chr3 : 127,227,111 – 127,227,514
403 bp 130 TFs 2 linked genes
This 403 bp open chromatin element is linked to ENSG00000290035 and ENSG00000289641 and is bound by 130 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
ENSG00000290035 at TSS At TSS Proximity
ENSG00000289641 at TSS At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:127,222,111 – 127,232,514
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
130 transcription factors
Source
Cell type
AHR 1 dataset
ChIP MCF-7_TCDD_45min GSE90550.AHR.MCF-7_TCDD_45min 214 bp overlap
ARNT::HIF1A 1 dataset
Motif DE_24h DE_24h-ARNTHIF1A_MA0259.2 5 bp overlap
BHLHE40 1 dataset
ChIP GM12878 ENCSR987MTA.BHLHE40.GM12878 186 bp overlap
BRD2 6 datasets
ChIP MDA-MB-231_BAZ2AsiRNA GSE116879.BRD2.MDA-MB-231_BAZ2AsiRNA 152 bp overlap
ChIP SK-MEL-147 GSE94488.BRD2.SK-MEL-147 117 bp overlap
ChIP SUM159PT_DMSO GSE116879.BRD2.SUM159PT_DMSO 151 bp overlap
ChIP SUM159PT_JQ1_MGSK2801 GSE116879.BRD2.SUM159PT_JQ1_MGSK2801 372 bp overlap
ChIP SUM159PT_MGSK2801 GSE116879.BRD2.SUM159PT_MGSK2801 117 bp overlap
ChIP THP-1_iBET GSE138084.BRD2.THP-1_iBET 403 bp overlap
BRD4 24 datasets
ChIP 402-91 GSE111253.BRD4.402-91 257 bp overlap
ChIP Jurkat GSE83777.BRD4.Jurkat 403 bp overlap
ChIP KOPT-K1_E GSE54379.BRD4.KOPT-K1_E 69 bp overlap
ChIP MCF-7_ARID1A-KO GSE123284.BRD4.MCF-7_ARID1A-KO 196 bp overlap
ChIP MDA-MB-231_JQ1 GSE116879.BRD4.MDA-MB-231_JQ1 151 bp overlap
ChIP MDA-MB-231_JQ1_MGSK2801 GSE116879.BRD4.MDA-MB-231_JQ1_MGSK2801 172 bp overlap
ChIP MDA-MB-231_JQ1_MGSK2801_rDNA GSE116879.BRD4.MDA-MB-231_JQ1_MGSK2801_rDNA 172 bp overlap
ChIP MDA-MB-231_JQ1_rDNA GSE116879.BRD4.MDA-MB-231_JQ1_rDNA 151 bp overlap
ChIP SUM159PT_100nMtrametinib300nMJQ1_24h GSE87418.BRD4.SUM159PT_100nMtrametinib300nMJQ1_24h 136 bp overlap
ChIP SUM159PT_100nMtrametinib_24h GSE87418.BRD4.SUM159PT_100nMtrametinib_24h 403 bp overlap
ChIP SUM159PT_100nMtrametinib_72h GSE87418.BRD4.SUM159PT_100nMtrametinib_72h 159 bp overlap
ChIP SUM159PT_100nMtrametinib_8h GSE87418.BRD4.SUM159PT_100nMtrametinib_8h 83 bp overlap
ChIP SUM159PT_DMSO_24h GSE87418.BRD4.SUM159PT_DMSO_24h 359 bp overlap
ChIP SUM159PT_DMSO_48h GSE87418.BRD4.SUM159PT_DMSO_48h 329 bp overlap
ChIP SUM159PT_DMSO_72h GSE87418.BRD4.SUM159PT_DMSO_72h 241 bp overlap
ChIP SUM159PT_DMSO_8h GSE87418.BRD4.SUM159PT_DMSO_8h 251 bp overlap
ChIP SUM159PT_Dox_48h GSE87418.BRD4.SUM159PT_Dox_48h 336 bp overlap
ChIP SUM159PT_KO GSE131097.BRD4.SUM159PT_KO 401 bp overlap
ChIP SUM159PT_scramble GSE131097.BRD4.SUM159PT_scramble 290 bp overlap
ChIP SUM159PT_shMYC_DMSO_48h GSE87418.BRD4.SUM159PT_shMYC_DMSO_48h 233 bp overlap
ChIP SUM159PT_shMYC_dox_48h GSE87418.BRD4.SUM159PT_shMYC_dox_48h 176 bp overlap
ChIP SW480 GSE73319.BRD4.SW480 96 bp overlap
ChIP hESC GSE33281.BRD4.hESC 61 bp overlap
ChIP keratinocyte GSE140992.BRD4.keratinocyte 403 bp overlap
BRF1 1 dataset
