chr9:129,208,459–129,208,914

chr9 : 129,208,459 – 129,208,914

455 bp 108 TFs 8 linked genes

This 455 bp open chromatin element is linked to 8 target genes and is bound by 108 transcription factors.

Linked Genes

8 genes

Gene	Expression	Dist. to TSS	Distance	Link type
PTPA		97.3 kb	Distal	Multiome
LINC01503		125.1 kb	Distal	Multiome
DOLPP1		127.6 kb	Distal	Multiome
MIGA2		172.0 kb	Distal	Multiome
SH3GLB2		180.4 kb	Distal	Multiome
NUP188		261.0 kb	Distal	Multiome
DOLK		261.1 kb	Distal	Multiome
PHYHD1		286.5 kb	Distal	Multiome

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

108 transcription factors

ARID4B 1 dataset

ChIP WTC11 ENCFF441HDK 175 bp overlap

ASH2L 2 datasets

ChIP H1 ENCFF399KAM 87 bp overlap

ChIP WA01 ENCSR850KIP.ASH2L.WA01 329 bp overlap

ChIP WA01 ENCSR000BQU.ATF2.WA01 183 bp overlap

BCOR 3 datasets

ChIP WA01 GSE104690.BCOR.WA01 82 bp overlap

ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 455 bp overlap

ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 420 bp overlap

ChIP HUES-64 GSE104059.BRD1.HUES-64 259 bp overlap

ChIP K-562_dilution-6-100 GSE140325.BRD3.K-562_dilution-6-100 153 bp overlap

BRD4 8 datasets

ChIP HUVEC-C GSE60171.BRD4.HUVEC-C 165 bp overlap

ChIP Jurkat GSE83777.BRD4.Jurkat 431 bp overlap

ChIP KOPT-K1 GSE54379.BRD4.KOPT-K1 455 bp overlap

ChIP KOPT-K1_E GSE54379.BRD4.KOPT-K1_E 183 bp overlap

ChIP OVCAR-3_DMSO GSE77568.BRD4.OVCAR-3_DMSO 101 bp overlap

ChIP T-cell_DMSO GSE138084.BRD4.T-cell_DMSO 153 bp overlap

ChIP hESC GSE33281.BRD4.hESC 96 bp overlap

ChIP hESC GSE33281.BRD4.hESC 201 bp overlap

ChIP K562 ENCFF145YWG 254 bp overlap

ChIP Jurkat GSE83777.CDK7.Jurkat 271 bp overlap

CTBP1 1 dataset

ChIP K-562 ENCSR201NQZ.CTBP1.K-562 117 bp overlap

CTBP2 1 dataset

ChIP WA01 ENCSR000EUO.CTBP2.WA01 188 bp overlap

ChIP K-562 ENCSR731LHZ.E4F1.K-562 290 bp overlap

EGR1 2 datasets

ChIP H1 ENCFF451BLH 113 bp overlap

ChIP WA01 ENCSR000BJA.EGR1.WA01 69 bp overlap

ChIP HEK293 ENCFF336LFH 72 bp overlap

ELF1 4 datasets

ChIP K-562 ENCSR000BMD.ELF1.K-562 432 bp overlap

ChIP K562 ENCFF496AKI 277 bp overlap

ChIP SK-N-MC_SHFLI_96H GSE61944.ELF1.SK-N-MC_SHFLI_96H 340 bp overlap

ChIP SK-N-MC_SHGFP_96H GSE61944.ELF1.SK-N-MC_SHGFP_96H 223 bp overlap

EP300 1 dataset

ChIP WA01 ENCSR000BKK.EP300.WA01 147 bp overlap

