chr4 : 108,170,727 108,171,044
317 bp 120 TFs 2 linked genes
This 317 bp open chromatin element is linked to LEF1-AS1 and LEF1 and is bound by 120 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
LEF1-AS1 3.2 kb Proximal Proximity
LEF1 4.0 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:108,165,727 – 108,176,044
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
120 transcription factors
Source
Cell type
AFF1 1 dataset
ChIP SEM_DMSO GSE90762.AFF1.SEM_DMSO 212 bp overlap
ARNT 1 dataset
ChIP SK-MEL-28 GSE85352.ARNT.SK-MEL-28 247 bp overlap
BCL11B 1 dataset
ChIP thymus_CD34neg GSE84677.BCL11B.thymus_CD34neg 114 bp overlap
BCOR 2 datasets
ChIP WA01 GSE104690.BCOR.WA01 308 bp overlap
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 317 bp overlap
BRD4 2 datasets
ChIP CLL_patient3_4h_CpG GSE109411.BRD4.CLL_patient3_4h_CpG 317 bp overlap
ChIP DND41 GSE54379.BRD4.DND41 188 bp overlap
CBX4 1 dataset
ChIP HEK293T GSE53495.CBX4.HEK293T 62 bp overlap
CBX8 1 dataset
ChIP K-562 ENCSR000ATW.CBX8.K-562 136 bp overlap
COMMD3-BMI1,BMI1 1 dataset
ChIP GM12878 ENCFF249AMT 89 bp overlap
CTBP1 2 datasets
ChIP HEK293T ENCFF003PDY 293 bp overlap
ChIP HEK293T ENCSR237TFX.CTBP1.HEK293T 252 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF335XTP 75 bp overlap
EBF1 1 dataset
ChIP NALM-6 GSE126300.EBF1.NALM-6 317 bp overlap
ELF3 1 dataset
ChIP PDAC_KOKLF5 GSE64557.ELF3.PDAC_KOKLF5 131 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 134 bp overlap
EP300 1 dataset
ChIP 697 GSE138031.EP300.697 180 bp overlap
ERG 1 dataset
ChIP Jurkat GSE49091.ERG.Jurkat 174 bp overlap
ETS1 1 dataset
ChIP CTV-1_DSG GSE128835.ETS1.CTV-1_DSG 317 bp overlap
EZH2 12 datasets
ChIP B cell ENCFF803EMO 195 bp overlap
ChIP DOHH2 ENCFF528GDC 99 bp overlap
ChIP GM23248 ENCFF404ZHM 76 bp overlap
ChIP H1 ENCFF232NZA 110 bp overlap
ChIP HCT-116 ENCSR046HGP.EZH2.HCT-116 186 bp overlap
ChIP LNCaP-abl GSE39459.EZH2.LNCaP-abl 317 bp overlap
ChIP THP-1 GSE135024.EZH2.THP-1 212 bp overlap
ChIP dermal-fibroblast_Preneoplastic GSE126396.EZH2.dermal-fibroblast_Preneoplastic 317 bp overlap
ChIP dermal-fibroblast_Transformed GSE126396.EZH2.dermal-fibroblast_Transformed 202 bp overlap
ChIP dermal-fibroblast_Untransformed GSE126396.EZH2.dermal-fibroblast_Untransformed 317 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 71 bp overlap
ChIP neural progenitor cell ENCFF472NFV 289 bp overlap
FEZF1 3 datasets
ChIP HEK293 ENCFF528YED 317 bp overlap
ChIP HEK293 ENCSR827NWO.FEZF1.HEK293 317 bp overlap
ChIP HEK293 GSE76494.FEZF1.HEK293 221 bp overlap
FOXA1 1 dataset
ChIP prostate_P19_T GSE130408.FOXA1.prostate_P19_T 74 bp overlap
GATA6 5 datasets
ChIP DE_D1 S09-DE-d1-GATA6-exp1 284 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 317 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 302 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 317 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 317 bp overlap
GLIS1 2 datasets
ChIP HEK293 ENCFF299RSE 317 bp overlap
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 317 bp overlap
GLIS2 2 datasets
ChIP HEK293 ENCFF446EIF 317 bp overlap