ChIP H9 GSE94418.BRF1.H9 149 bp overlap
CDK7 1 dataset
ChIP Jurkat GSE83777.CDK7.Jurkat 145 bp overlap
CDK8 1 dataset
ChIP SW480 GSE53602.CDK8.SW480 246 bp overlap
CDKN1B 1 dataset
ChIP MDA-MB-231_p27CK-DD GSE112444.CDKN1B.MDA-MB-231_p27CK-DD 403 bp overlap
CHD2 1 dataset
ChIP HeLa-S3 ENCSR000ECP.CHD2.HeLa-S3 226 bp overlap
CREB1 1 dataset
ChIP Hep-G2 ENCSR000BVL.CREB1.Hep-G2 104 bp overlap
CREBBP 2 datasets
ChIP keratinocyte GSE140991.CREBBP.keratinocyte 200 bp overlap
ChIP keratinocyte_KLF3i GSE140991.CREBBP.keratinocyte_KLF3i 84 bp overlap
CREBBP_M768 1 dataset
ChIP NCI-H3396_E2 GSE32349.CREBBP_M768.NCI-H3396_E2 96 bp overlap
CTCF 28 datasets
ChIP A-549 ENCSR000DNA.CTCF.A-549 117 bp overlap
ChIP HCT-116 GSE131606.CTCF.HCT-116 101 bp overlap
ChIP HCT-116_RAD21-mAC GSE104888.CTCF.HCT-116_RAD21-mAC 163 bp overlap
ChIP HCT116 ENCFF209YMI 187 bp overlap
ChIP KB_5Z GSE134435.CTCF.KB_5Z 113 bp overlap
ChIP MCF-7 ENCFF198DQX 162 bp overlap
ChIP MCF-7 ENCFF414SZG 144 bp overlap
ChIP MCF-7 ENCFF424NQR 155 bp overlap
ChIP MCF-7 ENCFF494VXA 162 bp overlap
ChIP MCF-7 ENCFF844STM 155 bp overlap
ChIP MCF-7 ENCFF954TUV 147 bp overlap
ChIP MCF-7 ENCSR000DWH.CTCF.MCF-7 67 bp overlap
ChIP MCF-7 ERP000380.CTCF.MCF-7 79 bp overlap
ChIP MM1-S GSE43743.CTCF.MM1-S 148 bp overlap
ChIP SUM159 GSE46055.CTCF.SUM159 111 bp overlap
ChIP THP-1_PMA_Dex-0h GSE103477.CTCF.THP-1_PMA_Dex-0h 100 bp overlap
ChIP THP-1_Pam3csk-000m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-000m-Flavo-000m 135 bp overlap
ChIP THP-1_Pam3csk-000m-Flavo-240m GSE103477.CTCF.THP-1_Pam3csk-000m-Flavo-240m 122 bp overlap
ChIP THP-1_Pam3csk-025m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-025m-Flavo-000m 141 bp overlap
ChIP THP-1_Pam3csk-045m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-045m-Flavo-000m 126 bp overlap
ChIP THP-1_Pam3csk-060m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-060m-Flavo-000m 95 bp overlap
ChIP THP-1_Pam3csk-150m-Flavo-030m GSE103477.CTCF.THP-1_Pam3csk-150m-Flavo-030m 116 bp overlap
ChIP THP-1_Pam3csk-180m-Flavo-060m GSE103477.CTCF.THP-1_Pam3csk-180m-Flavo-060m 69 bp overlap
ChIP THP-1_Pam3csk-360m-Flavo-240m GSE103477.CTCF.THP-1_Pam3csk-360m-Flavo-240m 109 bp overlap
ChIP THP-1_macrophage_PMA GSE96800.CTCF.THP-1_macrophage_PMA 218 bp overlap
ChIP THP-1_siCtrl-NS1-Pam3csk-0h GSE103477.CTCF.THP-1_siCtrl-NS1-Pam3csk-0h 112 bp overlap
ChIP WERI-Rb-1 ENCFF349QKF 159 bp overlap
ChIP keratinocyte ENCSR000DWX.CTCF.keratinocyte 127 bp overlap
CTCFL 1 dataset
ChIP FT282 GSE131931.CTCFL.FT282 114 bp overlap
E2F1 1 dataset
ChIP MDA-MB-231 GSE95303.E2F1.MDA-MB-231 403 bp overlap
EGR1 5 datasets
ChIP GM12878 ENCFF092DJY 211 bp overlap
ChIP GM12878 ENCSR000BMQ.EGR1.GM12878 112 bp overlap
ChIP HCT-116 ENCSR000BRZ.EGR1.HCT-116 140 bp overlap
ChIP HCT116 ENCFF456NPQ 380 bp overlap
