chr1 : 1,692,460 – 1,692,603
143 bp 131 TFs 2 linked genes
This 143 bp open chromatin element is linked to SLC35E2B and MMP23A and is bound by 131 transcription factors.
Linked Genes
2 genes
Distance
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
SLC35E2B 191 bp At TSS Proximity
MMP23A 7.3 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:1,687,460 – 1,697,603
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
131 transcription factors
Source
Cell type
ARID4A 1 dataset
ChIP HepG2 ENCFF142DIE 143 bp overlap
ARID4B 1 dataset
ChIP HepG2 ENCFF519OXJ 143 bp overlap
ATF1 1 dataset
ChIP K562 ENCFF817JQF 143 bp overlap
ATF7 1 dataset
ChIP K562 ENCFF308SKS 143 bp overlap
BCOR 1 dataset
ChIP K562 ENCFF343XWA 143 bp overlap
BRD1 1 dataset
ChIP RKO GSE47190.BRD1.RKO 92 bp overlap
BRD4 1 dataset
ChIP Jurkat GSE83777.BRD4.Jurkat 96 bp overlap
CCNT2 1 dataset
ChIP K562 ENCFF199GSZ 129 bp overlap
CREB1 1 dataset
ChIP GM23338 ENCFF432ZEW 143 bp overlap
CTCF 1 dataset
ChIP dorsolateral prefrontal cortex ENCFF433UFM 143 bp overlap
CTCFL 1 dataset
ChIP K-562 GSE70764.CTCFL.K-562 87 bp overlap
CXXC5 1 dataset
ChIP K562 ENCFF497CZN 143 bp overlap
DDX20 1 dataset
ChIP K562 ENCFF205RDN 85 bp overlap
E2F1 4 datasets
ChIP HeLa-S3 ENCFF877AEN 143 bp overlap
ChIP HeLa-S3 ENCSR000EVM.E2F1.HeLa-S3 143 bp overlap
ChIP K562 ENCFF749FMR 143 bp overlap
ChIP U-87MG_GBM GSE99171.E2F1.U-87MG_GBM 98 bp overlap
E2F4 2 datasets
ChIP HepG2 ENCFF311TOD 143 bp overlap
ChIP HepG2 ENCFF311TOD 63 bp overlap
E2F6 2 datasets
ChIP K-562 ENCSR000EWJ.E2F6.K-562 143 bp overlap
ChIP K562 ENCFF136LTS 143 bp overlap
E2F7 1 dataset
ChIP K562 ENCFF212JSU 143 bp overlap
EGR1 1 dataset
ChIP HepG2 ENCFF674RQO 67 bp overlap
ELF1 1 dataset
ChIP ME-1 GSE46044.ELF1.ME-1 80 bp overlap
EP400 1 dataset
ChIP K562 ENCFF850OZQ 143 bp overlap
ERG 3 datasets
ChIP K-562_DOX GSE23730.ERG.K-562_DOX 90 bp overlap
ChIP ME-1 GSE46044.ERG.ME-1 143 bp overlap
ChIP TSU-1621MT GSE60477.ERG.TSU-1621MT 143 bp overlap
FIP1L1 2 datasets
ChIP K562 ENCFF363ZMN 143 bp overlap
ChIP K562 ENCFF363ZMN 52 bp overlap
FLI1 3 datasets
ChIP ME-1 GSE46044.FLI1.ME-1 61 bp overlap
ChIP UAE GSE23730.FLI1.UAE 143 bp overlap
ChIP UAE_ZINC GSE23730.FLI1.UAE_ZINC 143 bp overlap
FOXP2 1 dataset
ChIP PFSK1 ENCSR000BGA.FOXP2.PFSK1 75 bp overlap
Foxn1 1 dataset
Motif DE_24h DE_24h-Foxn1_MA1684.1 6 bp overlap
GABPA 2 datasets
ChIP K562 ENCFF139LXS 143 bp overlap
ChIP liver ENCFF500III 85 bp overlap
GABPB1 3 datasets
