chr8 : 42,376,919 42,377,769
850 bp 159 TFs 7 linked genes
This 850 bp open chromatin element is linked to 7 target genes and is bound by 159 transcription factors.
Linked Genes
7 genes
Distance
Link type
Gene Expression Dist. to TSS Distance Link type
DKK4 at TSS At TSS Proximity
VDAC3 14.5 kb Distal Multiome
POLB 38.8 kb Distal Multiome
IKBKB 106.0 kb Distal Multiome
SMIM19 164.2 kb Distal Multiome
SLC20A2 164.4 kb Distal Multiome
AP3M2 224.3 kb Distal Multiome+HiCAR
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr8:42,371,919 – 42,382,769
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
159 transcription factors
Source
Cell type
APC 1 dataset
ChIP HCT-116 GSE103894.APC.HCT-116 307 bp overlap
ASCL1 1 dataset
Motif DE_24h DE_24h-ASCL1_MA1631.2 9 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 250 bp overlap
ATF3 1 dataset
ChIP Hep-G2 ENCSR402ZCY.ATF3.Hep-G2 149 bp overlap
BACH1 1 dataset
Motif DE_24h DE_24h-BACH1_MA1633.2 9 bp overlap
BACH2 1 dataset
Motif DE_24h DE_24h-BACH2_MA1101.3 11 bp overlap
BARX1 1 dataset
Motif DE_24h DE_24h-BARX1_MA0875.2 6 bp overlap
BCOR 3 datasets
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 133 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 225 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 344 bp overlap
BRD2 3 datasets
ChIP HCC1806_BAZ2BsiRNA GSE116879.BRD2.HCC1806_BAZ2BsiRNA 292 bp overlap
ChIP HCC1806_NTsiRNA GSE116879.BRD2.HCC1806_NTsiRNA 191 bp overlap
ChIP MV4-11_IBET151_500nM GSE120715.BRD2.MV4-11_IBET151_500nM 206 bp overlap
BRD4 2 datasets
ChIP SW480 GSE110473.BRD4.SW480 269 bp overlap
ChIP SW480_16h_TNF-a GSE110473.BRD4.SW480_16h_TNF-a 397 bp overlap
BSX 1 dataset
Motif DE_24h DE_24h-BSX_MA0876.2 6 bp overlap
CBX8 3 datasets
ChIP K-562 ENCSR000ATW.CBX8.K-562 168 bp overlap
ChIP K-562 ENCSR000ATW.CBX8.K-562 228 bp overlap
ChIP K-562 ENCSR000ATW.CBX8.K-562 157 bp overlap
CDK6 1 dataset
ChIP KB_IL GSE52469.CDK6.KB_IL 166 bp overlap
CDX2 1 dataset
ChIP adult-duodenal-cell GSE115314.CDX2.adult-duodenal-cell 323 bp overlap
CTCF 1 dataset
ChIP islet ERP004003.CTCF.islet 150 bp overlap
CTNNB1 1 dataset
ChIP hiPSC_D2 GSE132532.CTNNB1.hiPSC_D2 367 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF680YXW 148 bp overlap
Crx 1 dataset
Motif DE_24h DE_24h-Crx_MA0467.3 6 bp overlap
DLX1 1 dataset
Motif DE_24h DE_24h-DLX1_MA0879.3 6 bp overlap
DLX6 1 dataset
Motif DE_24h DE_24h-DLX6_MA0882.2 6 bp overlap
DMRT3 1 dataset
Motif DE_24h DE_24h-DMRT3_MA0610.2 7 bp overlap
DMRTC2 1 dataset
Motif DE_24h DE_24h-DMRTC2_MA1479.2 11 bp overlap
Dlx2 1 dataset
Motif DE_24h DE_24h-Dlx2_MA0885.3 8 bp overlap
Dlx3 1 dataset
Motif DE_24h DE_24h-Dlx3_MA0880.2 6 bp overlap
Dlx4 1 dataset