ChIP Hep-G2 ENCSR026GSW.EGR1.Hep-G2 177 bp overlap
ELF1 2 datasets
ChIP GM12878 ENCSR000BMB.ELF1.GM12878 168 bp overlap
ChIP MCF-7 ENCFF305BNP 357 bp overlap
EP300 1 dataset
ChIP MCF-7 GSE128445.EP300.MCF-7 212 bp overlap
ERG 1 dataset
ChIP ME-1 GSE46044.ERG.ME-1 122 bp overlap
ESR1 38 datasets
ChIP Ishikawa_ETV4-OE GSE129803.ESR1.Ishikawa_ETV4-OE 170 bp overlap
ChIP Ishikawa_siETV4-72h GSE129803.ESR1.Ishikawa_siETV4-72h 115 bp overlap
ChIP MCF-7 GSE48930.ESR1.MCF-7 149 bp overlap
ChIP MCF-7 GSE128445.ESR1.MCF-7 205 bp overlap
ChIP MCF-7_ARID1A-KO GSE123284.ESR1.MCF-7_ARID1A-KO 240 bp overlap
ChIP MCF-7_ARID1A-KO_4-OHT GSE123284.ESR1.MCF-7_ARID1A-KO_4-OHT 403 bp overlap
ChIP MCF-7_ARID1A-KO_4-OHT_clone14 GSE123284.ESR1.MCF-7_ARID1A-KO_4-OHT_clone14 155 bp overlap
ChIP MCF-7_ARID1A-KO_clone14 GSE123284.ESR1.MCF-7_ARID1A-KO_clone14 272 bp overlap
ChIP MCF-7_DMSO GSE125594.ESR1.MCF-7_DMSO 242 bp overlap
ChIP MCF-7_E2 ERP000209.ESR1.MCF-7_E2 136 bp overlap
ChIP MCF-7_E2 GSE86538.ESR1.MCF-7_E2 113 bp overlap
ChIP MCF-7_E2-40min-ERalpha GSE94023.ESR1.MCF-7_E2-40min-ERalpha 78 bp overlap
ChIP MCF-7_E2-5min-ERalpha GSE94023.ESR1.MCF-7_E2-5min-ERalpha 91 bp overlap
ChIP MCF-7_E2_45m GSE67295.ESR1.MCF-7_E2_45m 134 bp overlap
ChIP MCF-7_SHCTR_E2_TNF GSE59530.ESR1.MCF-7_SHCTR_E2_TNF 125 bp overlap
ChIP MCF-7_aldosterone GSE99626.ESR1.MCF-7_aldosterone 212 bp overlap
ChIP MCF-7_estradiol-Dex_4h GSE99626.ESR1.MCF-7_estradiol-Dex_4h 159 bp overlap
ChIP MCF-7_jc5849 GSE126004.ESR1.MCF-7_jc5849 378 bp overlap
ChIP MCF-7_jc5850 GSE126004.ESR1.MCF-7_jc5850 314 bp overlap
ChIP MCF-7_jc5852 GSE126004.ESR1.MCF-7_jc5852 394 bp overlap
ChIP MCF-7_jc5853 GSE126004.ESR1.MCF-7_jc5853 403 bp overlap
ChIP MCF-7_jc5854 GSE126004.ESR1.MCF-7_jc5854 279 bp overlap
ChIP MCF-7_jc5855 GSE126004.ESR1.MCF-7_jc5855 373 bp overlap
ChIP MCF-7_jc5856 GSE126004.ESR1.MCF-7_jc5856 259 bp overlap
ChIP MCF-7_parental GSE123284.ESR1.MCF-7_parental 213 bp overlap
ChIP MCF-7_parental_4-hydroxytamoxifen GSE123284.ESR1.MCF-7_parental_4-hydroxytamoxifen 306 bp overlap
ChIP MCF-7_shYAP1 GSE125594.ESR1.MCF-7_shYAP1 180 bp overlap
ChIP MDA-MB-134-VI_E2 GSE109103.ESR1.MDA-MB-134-VI_E2 141 bp overlap
ChIP MDA-MB-134-VI_E2 GSE109103.ESR1.MDA-MB-134-VI_E2 100 bp overlap
ChIP MDA-MB-134-VI_FI GSE109103.ESR1.MDA-MB-134-VI_FI 117 bp overlap
ChIP MDA-MB-231_45min GSE95121.ESR1.MDA-MB-231_45min 139 bp overlap
ChIP MDA-MB-231_LQ_45min GSE95121.ESR1.MDA-MB-231_LQ_45min 403 bp overlap
ChIP T-47D_siFOXA1-IL6 GSE126004.ESR1.T-47D_siFOXA1-IL6 227 bp overlap
ChIP T-47D_siFOXA1-Veh GSE126004.ESR1.T-47D_siFOXA1-Veh 171 bp overlap
ChIP U2OS_100nM-E2 GSE151039.ESR1.U2OS_100nM-E2 403 bp overlap
ChIP U2OS_10nM-E2 GSE151039.ESR1.U2OS_10nM-E2 403 bp overlap
ChIP U2OS_10nM-E2-B GSE151039.ESR1.U2OS_10nM-E2-B 403 bp overlap
ChIP U2OS_E2 GSE26110.ESR1.U2OS_E2 403 bp overlap
ESR1_D538G 1 dataset