ChIP Jurkat GSE49091.ERG.Jurkat 110 bp overlap

ChIP ME-1 GSE46044.ERG.ME-1 205 bp overlap

ChIP SEM GSE117864.ERG.SEM 455 bp overlap

ChIP SKNO-1 GSE23730.ERG.SKNO-1 360 bp overlap

ChIP TSU-1621MT_ATRA GSE60477.ERG.TSU-1621MT_ATRA 158 bp overlap

ETS1 8 datasets

ChIP CTV-1_DSG GSE128835.ETS1.CTV-1_DSG 353 bp overlap

ChIP CTV-1_DSG_SPI1-mut GSE128835.ETS1.CTV-1_DSG_SPI1-mut 391 bp overlap

ChIP SCC-25 GSE109884.ETS1.SCC-25 269 bp overlap

ChIP THP-6_shCtrl GSE138516.ETS1.THP-6_shCtrl 455 bp overlap

ChIP THP-6_shEts1 GSE138516.ETS1.THP-6_shEts1 439 bp overlap

ChIP cardiomyocyte_D0 GSE129986.ETS1.cardiomyocyte_D0 300 bp overlap

ChIP cardiomyocyte_D2 GSE129986.ETS1.cardiomyocyte_D2 455 bp overlap

ChIP hESC ENCSR534VHI.ETS1.hESC 415 bp overlap

ChIP Hep-G2 ENCSR714YZG.ETV4.Hep-G2 132 bp overlap

ChIP WTC11 ENCFF812SCD 327 bp overlap

ChIP H1 ENCFF232NZA 132 bp overlap

FLI1 4 datasets

ChIP CTV-1_DSG GSE128835.FLI1.CTV-1_DSG 320 bp overlap

ChIP CTV-1_DSG_SPI1-mut GSE128835.FLI1.CTV-1_DSG_SPI1-mut 431 bp overlap

ChIP SEM GSE117864.FLI1.SEM 255 bp overlap

ChIP SKNO-1 GSE23730.FLI1.SKNO-1 455 bp overlap

ChIP CD4 GSE116695.FOS.CD4 175 bp overlap

FOXP1 1 dataset

ChIP H9 GSE31006.FOXP1.H9 192 bp overlap

GABPA 3 datasets

ChIP K-562 ENCSR000BLO.GABPA.K-562 228 bp overlap

ChIP K-562 ENCSR290MUH.GABPA.K-562 244 bp overlap

ChIP WA01 ENCSR000BIW.GABPA.WA01 101 bp overlap

GABPB1 2 datasets

ChIP K-562 ENCSR138YYY.GABPB1.K-562 363 bp overlap

ChIP K562 ENCFF015GDS 438 bp overlap

GATA3 1 dataset

ChIP Jurkat GSE76181.GATA3.Jurkat 178 bp overlap

GLIS2 1 dataset

ChIP HCT-116_5FU GSE125927.GLIS2.HCT-116_5FU 340 bp overlap

GLIS3 1 dataset

ChIP H9_plus GSE109562.GLIS3.H9_plus 233 bp overlap

GTF3C2 1 dataset

ChIP H9 GSE94418.GTF3C2.H9 106 bp overlap

HDAC2 1 dataset

ChIP WA01 ENCSR000AVB.HDAC2.WA01 455 bp overlap

HDGF 2 datasets

ChIP K-562 ENCSR563YDA.HDGF.K-562 292 bp overlap

ChIP K-562 ENCSR197ALX.HDGF.K-562 290 bp overlap

HEXIM1 1 dataset

ChIP HCT-116 GSE72622.HEXIM1.HCT-116 196 bp overlap

JARID2 1 dataset

ChIP MRC-5_IPS25_MEG3 GSE48515.JARID2.MRC-5_IPS25_MEG3 212 bp overlap

ChIP CD4 GSE116695.JUNB.CD4 235 bp overlap

KDM1A 3 datasets

ChIP H1 ENCFF696SGD 442 bp overlap

ChIP K-562 GSE117944.KDM1A.K-562 71 bp overlap

ChIP pancreatic-progenitor_PP1 GSE104840.KDM1A.pancreatic-progenitor_PP1 288 bp overlap

