This gene encodes a protein that has both DNA-dependent ATPase and DNA helicase activities and belongs to the ATPases associated with diverse cellular activities (AAA+) protein family. The encoded protein associates with several multisubunit transcriptional complexes and with protein complexes involved in both ATP-dependent remodeling and histone modification. Alternate splicing results in multiple transcript variants. [provided by RefSeq, Jan 2016]
Transcription factors with Perturb-seq knockdown data for RUVBL1. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = RUVBL1 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of RUVBL1, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr3:128,051,597–128,052,755 | 71.5 kb | Distal (>10kb) Multiome | 839 | |
| chr3:128,075,184–128,076,787 | 48.1 kb | Distal (>10kb) Multiome | 509 | |
| chr3:128,123,342–128,124,277 | 52 bp | At TSS Multiome | 873 | |
| chr3:128,133,588–128,133,771 | 9.8 kb | Proximal (<10kb) | 73 | |
| chr3:128,153,057–128,154,021 | 29.6 kb | Distal (>10kb) Multiome | 954 | |
| chr3:128,160,456–128,161,161 | 37.0 kb | Distal (>10kb) Multiome | 21 | |
| chr3:128,280,443–128,281,168 | 157.1 kb | Distal (>10kb) Multiome | 186 |
Genomic view of the RUVBL1 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.