ChIP MCF-7_dox_E2 GSE94493.ESR1_D538G.MCF-7_dox_E2 196 bp overlap
ESR1_Y537N 2 datasets
ChIP MCF-7_dox GSE94493.ESR1_Y537N.MCF-7_dox 160 bp overlap
ChIP MCF-7_dox_E2 GSE94493.ESR1_Y537N.MCF-7_dox_E2 162 bp overlap
ESR1_Y537S 2 datasets
ChIP MCF-7_E2 GSE94493.ESR1_Y537S.MCF-7_E2 403 bp overlap
ChIP MCF-7_dox GSE94493.ESR1_Y537S.MCF-7_dox 166 bp overlap
ESR2 1 dataset
ChIP MDA-MB-231_estradiol GSE108979.ESR2.MDA-MB-231_estradiol 244 bp overlap
ESRRA 1 dataset
ChIP SK-BR-3_HRG GSE81651.ESRRA.SK-BR-3_HRG 249 bp overlap
ETS1 5 datasets
ChIP CTV-1_DSG GSE128835.ETS1.CTV-1_DSG 395 bp overlap
ChIP CTV-1_DSG_SPI1-mut GSE128835.ETS1.CTV-1_DSG_SPI1-mut 178 bp overlap
ChIP SCC-25 GSE109884.ETS1.SCC-25 214 bp overlap
ChIP cardiomyocyte_D0 GSE129986.ETS1.cardiomyocyte_D0 147 bp overlap
ChIP cardiomyocyte_D0 GSE129986.ETS1.cardiomyocyte_D0 217 bp overlap
ETV1 2 datasets
Motif DE_24h DE_24h-ETV1_MA0761.3 9 bp overlap
Motif DE_24h DE_24h-ETV1_MA0761.3 9 bp overlap
ETV2 1 dataset
ChIP induced-endothelial-cell_Veh GSE123906.ETV2.induced-endothelial-cell_Veh 72 bp overlap
ETV5::DRGX 1 dataset
Motif DE_24h DE_24h-ETV5DRGX_MA1944.2 12 bp overlap
FLI1 1 dataset
ChIP CTV-1_DSG_SPI1-mut GSE128835.FLI1.CTV-1_DSG_SPI1-mut 115 bp overlap
FLI1::DRGX 1 dataset
Motif DE_24h DE_24h-FLI1DRGX_MA1949.2 14 bp overlap
FOS 1 dataset
ChIP HCT-116_A7A GSE152144.FOS.HCT-116_A7A 186 bp overlap
GABPA 1 dataset
ChIP HepG2 ENCFF180FFY 403 bp overlap
GABPB1 1 dataset
ChIP HepG2 ENCFF315AWN 403 bp overlap
GATA3 1 dataset
ChIP Jurkat GSE76181.GATA3.Jurkat 198 bp overlap
HDAC1 1 dataset
ChIP MCF-7_parental_4-hydroxytamoxifen GSE123284.HDAC1.MCF-7_parental_4-hydroxytamoxifen 378 bp overlap
HDAC2 1 dataset
ChIP WA01 ENCSR000AVB.HDAC2.WA01 205 bp overlap
HEXIM1 1 dataset
ChIP HCT-116 GSE72622.HEXIM1.HCT-116 170 bp overlap
HNF4A 1 dataset
ChIP HCT-116 GSE62890.HNF4A.HCT-116 167 bp overlap
HNRNPK 6 datasets
ChIP Hep-G2 ENCSR519QAA.HNRNPK.Hep-G2 224 bp overlap
ChIP Hep-G2 GSE120104.HNRNPK.Hep-G2 284 bp overlap
ChIP HepG2 ENCFF493GNS 172 bp overlap
ChIP HepG2 ENCFF826MXP 168 bp overlap
ChIP K-562 GSE120104.HNRNPK.K-562 157 bp overlap
ChIP K-562 ENCSR014RCS.HNRNPK.K-562 157 bp overlap
HOXB2::ELK1 1 dataset
Motif DE_24h DE_24h-HOXB2ELK1_MA1957.1 14 bp overlap
IKZF2 2 datasets
Motif DE_24h DE_24h-IKZF2_MA2326.1 6 bp overlap
Motif DE_24h DE_24h-IKZF2_MA2326.1 6 bp overlap
Ikzf3 2 datasets
Motif DE_24h DE_24h-Ikzf3_MA1992.2 9 bp overlap
Motif DE_24h DE_24h-Ikzf3_MA1992.2 9 bp overlap
JMJD1C 3 datasets
ChIP HL-60 GSE63484.JMJD1C.HL-60 99 bp overlap
ChIP HL-60 GSE63484.JMJD1C.HL-60 221 bp overlap
ChIP Kasumi-1 GSE63484.JMJD1C.Kasumi-1 98 bp overlap
JUN 4 datasets
ChIP MDA-BoM-1833 GSE112444.JUN.MDA-BoM-1833 122 bp overlap
ChIP MDA-BoM-1833 GSE112444.JUN.MDA-BoM-1833 190 bp overlap
ChIP MDA-BoM-1833_shp27 GSE112444.JUN.MDA-BoM-1833_shp27 121 bp overlap