Motif DE_24h DE_24h-Dlx4_MA0881.2 6 bp overlap
Dlx5 1 dataset
Motif DE_24h DE_24h-Dlx5_MA1476.3 8 bp overlap
Dmbx1 1 dataset
Motif DE_24h DE_24h-Dmbx1_MA0883.2 10 bp overlap
EBF3 1 dataset
Motif DE_24h DE_24h-EBF3_MA1637.2 9 bp overlap
ELF1 1 dataset
ChIP A-549 GSE122203.ELF1.A-549 196 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 342 bp overlap
EP300 1 dataset
ChIP osteoblast ENCSR000AUD.EP300.osteoblast 642 bp overlap
ESR1 2 datasets
ChIP Ishikawa_ETV4-KO2_Mili GSE129803.ESR1.Ishikawa_ETV4-KO2_Mili 172 bp overlap
ChIP Ishikawa_siNTC-72h GSE129803.ESR1.Ishikawa_siNTC-72h 253 bp overlap
ETS1 2 datasets
ChIP HUVEC-C_VEGF_12H GSE41166.ETS1.HUVEC-C_VEGF_12H 233 bp overlap
ChIP cardiomyocyte_D2 GSE129986.ETS1.cardiomyocyte_D2 382 bp overlap
ETV1 4 datasets
Motif DE_24h DE_24h-ETV1_MA0761.3 9 bp overlap
ChIP GIST-T1 GSE106624.ETV1.GIST-T1 233 bp overlap
ChIP GIST-T1 GSE80443.ETV1.GIST-T1 81 bp overlap
ChIP GIST-T1 GSE106624.ETV1.GIST-T1 120 bp overlap
EZH2 1 dataset
ChIP prostate-cancer_shEZH2 GSE107780.EZH2.prostate-cancer_shEZH2 196 bp overlap
Ebf2 1 dataset
Motif DE_24h DE_24h-Ebf2_MA1604.2 9 bp overlap
FIGLA 1 dataset
Motif DE_24h DE_24h-FIGLA_MA0820.2 6 bp overlap
FOS 2 datasets
Motif DE_24h DE_24h-FOS_MA0476.2 8 bp overlap
ChIP endothelial_umbilical-vein ENCSR000EVU.FOS.endothelial_umbilical-vein 293 bp overlap
FOSL1 1 dataset
Motif DE_24h DE_24h-FOSL1_MA0477.3 9 bp overlap
FOSL2 4 datasets
Motif DE_24h DE_24h-FOSL2_MA0478.2 10 bp overlap
ChIP NPC_K755R-pos GSE122631.FOSL2.NPC_K755R-pos 200 bp overlap
ChIP NPC_R1159Q GSE122631.FOSL2.NPC_R1159Q 206 bp overlap
ChIP SK-N-SH ENCSR000BVB.FOSL2.SK-N-SH 147 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 588 bp overlap
ChIP DE DE-FOXA2-2 580 bp overlap
FOXP1 1 dataset
ChIP Hep-G2 ENCSR369YUK.FOXP1.Hep-G2 139 bp overlap
FOXP2 2 datasets
Motif DE_24h DE_24h-FOXP2_MA0593.2 9 bp overlap
ChIP PFSK1 ENCSR000BGA.FOXP2.PFSK1 121 bp overlap
Foxl2 1 dataset
Motif DE_24h DE_24h-Foxl2_MA1607.2 10 bp overlap
GATA2 3 datasets
ChIP ME-1_CBFB-MYH11-KD GSE117138.GATA2.ME-1_CBFB-MYH11-KD 196 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 216 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 212 bp overlap
GATA3 3 datasets
ChIP SH-SY5Y ENCFF475HYF 312 bp overlap
ChIP SH-SY5Y ENCSR000EXZ.GATA3.SH-SY5Y 261 bp overlap
ChIP SH-SY5Y GSE65664.GATA3.SH-SY5Y 220 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 546 bp overlap
ChIP DE DE-GATA4-2 473 bp overlap
ChIP foregut GSE117136.GATA4.foregut 267 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 477 bp overlap
GATA6 11 datasets
ChIP AGS GSE51705.GATA6.AGS 132 bp overlap
ChIP DE DE-GATA6-1 607 bp overlap