ChIP HepG2 ENCFF315AWN 143 bp overlap
ChIP K562 ENCFF015GDS 143 bp overlap
ChIP K562 ENCFF885NMS 143 bp overlap
GATA2 1 dataset
ChIP ME-1 GSE46044.GATA2.ME-1 74 bp overlap
GATAD1 1 dataset
ChIP HepG2 ENCFF044OVE 143 bp overlap
GLIS1 1 dataset
ChIP HEK293 ENCFF299RSE 143 bp overlap
GLIS2 1 dataset
ChIP HEK293 ENCFF446EIF 142 bp overlap
GTF2I 1 dataset
ChIP WTC11 ENCFF255XXZ 143 bp overlap
HDAC1 1 dataset
ChIP HepG2 ENCFF304IEJ 143 bp overlap
HMGXB4 1 dataset
ChIP HepG2 ENCFF179TAD 143 bp overlap
Hnf1A 1 dataset
Motif DE_24h DE_24h-Hnf1A_MA1991.2 10 bp overlap
JUN 1 dataset
ChIP A549 ENCFF846DUV 143 bp overlap
KDM2A 1 dataset
ChIP HepG2 ENCFF491GTR 143 bp overlap
KLF1 1 dataset
Motif DE_24h DE_24h-KLF1_MA0493.3 8 bp overlap
KLF14 1 dataset
Motif DE_24h DE_24h-KLF14_MA0740.2 9 bp overlap
KLF15 1 dataset
Motif DE_24h DE_24h-KLF15_MA1513.2 8 bp overlap
KLF17 1 dataset
ChIP HEK293 ENCFF658MHR 143 bp overlap
KLF2 1 dataset
Motif DE_24h DE_24h-KLF2_MA1515.2 8 bp overlap
KLF3 1 dataset
Motif DE_24h DE_24h-KLF3_MA1516.2 10 bp overlap
KLF4 1 dataset
Motif DE_24h DE_24h-KLF4_MA0039.5 8 bp overlap
KLF5 1 dataset
Motif DE_24h DE_24h-KLF5_MA0599.1 10 bp overlap
KLF7 1 dataset
Motif DE_24h DE_24h-KLF7_MA1959.2 8 bp overlap
KLF8 1 dataset
ChIP HEK293 ENCFF929IAJ 143 bp overlap
KLF9 1 dataset
ChIP HEK293 ENCFF588INF 143 bp overlap
L3MBTL2 1 dataset
ChIP K562 ENCFF320EQC 143 bp overlap
MAX 5 datasets
ChIP HeLa-S3 ENCFF398RFF 143 bp overlap
ChIP HepG2 ENCFF507HCX 143 bp overlap
ChIP K-562 ENCSR000EFV.MAX.K-562 95 bp overlap
ChIP K562 ENCFF524IJO 143 bp overlap
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 143 bp overlap
MAZ 8 datasets
Motif DE_24h DE_24h-MAZ_MA1522.2 8 bp overlap
ChIP GM12878 ENCFF453CES 143 bp overlap
ChIP HEK293 ENCFF994GSG 143 bp overlap
ChIP HeLa-S3 ENCFF212FIJ 143 bp overlap
ChIP IMR-90 ENCFF682IKN 143 bp overlap
ChIP K562 ENCFF333ZIV 143 bp overlap
ChIP K562 ENCFF809XHP 132 bp overlap
ChIP K562 ENCFF982GSZ 143 bp overlap
MED1 1 dataset
ChIP HepG2 ENCFF495TSS 143 bp overlap
MNT 2 datasets
ChIP K562 ENCFF342DNS 143 bp overlap
ChIP K562 ENCFF820IGH 143 bp overlap
MXI1 1 dataset
ChIP HepG2 ENCFF493ITN 143 bp overlap
MYC 3 datasets
ChIP NB4 ENCFF142PRP 143 bp overlap
ChIP NCI-H2171 GSE36354.MYC.NCI-H2171 143 bp overlap
ChIP P493-6 GSE77061.MYC.P493-6 143 bp overlap
NONO 2 datasets
ChIP HepG2 ENCFF819JPN 143 bp overlap
ChIP HepG2 ENCFF819JPN 88 bp overlap
PATZ1 3 datasets
Motif DE_24h DE_24h-PATZ1_MA1961.2 11 bp overlap