ChIP MDA-MB-231 GSE112444.JUN.MDA-MB-231 111 bp overlap
KLF1 1 dataset
Motif DE_24h DE_24h-KLF1_MA0493.3 8 bp overlap
KLF10 1 dataset
Motif DE_24h DE_24h-KLF10_MA1511.2 9 bp overlap
KLF11 1 dataset
Motif DE_24h DE_24h-KLF11_MA1512.2 10 bp overlap
KLF14 1 dataset
Motif DE_24h DE_24h-KLF14_MA0740.2 9 bp overlap
KLF16 1 dataset
Motif DE_24h DE_24h-KLF16_MA0741.1 11 bp overlap
KLF2 1 dataset
Motif DE_24h DE_24h-KLF2_MA1515.2 8 bp overlap
KLF3 1 dataset
ChIP keratinocyte GSE140991.KLF3.keratinocyte 403 bp overlap
KLF4 2 datasets
Motif DE_24h DE_24h-KLF4_MA0039.5 8 bp overlap
Motif DE_24h DE_24h-KLF4_MA0039.5 8 bp overlap
KLF5 2 datasets
Motif DE_24h DE_24h-KLF5_MA0599.1 10 bp overlap
Motif DE_24h DE_24h-KLF5_MA0599.1 10 bp overlap
KLF6 1 dataset
ChIP PDAC GSE64557.KLF6.PDAC 126 bp overlap
KLF9 1 dataset
Motif DE_24h DE_24h-KLF9_MA1107.3 11 bp overlap
KMT2B 2 datasets
ChIP AML GSE112074.KMT2B.AML 211 bp overlap
ChIP AML_OG86 GSE112074.KMT2B.AML_OG86 309 bp overlap
KMT2B-D 1 dataset
ChIP SW480 GSE115985.KMT2B-D.SW480 183 bp overlap
LMO1 1 dataset
ChIP Jurkat GSE94391.LMO1.Jurkat 391 bp overlap
MAX 1 dataset
ChIP HeLa-S3 ENCSR000ECN.MAX.HeLa-S3 148 bp overlap
MED1 1 dataset
ChIP SUM159PT_DMSO_24h GSE87418.MED1.SUM159PT_DMSO_24h 258 bp overlap
MED26 4 datasets
ChIP HCT-116 GSE121355.MED26.HCT-116 269 bp overlap
ChIP HCT-116_aux GSE121355.MED26.HCT-116_aux 74 bp overlap
ChIP U2OS_SHCTR GSE73742.MED26.U2OS_SHCTR 153 bp overlap
ChIP U2OS_SHEP400 GSE73742.MED26.U2OS_SHEP400 164 bp overlap
MEIS1 2 datasets
Motif DE_24h DE_24h-MEIS1_MA0498.3 5 bp overlap
Motif DE_24h DE_24h-MEIS1_MA0498.3 5 bp overlap
MEIS2 1 dataset
Motif DE_24h DE_24h-MEIS2_MA0774.1 8 bp overlap
MEIS3 2 datasets
Motif DE_24h DE_24h-MEIS3_MA0775.2 7 bp overlap
Motif DE_24h DE_24h-MEIS3_MA0775.2 7 bp overlap
MITF 2 datasets
ChIP 501-mel_20ng_K243R GSE137522.MITF.501-mel_20ng_K243R 258 bp overlap
Motif DE_24h DE_24h-MITF_MA0620.4 10 bp overlap
MXI1 1 dataset
Motif DE_24h DE_24h-MXI1_MA1108.3 6 bp overlap
MYB 1 dataset
ChIP Jurkat GSE59657.MYB.Jurkat 403 bp overlap
MYC 1 dataset
ChIP HepG2 ENCFF575FXK 280 bp overlap
NELFCD 2 datasets
ChIP DLD-1_NELFCD-AID GSE144786.NELFCD.DLD-1_NELFCD-AID 127 bp overlap
ChIP DLD-1_NELFCD-AID GSE144786.NELFCD.DLD-1_NELFCD-AID 203 bp overlap
NELFE 2 datasets
ChIP DLD-1_NELFCD-AID GSE144786.NELFE.DLD-1_NELFCD-AID 136 bp overlap
ChIP DLD-1_NELFCD-AID GSE144786.NELFE.DLD-1_NELFCD-AID 129 bp overlap
NIPBL 2 datasets
ChIP HCT-116_RAD21-mAC GSE104888.NIPBL.HCT-116_RAD21-mAC 373 bp overlap
ChIP HCT-116_RAD21-mAC_500uM_auxin GSE104888.NIPBL.HCT-116_RAD21-mAC_500uM_auxin 403 bp overlap
NR1H2::RXRA 1 dataset
Motif DE_24h DE_24h-NR1H2RXRA_MA0115.1 17 bp overlap
NR2C2 1 dataset
ChIP Hep-G2 ENCSR559ZKI.NR2C2.Hep-G2 230 bp overlap
NR2F1 1 dataset
Motif DE_24h DE_24h-NR2F1_MA1537.2 13 bp overlap
NR3C1 1 dataset