KDM3A 1 dataset

ChIP Hep-G2 ENCSR387JKT.KDM3A.Hep-G2 155 bp overlap

KDM4A 2 datasets

ChIP WA01 ENCSR000AVC.KDM4A.WA01 397 bp overlap

ChIP hiPSC_IA12 GSE106870.KDM4A.hiPSC_IA12 221 bp overlap

KDM4B 1 dataset

ChIP K-562 ENCSR642VZY.KDM4B.K-562 144 bp overlap

KDM6B 1 dataset

ChIP CUTLL1 GSE56694.KDM6B.CUTLL1 184 bp overlap

ChIP keratinocyte GSE140991.KLF3.keratinocyte 143 bp overlap

ChIP hiPSC GSE56567.KLF4.hiPSC 237 bp overlap

ChIP GBM1A GSE62211.KLF9.GBM1A 115 bp overlap

KMT2B 1 dataset

ChIP AML_OG86 GSE112074.KMT2B.AML_OG86 332 bp overlap

ChIP Jurkat GSE94391.LMO1.Jurkat 405 bp overlap

ChIP CD4_TH2 GSE72266.MAF.CD4_TH2 267 bp overlap

ChIP K562 ENCFF398VJM 375 bp overlap

ChIP WTC11 ENCFF223QFY 210 bp overlap

ChIP K-562 ENCSR000EFX.MAZ.K-562 210 bp overlap

ChIP K-562 ENCSR000EFX.MAZ.K-562 201 bp overlap

MLLT1 1 dataset

ChIP K-562 ENCSR107GRP.MLLT1.K-562 172 bp overlap

ChIP Jurkat GSE59657.MYB.Jurkat 380 bp overlap

NANOG 3 datasets

ChIP HUES-8 GSE109524.NANOG.HUES-8 347 bp overlap

ChIP WA01 ERP004238.NANOG.WA01 213 bp overlap

ChIP WA09 GSE105028.NANOG.WA09 376 bp overlap

NEUROD1 1 dataset

ChIP K-562 ENCSR986CDX.NEUROD1.K-562 168 bp overlap

NFATC2 4 datasets

ChIP CD4 GSE116695.NFATC2.CD4 455 bp overlap

ChIP CD4_CD28-ab GSE116695.NFATC2.CD4_CD28-ab 455 bp overlap

ChIP CD4_fly-DNA GSE116695.NFATC2.CD4_fly-DNA 455 bp overlap

ChIP CD4_fly-DNA_no-CD28 GSE116695.NFATC2.CD4_fly-DNA_no-CD28 394 bp overlap

NIPBL 3 datasets

ChIP WA09_heat-shock GSE105028.NIPBL.WA09_heat-shock 70 bp overlap

ChIP hESC GSE64758.NIPBL.hESC 182 bp overlap

ChIP hESC_activin GSE64758.NIPBL.hESC_activin 141 bp overlap

NOTCH1 1 dataset

ChIP HPBALL GSE39263.NOTCH1.HPBALL 336 bp overlap

NR2C2 1 dataset

ChIP HepG2 ENCFF944PRH 428 bp overlap

PCGF1 1 dataset

ChIP WA01 GSE104690.PCGF1.WA01 455 bp overlap

PHF8 2 datasets

ChIP H1 ENCFF427UFV 455 bp overlap

ChIP WA01 ENCSR000ATK.PHF8.WA01 174 bp overlap

PKNOX1 2 datasets

ChIP K-562 ENCSR115SMW.PKNOX1.K-562 280 bp overlap

ChIP K562 ENCFF236IUS 321 bp overlap

POLR2A 3 datasets

ChIP GM23338 ENCFF450WCS 140 bp overlap

ChIP GM23338 ENCFF450WCS 218 bp overlap

ChIP spleen ENCFF446ZGT 455 bp overlap

POU5F1 4 datasets

ChIP BG03 GSE21614.POU5F1.BG03 348 bp overlap

ChIP DE_D1 DED1-OCT4_Batch_II 197 bp overlap

ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 299 bp overlap

ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 455 bp overlap

POU5F1_M 1 dataset

ChIP DE_D1 DED1-OCT4-M_Batch_II 451 bp overlap

PRDM14 1 dataset

ChIP primordial-germ-cell-like-cell GSE138674.PRDM14.primordial-germ-cell-like-cell 348 bp overlap