ChIP HEK293 ENCSR535DIA.GLIS2.HEK293 247 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 299 bp overlap
HDAC2 1 dataset
ChIP pre-B-cell GSE107886.HDAC2.pre-B-cell 317 bp overlap
HDGF 1 dataset
ChIP K-562 ENCSR197ALX.HDGF.K-562 317 bp overlap
HNRNPLL 2 datasets
ChIP K562 ENCFF541ZGX 130 bp overlap
ChIP K562 ENCFF598PWW 130 bp overlap
HSF1 1 dataset
ChIP WA09_heat-shock GSE105028.HSF1.WA09_heat-shock 242 bp overlap
IKZF1 2 datasets
ChIP BCR-ABL1_LAX2 GSE58825.IKZF1.BCR-ABL1_LAX2 229 bp overlap
ChIP K-562 ENCSR395HWC.IKZF1.K-562 317 bp overlap
IKZF3 2 datasets
ChIP HEK293 ENCFF518OXG 153 bp overlap
ChIP HEK293 ENCSR304AMN.IKZF3.HEK293 317 bp overlap
JARID2 2 datasets
ChIP MRC-5_IPS25_CTR GSE48515.JARID2.MRC-5_IPS25_CTR 242 bp overlap
ChIP UTEIPS11 GSE48516.JARID2.UTEIPS11 59 bp overlap
JUN 8 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 317 bp overlap
ChIP DE_D1 S13-DE-d1-JUN-exp1 240 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 317 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 317 bp overlap
ChIP DE_D2 S54-DE-d2-JUN-exp2 317 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 208 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 208 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 249 bp overlap
KLF10 2 datasets
ChIP HEK293 ENCFF326EGX 303 bp overlap
ChIP HEK293 ENCSR006GAQ.KLF10.HEK293 242 bp overlap
KMT2A 2 datasets
ChIP KOPN-8 GSE83671.KMT2A.KOPN-8 129 bp overlap
ChIP SEM GSE83671.KMT2A.SEM 222 bp overlap
MAF 1 dataset
ChIP CD4_Th1 GSE72266.MAF.CD4_Th1 279 bp overlap
MAZ 1 dataset
ChIP HEK293 ENCFF994GSG 317 bp overlap
MCM3 1 dataset
ChIP K-562 ENCSR990AZC.MCM3.K-562 146 bp overlap
MED 1 dataset
ChIP SEM GSE83671.MED.SEM 276 bp overlap
MED1 1 dataset
ChIP Jurkat GSE59657.MED1.Jurkat 139 bp overlap
MTA2 1 dataset
ChIP pre-B-cell GSE107886.MTA2.pre-B-cell 317 bp overlap
MYB 3 datasets
ChIP Jurkat GSE59657.MYB.Jurkat 303 bp overlap
ChIP Loucy GSE94000.MYB.Loucy 311 bp overlap
ChIP SEM GSE117864.MYB.SEM 212 bp overlap
MZF1 2 datasets
ChIP HEK293 ENCFF683ZWN 317 bp overlap
ChIP HEK293 ENCSR298QUH.MZF1.HEK293 269 bp overlap
NANOG 6 datasets
ChIP WA01 ERP004238.NANOG.WA01 197 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 160 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 262 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 282 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 317 bp overlap
ChIP hESC GSE18292.NANOG.hESC 162 bp overlap
NCOR1 1 dataset
ChIP K-562 ENCSR798ILC.NCOR1.K-562 189 bp overlap
NOTCH1 2 datasets
ChIP CUTLL1 GSE29600.NOTCH1.CUTLL1 98 bp overlap
ChIP HPBALL GSE39263.NOTCH1.HPBALL 316 bp overlap
OSR2 3 datasets
ChIP HEK293 ENCFF875BDB 146 bp overlap
ChIP HEK293 ENCSR324LTM.OSR2.HEK293 251 bp overlap
ChIP HEK293 GSE76494.OSR2.HEK293 153 bp overlap
PATZ1 2 datasets
ChIP HEK293 ENCFF016MNJ 317 bp overlap
ChIP HEK293 ENCSR966ULI.PATZ1.HEK293 317 bp overlap
PAX5 1 dataset
ChIP NALM-6 GSE126300.PAX5.NALM-6 242 bp overlap
PCGF2 1 dataset
ChIP NT2-D1 GSE101538.PCGF2.NT2-D1 317 bp overlap
PHF19 1 dataset
ChIP DU145_CTR GSE135623.PHF19.DU145_CTR 317 bp overlap
PHIP 1 dataset
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 226 bp overlap
POLR2A 2 datasets
ChIP SK-N-MC ENCFF088IVG 317 bp overlap