ChIP Ishikawa ENCSR000BJC.NR3C1.Ishikawa 101 bp overlap
NRIP1 3 datasets
ChIP MCF-7 ERP005838.NRIP1.MCF-7 150 bp overlap
ChIP MCF-7_E2 ERP005838.NRIP1.MCF-7_E2 117 bp overlap
ChIP MCF-7_E2 ERP005838.NRIP1.MCF-7_E2 134 bp overlap
Nr2f6 1 dataset
Motif DE_24h DE_24h-Nr2f6_MA0677.2 13 bp overlap
PATZ1 1 dataset
Motif DE_24h DE_24h-PATZ1_MA1961.2 11 bp overlap
PCBP1 6 datasets
ChIP Hep-G2 GSE120104.PCBP1.Hep-G2 249 bp overlap
ChIP Hep-G2 ENCSR872EVQ.PCBP1.Hep-G2 237 bp overlap
ChIP HepG2 ENCFF447SRJ 360 bp overlap
ChIP HepG2 ENCFF604TPT 360 bp overlap
ChIP K-562 ENCSR052PTN.PCBP1.K-562 152 bp overlap
ChIP K-562 GSE120104.PCBP1.K-562 152 bp overlap
PCBP2 2 datasets
ChIP Hep-G2 ENCSR945NSF.PCBP2.Hep-G2 224 bp overlap
ChIP Hep-G2 GSE120104.PCBP2.Hep-G2 224 bp overlap
PLAG1 1 dataset
ChIP K-562 GSE111469.PLAG1.K-562 203 bp overlap
POLR2A 3 datasets
ChIP GM12878 ENCFF521FXC 386 bp overlap
ChIP H54 ENCFF398BXN 177 bp overlap
ChIP HCT116 ENCFF508RDJ 401 bp overlap
PRDM9 1 dataset
Motif DE_24h DE_24h-PRDM9_MA1723.2 20 bp overlap
RAD21 12 datasets
ChIP HCT-116 GSE131606.RAD21.HCT-116 101 bp overlap
ChIP HCT-116 GSE121355.RAD21.HCT-116 237 bp overlap
ChIP HeLa-S3_CTCF-s-OE GSE108869.RAD21.HeLa-S3_CTCF-s-OE 78 bp overlap
ChIP HepG2 ENCFF360ZSW 183 bp overlap
ChIP MCF-7 GSE72082.RAD21.MCF-7 110 bp overlap
ChIP THP-1_PMA_IFNb-6h GSE103477.RAD21.THP-1_PMA_IFNb-6h 329 bp overlap
ChIP THP-1_Pam3csk-000m-Flavo-240m GSE103477.RAD21.THP-1_Pam3csk-000m-Flavo-240m 64 bp overlap
ChIP THP-1_Pam3csk-020m-Flavo-000m GSE103477.RAD21.THP-1_Pam3csk-020m-Flavo-000m 126 bp overlap
ChIP THP-1_Pam3csk-030m-Flavo-000m GSE103477.RAD21.THP-1_Pam3csk-030m-Flavo-000m 92 bp overlap
ChIP THP-1_Pam3csk-120m-Flavo-000m GSE103477.RAD21.THP-1_Pam3csk-120m-Flavo-000m 95 bp overlap
ChIP THP-1_Pam3csk-360m-Flavo-240m GSE103477.RAD21.THP-1_Pam3csk-360m-Flavo-240m 76 bp overlap
ChIP THP-1_eGFP-IFNb GSE103477.RAD21.THP-1_eGFP-IFNb 103 bp overlap
REST 3 datasets
ChIP LNCaP GSE119385.REST.LNCaP 156 bp overlap
ChIP colorectal-cancer_shCDH1 GSE112555.REST.colorectal-cancer_shCDH1 403 bp overlap
ChIP colorectal-cancer_shCTRL_intact GSE112555.REST.colorectal-cancer_shCTRL_intact 170 bp overlap
RUNX1 1 dataset
ChIP Jurkat GSE68976.RUNX1.Jurkat 360 bp overlap
RUNX1T1 1 dataset
ChIP Kasumi-1 GSE115115.RUNX1T1.Kasumi-1 403 bp overlap
RUVBL1 1 dataset
ChIP Hep-G2 GSE97661.RUVBL1.Hep-G2 140 bp overlap
RUVBL2 1 dataset
ChIP U2OS GSE130602.RUVBL2.U2OS 132 bp overlap
SIX1 1 dataset
Motif DE_24h DE_24h-SIX1_MA1118.2 9 bp overlap
SIX2 1 dataset
Motif DE_24h DE_24h-SIX2_MA1119.2 11 bp overlap
SMAD3 5 datasets
ChIP H69_4TGF GSE145250.SMAD3.H69_4TGF 192 bp overlap
ChIP H69_4Veh GSE145250.SMAD3.H69_4Veh 210 bp overlap
ChIP H69_5TGF GSE145250.SMAD3.H69_5TGF 207 bp overlap
ChIP H69_5Veh GSE145250.SMAD3.H69_5Veh 212 bp overlap
ChIP SUM159PT GSE130364.SMAD3.SUM159PT 245 bp overlap