ChIP HEK293 ENCFF016MNJ 101 bp overlap
ChIP HEK293 ENCFF016MNJ 56 bp overlap
PCBP1 1 dataset
ChIP K562 ENCFF382QWQ 88 bp overlap
PHF20 1 dataset
ChIP HepG2 ENCFF609JBM 143 bp overlap
PHF8 4 datasets
ChIP H1 ENCFF427UFV 143 bp overlap
ChIP HepG2 ENCFF065NWR 143 bp overlap
ChIP K-562 ENCSR000AQH.PHF8.K-562 143 bp overlap
ChIP K562 ENCFF217UCA 143 bp overlap
POLR2A 43 datasets
ChIP GM12878 ENCFF263VRI 143 bp overlap
ChIP GM12878 ENCFF521FXC 143 bp overlap
ChIP GM12878 ENCFF521FXC 118 bp overlap
ChIP GM12892 ENCFF506PGQ 143 bp overlap
ChIP GM12892 ENCFF506PGQ 77 bp overlap
ChIP GM15510 ENCFF880HVJ 143 bp overlap
ChIP GM15510 ENCFF880HVJ 63 bp overlap
ChIP GM18505 ENCFF311CYB 143 bp overlap
ChIP GM18505 ENCFF311CYB 143 bp overlap
ChIP GM18526 ENCFF599EPS 143 bp overlap
ChIP GM19193 ENCFF599VTO 143 bp overlap
ChIP GM23338 ENCFF450WCS 143 bp overlap
ChIP GM23338 ENCFF450WCS 71 bp overlap
ChIP HeLa-S3 ENCFF224LWS 143 bp overlap
ChIP HeLa-S3 ENCFF224LWS 143 bp overlap
ChIP HeLa-S3 ENCFF773DNG 143 bp overlap
ChIP HeLa-S3 ENCFF773DNG 108 bp overlap
ChIP IMR-90 ENCFF672YWV 110 bp overlap
ChIP K562 ENCFF137JSF 143 bp overlap
ChIP K562 ENCFF137JSF 72 bp overlap
ChIP K562 ENCFF215CWW 143 bp overlap
ChIP K562 ENCFF262YXJ 143 bp overlap
ChIP K562 ENCFF757TUO 143 bp overlap
ChIP MCF-7 ENCFF309IKZ 143 bp overlap
ChIP PFSK-1 ENCFF576NIT 143 bp overlap
ChIP PFSK-1 ENCFF576NIT 101 bp overlap
ChIP SK-N-MC ENCFF088IVG 143 bp overlap
ChIP adrenal gland ENCFF843OBJ 143 bp overlap
ChIP body of pancreas ENCFF501FEC 143 bp overlap
ChIP body of pancreas ENCFF501FEC 133 bp overlap
ChIP body of pancreas ENCFF727UBE 143 bp overlap
ChIP breast epithelium ENCFF960NNA 143 bp overlap
ChIP endothelial cell of umbilical vein ENCFF303XUJ 143 bp overlap
ChIP erythroblast ENCFF498VMR 143 bp overlap
ChIP esophagus muscularis mucosa ENCFF759BBR 143 bp overlap
ChIP gastrocnemius medialis ENCFF145VIB 143 bp overlap
ChIP gastrocnemius medialis ENCFF145VIB 106 bp overlap
ChIP gastroesophageal sphincter ENCFF461UHJ 143 bp overlap
ChIP spleen ENCFF446ZGT 143 bp overlap
ChIP spleen ENCFF706IUS 143 bp overlap
ChIP thyroid gland ENCFF979LRR 143 bp overlap
ChIP transverse colon ENCFF193UMS 143 bp overlap
ChIP upper lobe of left lung ENCFF640VPA 143 bp overlap
POLR2G 2 datasets
ChIP K562 ENCFF047BLG 143 bp overlap
ChIP K562 ENCFF648YPL 143 bp overlap
POU5F1 1 dataset
ChIP DE_D1 DED1-OCT4_Batch_II 143 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 143 bp overlap
RARA 1 dataset