ChIP DE DE-GATA6-2 422 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 597 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 676 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 589 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 350 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 850 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 643 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 418 bp overlap
ChIP foregut GSE117136.GATA6.foregut 284 bp overlap
GBX2 1 dataset
Motif DE_24h DE_24h-GBX2_MA0890.2 6 bp overlap
GSC 1 dataset
Motif DE_24h DE_24h-GSC_MA0648.2 6 bp overlap
GSC2 1 dataset
Motif DE_24h DE_24h-GSC2_MA0891.2 6 bp overlap
HAND2 1 dataset
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 226 bp overlap
HESX1 1 dataset
Motif DE_24h DE_24h-HESX1_MA0894.2 6 bp overlap
HNF4A 6 datasets
ChIP Caco-2_DIFF GSE23436.HNF4A.Caco-2_DIFF 104 bp overlap
ChIP HCT-116 GSE62890.HNF4A.HCT-116 421 bp overlap
ChIP HCT-116_TCF4 GSE62890.HNF4A.HCT-116_TCF4 450 bp overlap
ChIP HCT-116_TCF4_DOX GSE62890.HNF4A.HCT-116_TCF4_DOX 430 bp overlap
ChIP IM95 GSE114018.HNF4A.IM95 533 bp overlap
ChIP KATO-III GSE114018.HNF4A.KATO-III 178 bp overlap
HOXA7 1 dataset
Motif DE_24h DE_24h-HOXA7_MA1498.3 6 bp overlap
Hnf1A 1 dataset
Motif DE_24h DE_24h-Hnf1A_MA1991.2 10 bp overlap
ISL1 1 dataset
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 221 bp overlap
JDP2 1 dataset
Motif DE_24h DE_24h-JDP2_MA0655.1 9 bp overlap
JUN 5 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 848 bp overlap
ChIP DE_D1 S13-DE-d1-JUN-exp1 578 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 850 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 356 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 850 bp overlap
JUNB 2 datasets
Motif DE_24h DE_24h-JUNB_MA0490.3 9 bp overlap
ChIP MCF10A-Er-Src_EtOH GSE115597.JUNB.MCF10A-Er-Src_EtOH 129 bp overlap
JUND 1 dataset
Motif DE_24h DE_24h-JUND_MA0491.3 9 bp overlap
Jun 1 dataset
Motif DE_24h DE_24h-Jun_MA0489.3 8 bp overlap
KDM1A 1 dataset
ChIP SH-SY5Y_B3 GSE58258.KDM1A.SH-SY5Y_B3 324 bp overlap
KMT2A 1 dataset
ChIP Hep-G2 ENCSR692GFR.KMT2A.Hep-G2 253 bp overlap
LBX2 1 dataset
Motif DE_24h DE_24h-LBX2_MA0699.2 6 bp overlap
LHX2 2 datasets
Motif DE_24h DE_24h-LHX2_MA0700.3 6 bp overlap
ChIP retina_pigment GSE60024.LHX2.retina_pigment 272 bp overlap
Lef1 1 dataset
Motif DE_24h DE_24h-Lef1_MA0768.3 8 bp overlap
MAFB 1 dataset
ChIP islet ERP004003.MAFB.islet 62 bp overlap
MAX 1 dataset
ChIP Hep-G2 ENCSR168DYA.MAX.Hep-G2 133 bp overlap
MCM3 1 dataset
ChIP K-562 ENCSR990AZC.MCM3.K-562 279 bp overlap
MITF 1 dataset
ChIP melanocyte_CTR GSE50681.MITF.melanocyte_CTR 207 bp overlap
MNX1 1 dataset
ChIP Hep-G2 ENCSR108MKR.MNX1.Hep-G2 215 bp overlap