SMARCA4 10 datasets
ChIP CTV-1_DSG GSE128835.SMARCA4.CTV-1_DSG 403 bp overlap
ChIP CTV-1_DSG_SPI1-mut GSE128835.SMARCA4.CTV-1_DSG_SPI1-mut 179 bp overlap
ChIP CTV-1_FLAG GSE128835.SMARCA4.CTV-1_FLAG 174 bp overlap
ChIP CTV-1_FLAG_SPI1-mut GSE128835.SMARCA4.CTV-1_FLAG_SPI1-mut 202 bp overlap
ChIP CTV-1_delA GSE128835.SMARCA4.CTV-1_delA 153 bp overlap
ChIP CTV-1_delQ GSE128835.SMARCA4.CTV-1_delQ 181 bp overlap
ChIP J-Lat_GFP-Clone-A72_DMSO GSE100266.SMARCA4.J-Lat_GFP-Clone-A72_DMSO 66 bp overlap
ChIP J-Lat_GFP-Clone-A72_DMSO GSE100266.SMARCA4.J-Lat_GFP-Clone-A72_DMSO 108 bp overlap
ChIP MCF-7 GSE123284.SMARCA4.MCF-7 403 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 176 bp overlap
SMARCB1 4 datasets
ChIP MCF-7 GSE123284.SMARCB1.MCF-7 188 bp overlap
ChIP MCF-7_4-hydroxytamoxifen GSE123284.SMARCB1.MCF-7_4-hydroxytamoxifen 240 bp overlap
ChIP MCF-7_DCDT GSE123284.SMARCB1.MCF-7_DCDT 298 bp overlap
ChIP MCF-7_Fulvestrant GSE123284.SMARCB1.MCF-7_Fulvestrant 315 bp overlap
SOX2 5 datasets
ChIP HNSC GSE69479.SOX2.HNSC 89 bp overlap
ChIP hiPSC GSE67282.SOX2.hiPSC 96 bp overlap
ChIP hiPSC_INHI GSE67282.SOX2.hiPSC_INHI 103 bp overlap
ChIP hiPSC_KDP53 GSE67282.SOX2.hiPSC_KDP53 102 bp overlap
ChIP hiPSC_KDP53_INHI GSE67282.SOX2.hiPSC_KDP53_INHI 122 bp overlap
SOX21 1 dataset
ChIP neuroepithelilal-cells GSE110505.SOX21.neuroepithelilal-cells 193 bp overlap
SP1 2 datasets
ChIP HCT-116 ENCSR000BSF.SP1.HCT-116 129 bp overlap
ChIP HCT116 ENCFF800LBN 390 bp overlap
SP3 1 dataset
Motif DE_24h DE_24h-SP3_MA0746.3 11 bp overlap
SP8 1 dataset
Motif DE_24h DE_24h-SP8_MA0747.2 11 bp overlap
SPI1 1 dataset
ChIP CTV-1_delQ GSE128835.SPI1.CTV-1_delQ 207 bp overlap
SREBP2 3 datasets
ChIP HCC70 GSE126380.SREBP2.HCC70 299 bp overlap
ChIP monocyte GSE129202.SREBP2.monocyte 216 bp overlap
ChIP monocyte_TNF GSE129202.SREBP2.monocyte_TNF 399 bp overlap
STAG2 1 dataset
ChIP OCI-AML-3 GSE111537.STAG2.OCI-AML-3 124 bp overlap
STAT3 3 datasets
ChIP SUM159PT GSE152203.STAT3.SUM159PT 214 bp overlap
ChIP T-47D_JC5056 GSE126004.STAT3.T-47D_JC5056 247 bp overlap
ChIP T-47D_JC5062 GSE126004.STAT3.T-47D_JC5062 214 bp overlap
SUPT5H 8 datasets
ChIP DLD-1_NELFCD-AID GSE144786.SUPT5H.DLD-1_NELFCD-AID 403 bp overlap
ChIP DLD-1_NELFCD-AID_treated GSE144786.SUPT5H.DLD-1_NELFCD-AID_treated 94 bp overlap
ChIP DLD-1_NELFCD-AID_treated GSE144786.SUPT5H.DLD-1_NELFCD-AID_treated 126 bp overlap
ChIP DLD-1_NELFE-AID GSE144786.SUPT5H.DLD-1_NELFE-AID 164 bp overlap
ChIP HCT-116_Nut3 GSE138548.SUPT5H.HCT-116_Nut3 246 bp overlap
ChIP HCT-116_pThr806 GSE138548.SUPT5H.HCT-116_pThr806 148 bp overlap
ChIP HCT-116_pThr806 GSE138548.SUPT5H.HCT-116_pThr806 183 bp overlap
ChIP U2OS_siMYC GSE115365.SUPT5H.U2OS_siMYC 103 bp overlap
Six4 1 dataset
Motif DE_24h DE_24h-Six4_MA2001.2 7 bp overlap
Spz1 1 dataset
Motif DE_24h DE_24h-Spz1_MA0111.1 11 bp overlap