ChIP TSU-1621MT GSE60477.RARA.TSU-1621MT 143 bp overlap
RB1 1 dataset
ChIP K562 ENCFF627ZBG 143 bp overlap
RBFOX2 6 datasets
ChIP HepG2 ENCFF554DMZ 143 bp overlap
ChIP HepG2 ENCFF939HTZ 143 bp overlap
ChIP K-562 ENCSR822LBD.RBFOX2.K-562 143 bp overlap
ChIP K-562 GSE120104.RBFOX2.K-562 143 bp overlap
ChIP K562 ENCFF196WTG 143 bp overlap
ChIP K562 ENCFF967GRF 143 bp overlap
RBM25 1 dataset
ChIP K562 ENCFF957ORK 69 bp overlap
RBM39 1 dataset
ChIP HepG2 ENCFF801JUH 109 bp overlap
RELA 2 datasets
ChIP HUVEC-C_TNF-30min GSE121890.RELA.HUVEC-C_TNF-30min 96 bp overlap
ChIP HUVEC-C_TNF_30M GSE34500.RELA.HUVEC-C_TNF_30M 96 bp overlap
REST 1 dataset
ChIP neural cell ENCFF882LXX 143 bp overlap
RUNX1 2 datasets
ChIP ME-1 GSE46044.RUNX1.ME-1 89 bp overlap
ChIP SKNO-1 GSE23730.RUNX1.SKNO-1 82 bp overlap
SAFB 1 dataset
ChIP K562 ENCFF765XSF 121 bp overlap
SALL1 1 dataset
ChIP HepG2 ENCFF426MCK 143 bp overlap
SAP130 1 dataset
ChIP HepG2 ENCFF892EHZ 143 bp overlap
SKIL 1 dataset
ChIP K562 ENCFF560QSF 74 bp overlap
SMAD2_3 1 dataset
ChIP ESC S23-ESC-d0-SMAD2_3-exp1 79 bp overlap
SMAD4 3 datasets
ChIP HepG2 ENCFF615GTE 143 bp overlap
ChIP K562 ENCFF628RBP 143 bp overlap
ChIP K562 ENCFF628RBP 94 bp overlap
SMAD5 1 dataset
ChIP K562 ENCFF941FJJ 80 bp overlap
SOX10 1 dataset
Motif DE_24h DE_24h-SOX10_MA0442.3 6 bp overlap
SOX13 1 dataset
ChIP HepG2 ENCFF062VSQ 143 bp overlap
SOX4 1 dataset
Motif DE_24h DE_24h-SOX4_MA0867.3 8 bp overlap
SOX6 1 dataset
ChIP K562 ENCFF059YCJ 143 bp overlap
SP1 1 dataset
ChIP WTC11 ENCFF688PEU 143 bp overlap
SP2 1 dataset
ChIP HEK293 ENCFF181QXT 143 bp overlap
SP3 1 dataset
Motif DE_24h DE_24h-SP3_MA0746.3 11 bp overlap
SP4 1 dataset
Motif DE_24h DE_24h-SP4_MA0685.2 9 bp overlap
SREBF2 1 dataset
ChIP GM12878 ENCFF670DYX 122 bp overlap
SUPT5H 1 dataset
ChIP K562 ENCFF902PAW 143 bp overlap
Sox11 1 dataset
Motif DE_24h DE_24h-Sox11_MA0869.3 8 bp overlap
Sox17 1 dataset
Motif DE_24h DE_24h-Sox17_MA0078.3 10 bp overlap
Sox5 1 dataset
Motif DE_24h DE_24h-Sox5_MA0087.3 8 bp overlap
Sox7 1 dataset
Motif DE_24h DE_24h-Sox7_MA2095.1 10 bp overlap
TAF1 5 datasets
ChIP GM12878 ENCFF746UKX 130 bp overlap
ChIP H1 ENCFF478SZO 54 bp overlap
ChIP HepG2 ENCFF946IUP 143 bp overlap
ChIP HepG2 ENCFF946IUP 143 bp overlap
ChIP K562 ENCFF491WAE 143 bp overlap
TAF3 1 dataset
ChIP HCT-116 GSE43539.TAF3.HCT-116 99 bp overlap
TBX2 1 dataset
ChIP HepG2 ENCFF811TLA 143 bp overlap
TBX20 1 dataset
Motif DE_24h DE_24h-TBX20_MA0689.1 11 bp overlap
TCF12 1 dataset