ChIP sigmoid colon ENCFF725QFT 66 bp overlap
POU2F2 1 dataset
ChIP pre-B-cell GSE107886.POU2F2.pre-B-cell 201 bp overlap
PRDM4 2 datasets
ChIP HEK293 ENCFF069PHD 269 bp overlap
ChIP HEK293 ENCSR443MVV.PRDM4.HEK293 317 bp overlap
PRDM6 3 datasets
ChIP HEK293 ENCFF283AJL 317 bp overlap
ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 317 bp overlap
ChIP HEK293 GSE76494.PRDM6.HEK293 301 bp overlap
RARA 2 datasets
ChIP hiPSC_D2 GSE132532.RARA.hiPSC_D2 212 bp overlap
ChIP hiPSC_D3 GSE109172.RARA.hiPSC_D3 210 bp overlap
RBPJ 2 datasets
ChIP CUTLL1 GSE29600.RBPJ.CUTLL1 146 bp overlap
ChIP THP-6_shCtrl GSE138516.RBPJ.THP-6_shCtrl 300 bp overlap
REST 1 dataset
ChIP HEK293 ENCSR896UBV.REST.HEK293 157 bp overlap
RNF2 3 datasets
ChIP H1 ENCFF239FFS 317 bp overlap
ChIP HMELBRAF_OVERTUMOR GSE51929.RNF2.HMELBRAF_OVERTUMOR 211 bp overlap
ChIP WA01 GSE104690.RNF2.WA01 317 bp overlap
RUNX1 2 datasets
ChIP 697 GSE138031.RUNX1.697 257 bp overlap
ChIP NALM-6 GSE126300.RUNX1.NALM-6 317 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 317 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 148 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 312 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 317 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 300 bp overlap
SMARCA4 6 datasets
ChIP CTV-1_DSG GSE128835.SMARCA4.CTV-1_DSG 281 bp overlap
ChIP CTV-1_DSG_SPI1-mut GSE128835.SMARCA4.CTV-1_DSG_SPI1-mut 196 bp overlap
ChIP SYO-1 GSE108025.SMARCA4.SYO-1 65 bp overlap
ChIP WA09_heat-shock GSE105028.SMARCA4.WA09_heat-shock 254 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 237 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 277 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 317 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 170 bp overlap
SMARCC1 6 datasets
ChIP Aska-SS GSE108025.SMARCC1.Aska-SS 211 bp overlap
ChIP DE_D1 S15-DE-d1-BAF155-exp1 214 bp overlap
ChIP SYO-1_shCt GSE139053.SMARCC1.SYO-1_shCt 317 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.SMARCC1.SYO-1_shRING1A-B 311 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 230 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 213 bp overlap
SOX2 1 dataset
ChIP HNSC GSE69479.SOX2.HNSC 206 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 265 bp overlap
SP2 2 datasets
ChIP HEK293 ENCFF181QXT 164 bp overlap
ChIP HEK293 ENCSR807LQP.SP2.HEK293 216 bp overlap
SP7 1 dataset
ChIP HEK293 ENCSR468IJT.SP7.HEK293 317 bp overlap
SPI1 1 dataset
ChIP CTV-1_delQ GSE128835.SPI1.CTV-1_delQ 228 bp overlap
SS18 5 datasets
ChIP Aska-SS GSE108025.SS18.Aska-SS 201 bp overlap
ChIP Aska-SS_BAF47KO1 GSE108025.SS18.Aska-SS_BAF47KO1 113 bp overlap
ChIP SYO-1 GSE108025.SS18.SYO-1 317 bp overlap
ChIP SYO-1_shCt GSE139053.SS18.SYO-1_shCt 317 bp overlap
ChIP SYO-1_shSSX GSE108025.SS18.SYO-1_shSSX 171 bp overlap
SUZ12 3 datasets
ChIP GM12878 ENCFF498QAM 286 bp overlap
ChIP GM12878 ENCSR091BOQ.SUZ12.GM12878 247 bp overlap
ChIP H1 ENCFF881NFR 88 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 125 bp overlap
TCF7L2 3 datasets
ChIP HEK293 ENCFF513JQN 317 bp overlap
ChIP HEK293 ENCFF513JQN 132 bp overlap