TAF3 1 dataset
ChIP HCT-116 GSE43539.TAF3.HCT-116 281 bp overlap
TCF7L2 1 dataset
ChIP HCT-116 ENCSR000EUV.TCF7L2.HCT-116 140 bp overlap
TFAP2A 1 dataset
ChIP MCF-7_E2 GSE60270.TFAP2A.MCF-7_E2 132 bp overlap
TFAP2C 1 dataset
ChIP MCF-7_ETOH GSE23852.TFAP2C.MCF-7_ETOH 324 bp overlap
TFE3 1 dataset
Motif DE_24h DE_24h-TFE3_MA0831.3 10 bp overlap
TFEB 1 dataset
Motif DE_24h DE_24h-TFEB_MA0692.2 8 bp overlap
THAP1 1 dataset
Motif DE_24h DE_24h-THAP1_MA0597.3 8 bp overlap
TP53 1 dataset
ChIP MDA-MB-231 GSE95303.TP53.MDA-MB-231 162 bp overlap
TRIM24 1 dataset
ChIP LNCaP_ETOH GSE69331.TRIM24.LNCaP_ETOH 403 bp overlap
TRIM28 1 dataset
ChIP hESC GSE115387.TRIM28.hESC 137 bp overlap
USF1 13 datasets
Motif DE_24h DE_24h-USF1_MA0093.4 10 bp overlap
ChIP GM12878 ENCFF880HJL 237 bp overlap
ChIP H1 ENCFF090WVU 110 bp overlap
ChIP HCT-116 ENCSR000BVK.USF1.HCT-116 190 bp overlap
ChIP HCT116 ENCFF330PYP 307 bp overlap
ChIP Hep-G2 ENCSR000BGM.USF1.Hep-G2 146 bp overlap
ChIP HepG2 ENCFF201JKA 129 bp overlap
ChIP HepG2 ENCFF807KYJ 201 bp overlap
ChIP Ishikawa ENCFF728IEG 256 bp overlap
ChIP Ishikawa ENCSR000BSX.USF1.Ishikawa 171 bp overlap
ChIP K-562 ENCSR000BKT.USF1.K-562 127 bp overlap
ChIP SK-N-SH ENCSR000BMF.USF1.SK-N-SH 111 bp overlap
ChIP WA01 ENCSR000BIU.USF1.WA01 224 bp overlap
USF2 8 datasets
ChIP GM12878 GSE97661.USF2.GM12878 252 bp overlap
ChIP HeLa-S3 ENCFF765YUZ 281 bp overlap
ChIP HeLa-S3 ENCSR000ECW.USF2.HeLa-S3 206 bp overlap
ChIP Hep-G2 GSE97661.USF2.Hep-G2 186 bp overlap
ChIP K-562 ENCSR578KEN.USF2.K-562 171 bp overlap
ChIP K562 ENCFF397QGU 265 bp overlap
ChIP WA01 ENCSR000ECD.USF2.WA01 144 bp overlap
ChIP WTC11 ENCFF139JAW 322 bp overlap
VDR 3 datasets
ChIP LX2_CALCIPOTRIOL GSE38103.VDR.LX2_CALCIPOTRIOL 108 bp overlap
ChIP LX2_CALCIPOTRIOL_TGFB1 GSE38103.VDR.LX2_CALCIPOTRIOL_TGFB1 400 bp overlap
ChIP THP-1_1d_1-25-OH-2D3 GSE89431.VDR.THP-1_1d_1-25-OH-2D3 403 bp overlap
ZBTB6 1 dataset
Motif DE_24h DE_24h-ZBTB6_MA1581.2 9 bp overlap
ZNF135 1 dataset
Motif DE_24h DE_24h-ZNF135_MA1587.1 14 bp overlap
ZNF143 2 datasets
ChIP MCF-7 GSE76454.ZNF143.MCF-7 152 bp overlap
ChIP MCF-7_E2 GSE76454.ZNF143.MCF-7_E2 245 bp overlap
ZNF148 2 datasets
Motif DE_24h DE_24h-ZNF148_MA1653.2 10 bp overlap
ChIP K-562 GSE121133.ZNF148.K-562 209 bp overlap
ZNF175 1 dataset
Motif DE_24h DE_24h-ZNF175_MA2332.1 9 bp overlap
ZNF263 1 dataset
ChIP Hep-G2 ENCSR313MMD.ZNF263.Hep-G2 397 bp overlap
ZNF281 4 datasets
Motif DE_24h DE_24h-ZNF281_MA1630.3 10 bp overlap
Motif DE_24h DE_24h-ZNF281_MA1630.3 10 bp overlap
Motif DE_24h DE_24h-ZNF281_MA1630.3 10 bp overlap
ChIP K-562 GSE121133.ZNF281.K-562 198 bp overlap
ZNF444 2 datasets
ChIP MCF-7 ENCFF602QFR 246 bp overlap
ChIP MCF-7 ENCSR038XIA.ZNF444.MCF-7 392 bp overlap
ZNF582 1 dataset
Motif DE_24h DE_24h-ZNF582_MA1983.2 19 bp overlap
Huangfu Lab · Publications · Resources · Contact