RBBP5 1 dataset

ChIP WA01 ENCSR000AQC.RBBP5.WA01 455 bp overlap

RELA 2 datasets

ChIP FaDu_LPS GSE132018.RELA.FaDu_LPS 66 bp overlap

ChIP MCF-7_IL1b_45m GSE67295.RELA.MCF-7_IL1b_45m 106 bp overlap

ChIP WA09_heat-shock GSE105028.RNF2.WA09_heat-shock 363 bp overlap

RUNX1 2 datasets

ChIP SKH1_10d GSE87283.RUNX1.SKH1_10d 137 bp overlap

ChIP SKH1_RUNX1-EVI1_KD GSE87283.RUNX1.SKH1_RUNX1-EVI1_KD 213 bp overlap

RUNX1T1 1 dataset

ChIP Kasumi-1 GSE115115.RUNX1T1.Kasumi-1 427 bp overlap

RUNX2 1 dataset

ChIP PER-117 GSE151819.RUNX2.PER-117 258 bp overlap

ChIP WA01 GSE104690.RYBP.WA01 170 bp overlap

SALL1 1 dataset

ChIP HepG2 ENCFF426MCK 58 bp overlap

SAP30 1 dataset

ChIP WA01 ENCSR000ATR.SAP30.WA01 455 bp overlap

SIN3A 6 datasets

ChIP H1 ENCFF042ZSL 455 bp overlap

ChIP H1 ENCFF042ZSL 240 bp overlap

ChIP WA01 ENCSR000EBO.SIN3A.WA01 455 bp overlap

ChIP WA01 ENCSR000BIS.SIN3A.WA01 227 bp overlap

ChIP hiPSC_IB12 GSE106870.SIN3A.hiPSC_IB12 322 bp overlap

ChIP hiPSC_IID12 GSE106870.SIN3A.hiPSC_IID12 208 bp overlap

SMAD2-3 1 dataset

ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 378 bp overlap

SMAD2_3 1 dataset

ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 245 bp overlap

SMARCA4 8 datasets

ChIP CTV-1_DSG GSE128835.SMARCA4.CTV-1_DSG 404 bp overlap

ChIP CTV-1_DSG_SPI1-mut GSE128835.SMARCA4.CTV-1_DSG_SPI1-mut 379 bp overlap

ChIP CTV-1_FLAG GSE128835.SMARCA4.CTV-1_FLAG 178 bp overlap

ChIP CTV-1_FLAG_SPI1-mut GSE128835.SMARCA4.CTV-1_FLAG_SPI1-mut 320 bp overlap

ChIP CTV-1_delA GSE128835.SMARCA4.CTV-1_delA 273 bp overlap

ChIP CTV-1_delQ GSE128835.SMARCA4.CTV-1_delQ 265 bp overlap

ChIP J-Lat_GFP-Clone-A72_DMSO GSE100266.SMARCA4.J-Lat_GFP-Clone-A72_DMSO 455 bp overlap

ChIP J-Lat_GFP-Clone-A72_JQ1 GSE100266.SMARCA4.J-Lat_GFP-Clone-A72_JQ1 455 bp overlap