ChIP HEK293 ENCSR000EUY.TCF7L2.HEK293 317 bp overlap
TFAP2C 2 datasets
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 317 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 257 bp overlap
TP53 1 dataset
ChIP SW480_0h_TNFa GSE102796.TP53.SW480_0h_TNFa 317 bp overlap
TRIM28 3 datasets
ChIP HEK293 ENCFF265CEM 317 bp overlap
ChIP HEK293 ENCSR618HNF.TRIM28.HEK293 315 bp overlap
ChIP U2OS ENCSR000EYC.TRIM28.U2OS 315 bp overlap
WT1 1 dataset
ChIP HEK293 ENCSR966PJJ.WT1.HEK293 317 bp overlap
XRCC5 2 datasets
ChIP K-562 GSE120104.XRCC5.K-562 153 bp overlap
ChIP K-562 ENCSR506KWJ.XRCC5.K-562 138 bp overlap
YY1 3 datasets
ChIP ALL GSE145549.YY1.ALL 124 bp overlap
ChIP Hep-G2_NC GSE120104.YY1.Hep-G2_NC 317 bp overlap
ChIP Hep-G2_RBM25-KD GSE120104.YY1.Hep-G2_RBM25-KD 317 bp overlap
ZBTB12 2 datasets
ChIP HEK293 ENCFF963HPT 248 bp overlap
ChIP HEK293 ENCSR543KOA.ZBTB12.HEK293 225 bp overlap
ZBTB17 1 dataset
ChIP HEK293 ENCFF865LIO 287 bp overlap
ZBTB20 2 datasets
ChIP HEK293 ENCFF524ADK 317 bp overlap
ChIP HEK293 ENCFF524ADK 317 bp overlap
ZBTB26 1 dataset
ChIP HEK293 GSE76494.ZBTB26.HEK293 109 bp overlap
ZBTB42 1 dataset
ChIP HEK293 GSE76494.ZBTB42.HEK293 187 bp overlap
ZBTB48 2 datasets
ChIP HEK293 ENCFF809BPK 185 bp overlap
ChIP HEK293 ENCSR781EQJ.ZBTB48.HEK293 197 bp overlap
ZBTB6 2 datasets
ChIP HEK293 ENCFF881ECZ 228 bp overlap
ChIP HEK293 GSE76494.ZBTB6.HEK293 112 bp overlap
ZBTB7A 1 dataset
ChIP K-562 GSE103445.ZBTB7A.K-562 174 bp overlap
ZEB2 1 dataset
ChIP HEK293 ENCSR417VWF.ZEB2.HEK293 317 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 210 bp overlap
ZNF18 3 datasets
ChIP HEK293 ENCFF066NGR 317 bp overlap
ChIP HEK293 ENCSR977HTH.ZNF18.HEK293 317 bp overlap
ChIP HEK293 GSE76494.ZNF18.HEK293 281 bp overlap
ZNF2 1 dataset
ChIP HEK293 ENCSR011CKE.ZNF2.HEK293 232 bp overlap
ZNF24 2 datasets
ChIP HEK293 ENCSR984MDV.ZNF24.HEK293 312 bp overlap
ChIP K-562 ENCSR695EQB.ZNF24.K-562 255 bp overlap
ZNF263 2 datasets
ChIP HEK293 ENCFF336CWQ 317 bp overlap
ChIP HEK293 ENCFF336CWQ 292 bp overlap
ZNF281 2 datasets
ChIP HEK293 GSE76494.ZNF281.HEK293 164 bp overlap
ChIP K562 ENCFF594VNM 317 bp overlap
ZNF341 3 datasets
ChIP HEK293 ENCFF944VMC 305 bp overlap
ChIP HEK293 ENCSR185FOY.ZNF341.HEK293 317 bp overlap
ChIP HEK293 GSE76494.ZNF341.HEK293 227 bp overlap
ZNF35 1 dataset
ChIP HEK293 GSE76494.ZNF35.HEK293 162 bp overlap
ZNF398 2 datasets
ChIP HEK293 ENCFF184XEW 302 bp overlap
ChIP HEK293 ENCSR676ZEF.ZNF398.HEK293 260 bp overlap
ZNF449 1 dataset
ChIP HEK293 ENCFF764ZIC 317 bp overlap
ZNF467 1 dataset
ChIP HEK293 GSE76494.ZNF467.HEK293 153 bp overlap
ZNF534 1 dataset
ChIP HEK293T GSE78099.ZNF534.HEK293T 119 bp overlap
ZNF561 2 datasets
ChIP HEK293 ENCFF399XKF 317 bp overlap
ChIP HEK293 ENCSR125ULS.ZNF561.HEK293 234 bp overlap
ZNF76 2 datasets
ChIP HEK293 ENCFF374TCG 272 bp overlap
ChIP HEK293 ENCSR072LQF.ZNF76.HEK293 187 bp overlap
ZNF778 1 dataset
ChIP HEK293 GSE76494.ZNF778.HEK293 185 bp overlap
ZNF843 2 datasets
ChIP HEK293 ENCFF241QRH 317 bp overlap
ChIP HEK293 ENCSR502KPJ.ZNF843.HEK293 278 bp overlap
ZSCAN30 2 datasets
ChIP HEK293 ENCFF082YBI 278 bp overlap
ChIP HEK293 ENCSR768VNZ.ZSCAN30.HEK293 168 bp overlap