ChIP ME-1 GSE46044.TCF12.ME-1 88 bp overlap
TCF7L2 2 datasets
Motif DE_24h DE_24h-TCF7L2_MA0523.2 9 bp overlap
ChIP HepG2 ENCFF510OLG 143 bp overlap
TFAP2B 1 dataset
ChIP SK-N-SH ENCFF869XXQ 98 bp overlap
TFAP4 1 dataset
ChIP K562 ENCFF727PXG 143 bp overlap
TFDP1 1 dataset
ChIP K562 ENCFF584VSB 78 bp overlap
TRIM24 1 dataset
ChIP LNCaP-abl_ETOH GSE69331.TRIM24.LNCaP-abl_ETOH 143 bp overlap
TRIM25 1 dataset
ChIP K562 ENCFF786UTW 143 bp overlap
UBTF 1 dataset
ChIP HepG2 ENCFF424RNN 143 bp overlap
VEZF1 1 dataset
ChIP K562 ENCFF053XDV 133 bp overlap
ZBTB11 1 dataset
ChIP HEK293 ENCFF262GZJ 143 bp overlap
ZBTB17 1 dataset
ChIP HEK293 ENCFF865LIO 143 bp overlap
ZBTB26 2 datasets
ChIP HEK293 ENCFF752POA 143 bp overlap
ChIP HEK293 ENCFF752TCU 143 bp overlap
ZBTB8A 1 dataset
ChIP HEK293 ENCFF303WRD 143 bp overlap
ZEB2 1 dataset
ChIP HEK293 ENCFF847JIE 143 bp overlap
ZFP3 1 dataset
ChIP SK-N-SH ENCFF981MBE 143 bp overlap
ZFX 5 datasets
ChIP HepG2 ENCFF016NZF 143 bp overlap
ChIP K562 ENCFF169LZT 143 bp overlap
ChIP K562 ENCFF169LZT 143 bp overlap
ChIP K562 ENCFF536AJO 143 bp overlap
ChIP K562 ENCFF536AJO 143 bp overlap
ZFY 1 dataset
ChIP HepG2 ENCFF106ELT 143 bp overlap
ZNF148 3 datasets
Motif DE_24h DE_24h-ZNF148_MA1653.2 10 bp overlap
Motif DE_24h DE_24h-ZNF148_MA1653.2 10 bp overlap
ChIP K562 ENCFF352SDL 92 bp overlap
ZNF189 1 dataset
ChIP HEK293 ENCFF638TIB 143 bp overlap
ZNF24 4 datasets
ChIP GM12878 ENCFF688STO 143 bp overlap
ChIP HEK293 ENCFF308WOW 143 bp overlap
ChIP HepG2 ENCFF361LZL 143 bp overlap
ChIP K562 ENCFF877JCX 140 bp overlap
ZNF281 1 dataset
Motif DE_24h DE_24h-ZNF281_MA1630.3 10 bp overlap
ZNF335 1 dataset
ChIP HEK293 ENCFF784SLD 143 bp overlap
ZNF391 1 dataset
ChIP HEK293 ENCFF835SNY 143 bp overlap
ZNF446 1 dataset
ChIP HepG2 ENCFF070XRR 143 bp overlap
ZNF48 1 dataset
ChIP HepG2 ENCFF362CDQ 143 bp overlap
ZNF687 1 dataset
ChIP HepG2 ENCFF653WIX 143 bp overlap
ZNF692 1 dataset
ChIP HEK293 ENCFF040AZE 143 bp overlap
ZNF7 1 dataset
ChIP K562 ENCFF096OHS 143 bp overlap
ZSCAN16 1 dataset
ChIP HEK293 ENCFF533NFT 126 bp overlap
ZSCAN21 2 datasets
ChIP HEK293 ENCFF582WUP 143 bp overlap
ChIP HepG2 ENCFF676MFO 143 bp overlap
ZSCAN30 1 dataset
ChIP HEK293 ENCFF082YBI 131 bp overlap
ZSCAN5A 1 dataset
ChIP HEK293 ENCFF610EME 143 bp overlap
ZXDB 1 dataset
ChIP HEK293 ENCFF835SGA 143 bp overlap
Zfx 2 datasets
Motif DE_24h DE_24h-Zfx_MA0146.3 10 bp overlap
Motif DE_24h DE_24h-Zfx_MA0146.3 10 bp overlap
Huangfu Lab · Publications · Resources · Contact