MSX1 1 dataset
Motif DE_24h DE_24h-MSX1_MA0666.3 6 bp overlap
MSX2 1 dataset
Motif DE_24h DE_24h-MSX2_MA0708.3 6 bp overlap
MYBL2 1 dataset
ChIP Hep-G2 ENCSR581KCO.MYBL2.Hep-G2 148 bp overlap
MYNN 1 dataset
ChIP Hep-G2 ENCSR398TMP.MYNN.Hep-G2 181 bp overlap
MYOCD 1 dataset
ChIP A-549 GSE128921.MYOCD.A-549 323 bp overlap
Msx3 1 dataset
Motif DE_24h DE_24h-Msx3_MA0709.2 6 bp overlap
NCOR1 1 dataset
ChIP LS180_125 GSE39277.NCOR1.LS180_125 101 bp overlap
NFE2 1 dataset
Motif DE_24h DE_24h-NFE2_MA0841.2 10 bp overlap
NFIC 1 dataset
ChIP SK-N-SH ENCSR000BSV.NFIC.SK-N-SH 155 bp overlap
NFKB1 1 dataset
ChIP L1236 GSE63736.NFKB1.L1236 195 bp overlap
NIPBL 2 datasets
ChIP hESC_WNT3A GSE64758.NIPBL.hESC_WNT3A 189 bp overlap
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 268 bp overlap
NKX3-1 1 dataset
ChIP islet ERP004003.NKX3-1.islet 575 bp overlap
NR3C1 1 dataset
ChIP A-549 ENCSR000BJR.NR3C1.A-549 113 bp overlap
Nobox 1 dataset
Motif DE_24h DE_24h-Nobox_MA0125.2 6 bp overlap
OTX1 1 dataset
Motif DE_24h DE_24h-OTX1_MA0711.2 6 bp overlap
PAF1 1 dataset
ChIP HCT-116_ab20662 GSE97527.PAF1.HCT-116_ab20662 199 bp overlap
PAX7 1 dataset
ChIP H9_DOX GSE98976.PAX7.H9_DOX 248 bp overlap
PDX1 1 dataset
ChIP hiPSC GSE125768.PDX1.hiPSC 235 bp overlap
PHF8 1 dataset
ChIP Hep-G2 ENCSR604VAE.PHF8.Hep-G2 159 bp overlap
PITX1 1 dataset
Motif DE_24h DE_24h-PITX1_MA0682.3 6 bp overlap
PITX3 1 dataset
Motif DE_24h DE_24h-PITX3_MA0714.2 6 bp overlap
POU2F2 1 dataset
ChIP HNPC_UNDIF GSE74814.POU2F2.HNPC_UNDIF 119 bp overlap
POU5F1 2 datasets
ChIP BG03 GSE21614.POU5F1.BG03 205 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 770 bp overlap
PPARG 1 dataset
Motif DE_24h DE_24h-PPARG_MA0066.2 19 bp overlap
PRDM9 1 dataset
Motif DE_24h DE_24h-PRDM9_MA1723.2 20 bp overlap
PROX1 1 dataset
ChIP SW480 GSE60390.PROX1.SW480 85 bp overlap
PTBP1 2 datasets
ChIP Hep-G2 ENCSR156APP.PTBP1.Hep-G2 176 bp overlap
ChIP Hep-G2 GSE120104.PTBP1.Hep-G2 170 bp overlap
RAX 1 dataset
Motif DE_24h DE_24h-RAX_MA0718.2 6 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 161 bp overlap
RCOR1 1 dataset
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 134 bp overlap
RHOXF1 1 dataset
Motif DE_24h DE_24h-RHOXF1_MA0719.2 6 bp overlap
RNF2 2 datasets
ChIP fibroblast GSE139053.RNF2.fibroblast 55 bp overlap
ChIP fibroblast GSE139053.RNF2.fibroblast 211 bp overlap
SIX2 1 dataset
Motif DE_24h DE_24h-SIX2_MA1119.2 11 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 711 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 648 bp overlap
SMAD2_3 4 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 646 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 653 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 583 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 274 bp overlap
