Enables sequence-specific double-stranded DNA binding activity. Predicted to be involved in male sex differentiation and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within several processes, including adult walking behavior; regulation of odontogenesis of dentin-containing tooth; and ventral spinal cord interneuron specification. Predicted to be located in chromatin. Predicted to be active in nucleus. [provided by Alliance of Genome Resources, Jul 2025]
Transcription factors with Perturb-seq knockdown data for DMRT3. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = DMRT3 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of DMRT3, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr9:967,082–967,245 | 9.4 kb | Proximal (<10kb) | 27 | |
| chr9:967,499–967,742 | 8.9 kb | Proximal (<10kb) | 79 | |
| chr9:967,881–968,196 | 8.5 kb | Proximal (<10kb) | 99 | |
| chr9:969,503–971,218 | 5.4 kb | Proximal (<10kb) | 243 | |
| chr9:971,331–973,231 | 3.4 kb | Proximal (<10kb) | 295 | |
| chr9:976,135–977,943 | at TSS | At TSS | 335 | |
| chr9:981,543–981,915 | 4.9 kb | Proximal (<10kb) | 48 |
Genomic view of the DMRT3 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.