCFF752POA 484 bp overlap
ChIP HEK293 ENCFF752TCU 484 bp overlap
ChIP HEK293 ENCSR229DYF.ZBTB26.HEK293 484 bp overlap
ChIP HEK293 GSE76494.ZBTB26.HEK293 224 bp overlap
ZBTB33 1 dataset
ChIP WTC11 ENCFF048CFR 275 bp overlap
ZBTB7A 1 dataset
ChIP VCaP_DHT GSE123089.ZBTB7A.VCaP_DHT 146 bp overlap
ZBTB8A 2 datasets
ChIP HEK293 ENCFF303WRD 464 bp overlap
ChIP HEK293 ENCSR481FEC.ZBTB8A.HEK293 377 bp overlap
ZFP64 1 dataset
ChIP HEK293 GSE76494.ZFP64.HEK293 304 bp overlap
ZFX 1 dataset
ChIP HEK293T_22Rv1 GSE145160.ZFX.HEK293T_22Rv1 383 bp overlap
ZNF143 1 dataset
ChIP MCF-7 GSE76454.ZNF143.MCF-7 162 bp overlap
ZNF189 1 dataset
ChIP HEK293 ENCSR163RYW.ZNF189.HEK293 320 bp overlap
ZNF263 1 dataset
ChIP HEK293 ENCFF336CWQ 484 bp overlap
ZNF320 1 dataset
ChIP HEK293 GSE76494.ZNF320.HEK293 185 bp overlap
ZNF335 2 datasets
ChIP HEK293 ENCFF784SLD 426 bp overlap
ChIP HEK293 ENCSR328SUD.ZNF335.HEK293 484 bp overlap
ZNF366 1 dataset
ChIP HEK293 ENCSR106EBH.ZNF366.HEK293 399 bp overlap
ZNF394 1 dataset
ChIP HEK293 ENCSR125DNC.ZNF394.HEK293 289 bp overlap
ZNF407 1 dataset
ChIP Hep-G2 ENCSR005WGY.ZNF407.Hep-G2 202 bp overlap
ZNF449 3 datasets
Motif DE_12h DE_12h-ZNF449_MA1656.2 10 bp overlap
ChIP HEK293 ENCFF764ZIC 380 bp overlap
ChIP HEK293 ENCSR738SLS.ZNF449.HEK293 356 bp overlap
ZNF528 1 dataset
ChIP HEK293 GSE76494.ZNF528.HEK293 236 bp overlap
ZNF660 2 datasets
ChIP HEK293 ENCFF282RUS 338 bp overlap
ChIP HEK293 ENCSR283DOU.ZNF660.HEK293 304 bp overlap
ZNF687 2 datasets
ChIP HepG2 ENCFF653WIX 484 bp overlap
ChIP HepG2 ENCFF653WIX 484 bp overlap
ZNF770 1 dataset
ChIP HEK293 GSE76494.ZNF770.HEK293 155 bp overlap
ZNF800 1 dataset
ChIP Hep-G2 ENCSR701WPG.ZNF800.Hep-G2 232 bp overlap
ZSCAN30 1 dataset
ChIP HEK293 ENCSR768VNZ.ZSCAN30.HEK293 260 bp overlap
Huangfu Lab · Publications · Resources · Contact