SMAD3 1 dataset
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 284 bp overlap
SMAD4 1 dataset
ChIP Caco-2 GSE112946.SMAD4.Caco-2 145 bp overlap
SMARCA4 6 datasets
ChIP A-549_AG15686 GSE132290.SMARCA4.A-549_AG15686 230 bp overlap
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4 358 bp overlap
ChIP BT-16_Dox GSE71504.SMARCA4.BT-16_Dox 247 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 205 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 293 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 310 bp overlap
SMARCC1 2 datasets
ChIP BT-16_Dox GSE71504.SMARCC1.BT-16_Dox 190 bp overlap
ChIP DE_D1 S15-DE-d1-BAF155-exp1 446 bp overlap
SNAI1 1 dataset
Motif DE_24h DE_24h-SNAI1_MA1558.2 7 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 758 bp overlap
SOX2 1 dataset
ChIP HCC95 GSE137459.SOX2.HCC95 204 bp overlap
SOX8 1 dataset
ChIP RH4_Entinostat-6H GSE116344.SOX8.RH4_Entinostat-6H 216 bp overlap
SP5 1 dataset
Motif DE_24h DE_24h-SP5_MA1965.2 6 bp overlap
SPDEF 1 dataset
Motif DE_24h DE_24h-SPDEF_MA0686.2 10 bp overlap
SS18 1 dataset
ChIP SYO-1 GSE108025.SS18.SYO-1 388 bp overlap
SS18-SSX 1 dataset
ChIP fibroblast_23aa-SSX-Tail GSE139053.SS18-SSX.fibroblast_23aa-SSX-Tail 220 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 328 bp overlap
TBX19 1 dataset
Motif DE_24h DE_24h-TBX19_MA0804.2 17 bp overlap
TCF12 1 dataset
Motif DE_24h DE_24h-TCF12_MA1648.2 7 bp overlap
TCF3 1 dataset
Motif DE_24h DE_24h-TCF3_MA0522.4 7 bp overlap
TCF4 1 dataset
ChIP SK-N-SH ENCFF270OWF 262 bp overlap
TCF7 1 dataset
Motif DE_24h DE_24h-TCF7_MA0769.3 7 bp overlap
TP53 2 datasets
ChIP H9 GSE142050.TP53.H9 344 bp overlap
ChIP hESC_DAMAGED GSE39912.TP53.hESC_DAMAGED 157 bp overlap
TWIST1 2 datasets
ChIP BE2C GSE80151.TWIST1.BE2C 191 bp overlap
ChIP SK-N-BE2-C GSE80151.TWIST1.SK-N-BE2-C 191 bp overlap
Tbx6 1 dataset
Motif DE_24h DE_24h-Tbx6_MA1567.3 9 bp overlap
WT1 2 datasets
ChIP HEK293 ENCFF906HIR 425 bp overlap
ChIP HEK293 ENCSR966PJJ.WT1.HEK293 295 bp overlap
ZBTB17 1 dataset
ChIP HEK293 ENCFF865LIO 559 bp overlap
ZBTB7A 1 dataset
ChIP VCaP_FBS GSE123089.ZBTB7A.VCaP_FBS 227 bp overlap
ZEB1 1 dataset
Motif DE_24h DE_24h-ZEB1_MA0103.4 6 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 134 bp overlap
ZNF10 1 dataset
ChIP HEK293 ENCSR019WUS.ZNF10.HEK293 193 bp overlap
ZNF281 1 dataset
Motif DE_24h DE_24h-ZNF281_MA1630.3 10 bp overlap
ZNF687 1 dataset
ChIP HepG2 ENCFF653WIX 545 bp overlap
ZNF85 1 dataset
Motif DE_24h DE_24h-ZNF85_MA1720.2 12 bp overlap
Zic2 1 dataset
Motif DE_24h DE_24h-Zic2_MA1629.2 9 bp overlap