ChIP DKO GSE131606.SMC1.DKO 259 bp overlap

ChIP HEK293 GSE76494.SP1.HEK293 172 bp overlap

ChIP WA01 ENCSR000BIR.SP1.WA01 406 bp overlap

ChIP WTC11 ENCFF688PEU 429 bp overlap

ChIP WTC11 ENCFF688PEU 312 bp overlap

ChIP HEK293 GSE76494.SP2.HEK293 194 bp overlap

ChIP H1 ENCFF473YOB 360 bp overlap

ChIP HEK293 GSE76494.SP4.HEK293 399 bp overlap

ChIP WA01 ENCSR000BQV.SP4.WA01 368 bp overlap

ChIP Hep-G2 ENCSR019NPF.SP5.Hep-G2 148 bp overlap

SPI1 8 datasets

ChIP CTV-1_FLAG_15perc GSE128835.SPI1.CTV-1_FLAG_15perc 327 bp overlap

ChIP CTV-1_delA GSE128835.SPI1.CTV-1_delA 278 bp overlap

ChIP CTV-1_delQ GSE128835.SPI1.CTV-1_delQ 291 bp overlap

ChIP CTV-1_delQA GSE128835.SPI1.CTV-1_delQA 251 bp overlap

ChIP K-562 GSE70482.SPI1.K-562 217 bp overlap

ChIP K-562 ENCSR000BGW.SPI1.K-562 114 bp overlap

ChIP K-562_NABUT GSE74999.SPI1.K-562_NABUT 212 bp overlap

ChIP NB4 GSE128834.SPI1.NB4 171 bp overlap

SUZ12 1 dataset

ChIP WA01 ENCSR000ATS.SUZ12.WA01 73 bp overlap

ChIP WA01 ENCSR000BHO.TAF1.WA01 455 bp overlap

ChIP H1 ENCFF859IIO 377 bp overlap

ChIP K-562 GSE55306.TBP.K-562 153 bp overlap

ChIP WA01 ENCSR000ECB.TBP.WA01 224 bp overlap

ChIP hESC GSE122298.TBP.hESC 201 bp overlap

ChIP hESC_10h GSE122298.TBP.hESC_10h 423 bp overlap

ChIP hESC_2h GSE122298.TBP.hESC_2h 74 bp overlap

ChIP hESC_8h GSE122298.TBP.hESC_8h 110 bp overlap

ChIP hiPSC_WTa_RNase-neg GSE128135.TBP.hiPSC_WTa_RNase-neg 382 bp overlap

ChIP hiPSC_WTb_RNase-pos GSE128135.TBP.hiPSC_WTb_RNase-pos 455 bp overlap

TCF12 1 dataset

ChIP WA01 ENCSR000BIT.TCF12.WA01 55 bp overlap

ChIP NPC GSE154479.TCF3.NPC 263 bp overlap

TFAP2A 1 dataset

ChIP WA09 GSE105081.TFAP2A.WA09 109 bp overlap

TFAP2C 1 dataset

ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 455 bp overlap

TGIF2 1 dataset

ChIP WTC11 ENCFF649SHI 144 bp overlap

TP53 2 datasets

ChIP hESC_DAMAGED GSE39912.TP53.hESC_DAMAGED 226 bp overlap

ChIP hESC_DIFF GSE39912.TP53.hESC_DIFF 299 bp overlap

TP63 5 datasets

ChIP SUIT-2 GSE115461.TP63.SUIT-2 155 bp overlap

ChIP keratinocyte_D0 GSE59824.TP63.keratinocyte_D0 63 bp overlap

ChIP keratinocyte_D2 GSE59824.TP63.keratinocyte_D2 83 bp overlap

ChIP keratinocyte_D4 GSE59824.TP63.keratinocyte_D4 67 bp overlap

ChIP keratinocyte_D7 GSE59824.TP63.keratinocyte_D7 60 bp overlap

TRIM25 1 dataset

ChIP MDA-MB-231 GSE79588.TRIM25.MDA-MB-231 170 bp overlap

ChIP WA01 ENCSR000BIU.USF1.WA01 121 bp overlap

ChIP ALL GSE145549.YY1.ALL 309 bp overlap

ChIP K-562 ENCSR000BMH.YY1.K-562 98 bp overlap

ChIP K-562 ENCSR000BMH.YY1.K-562 98 bp overlap

ChIP K562 ENCFF660QRE 311 bp overlap

ChIP NT2-D1 ENCSR000EXG.YY1.NT2-D1 145 bp overlap

ChIP WA01 ENCSR000BKD.YY1.WA01 132 bp overlap

ChIP WA01 ENCSR000BKD.YY1.WA01 264 bp overlap

ZBTB33 1 dataset

ChIP K-562 ENCSR876GXA.ZBTB33.K-562 163 bp overlap

ZBTB7A 2 datasets

ChIP K-562 GSE103445.ZBTB7A.K-562 210 bp overlap

ChIP K-562 ENCSR000BME.ZBTB7A.K-562 368 bp overlap

ZFHX2 1 dataset

ChIP HEK293 ENCFF167TUA 156 bp overlap

ZFP36 1 dataset

ChIP K-562 ENCSR776CYN.ZFP36.K-562 136 bp overlap

ChIP K562 ENCFF169LZT 455 bp overlap

ZGPAT 1 dataset

ChIP Hep-G2 ENCSR704IGU.ZGPAT.Hep-G2 58 bp overlap

ZNF143 2 datasets

ChIP WA01 ENCSR000EBW.ZNF143.WA01 168 bp overlap

ChIP WTC11 ENCFF249JUK 154 bp overlap

ZNF281 2 datasets

ChIP WTC11 ENCFF551GAV 282 bp overlap

ChIP WTC11 ENCFF551GAV 66 bp overlap

ZNF316 2 datasets

ChIP K-562 ENCSR200JYP.ZNF316.K-562 277 bp overlap

ChIP K562 ENCFF281INV 400 bp overlap

ZNF396 1 dataset

ChIP WTC11 ENCFF776JWJ 301 bp overlap

ZNF687 2 datasets

ChIP HepG2 ENCFF653WIX 455 bp overlap

ChIP HepG2 ENCFF653WIX 455 bp overlap

ZNF750 1 dataset

ChIP keratinocyte_diff GSE57702.ZNF750.keratinocyte_diff 73 bp overlap

ZNF770 7 datasets

ChIP HEK293 ENCFF468FCG 316 bp overlap

ChIP HEK293 ENCSR242BGR.ZNF770.HEK293 68 bp overlap

ChIP HEK293 GSE76494.ZNF770.HEK293 89 bp overlap

ChIP HEK293 ENCSR242BGR.ZNF770.HEK293 284 bp overlap

ChIP HEK293 GSE76494.ZNF770.HEK293 212 bp overlap

ChIP Hep-G2 ENCSR510GKB.ZNF770.Hep-G2 210 bp overlap

ChIP HepG2 ENCFF233UVH 113 bp overlap