chr2:24,315,559–24,316,125

chr2 : 24,315,559 – 24,316,125

566 bp 99 TFs 7 linked genes

This 566 bp open chromatin element is linked to 7 target genes and is bound by 99 transcription factors.

Linked Genes

7 genes

Gene	Expression	Dist. to TSS	Distance	Link type
ITSN2		44.8 kb	Distal	Multiome
NCOA1		175.5 kb	Distal	Multiome
TP53I3		230.5 kb	Distal	Multiome
FAM228B		238.8 kb	Distal	Multiome
SF3B6		239.4 kb	Distal	Multiome
FKBP1B		266.0 kb	Distal	Multiome
WDCP		268.3 kb	Distal	Multiome

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

99 transcription factors

ARID3A 2 datasets

ChIP GM12878 ENCFF006WWZ 351 bp overlap

ChIP GM12878 ENCSR778UBR.ARID3A.GM12878 262 bp overlap

ChIP GM12878 ENCSR590KEQ.ARNT.GM12878 338 bp overlap

ASH2L 1 dataset

ChIP GM12878 ENCSR849WCQ.ASH2L.GM12878 224 bp overlap

ATF2 2 datasets

ChIP GM12878 ENCFF521LQJ 511 bp overlap

ChIP GM12878 ENCSR000BQK.ATF2.GM12878 249 bp overlap

ATF7 2 datasets

ChIP GM12878 ENCFF037PYH 517 bp overlap

ChIP GM12878 ENCSR014YCR.ATF7.GM12878 538 bp overlap

BACH1 2 datasets

ChIP GM12878 ENCFF576UEQ 365 bp overlap

ChIP GM12878 ENCSR636MKU.BACH1.GM12878 196 bp overlap

BACH2 1 dataset

ChIP B-cell_IL2 GSE102460.BACH2.B-cell_IL2 323 bp overlap

BATF 2 datasets

ChIP GM12878 ENCFF954REE 112 bp overlap

ChIP OCI-Ly10 GSE56857.BATF.OCI-Ly10 158 bp overlap

BATF3 3 datasets

ChIP GM12878 GSE97661.BATF3.GM12878 218 bp overlap

ChIP KK-1_BirA GSE94732.BATF3.KK-1_BirA 370 bp overlap

ChIP ST-1_BirA GSE94732.BATF3.ST-1_BirA 226 bp overlap

BCL11A 2 datasets

ChIP GM12878 ENCFF717YPR 271 bp overlap

ChIP GM12878 ENCSR000BHA.BCL11A.GM12878 414 bp overlap

BCL6 3 datasets

ChIP B-cell_GERMINAL_CENTER GSE68349.BCL6.B-cell_GERMINAL_CENTER 542 bp overlap

ChIP B-cell_GERMINAL_CENTER GSE43350.BCL6.B-cell_GERMINAL_CENTER 251 bp overlap

ChIP SU-DHL-4 GSE119038.BCL6.SU-DHL-4 566 bp overlap

BCLAF1 2 datasets

ChIP GM12878 ENCFF306JRM 431 bp overlap

ChIP GM12878 ENCFF306JRM 340 bp overlap

ChIP B-cell_GERMINAL_CENTER GSE43350.BCOR.B-cell_GERMINAL_CENTER 206 bp overlap

BHLHE40 3 datasets

ChIP GM12878 ENCFF521IZR 186 bp overlap

ChIP GM12878 ENCSR517QHU.BHLHE40.GM12878 554 bp overlap

ChIP GM12878 ENCSR987MTA.BHLHE40.GM12878 527 bp overlap

ChIP GM12878 ENCSR469WII.BMI1.GM12878 285 bp overlap

BORCS8-MEF2B,MEF2B 1 dataset

ChIP GM12878 ENCFF427QAI 497 bp overlap

ChIP HEK293T GSE39579.BRD3.HEK293T 165 bp overlap

BRD4 6 datasets

ChIP CLL_patient2_4h_CpG GSE109411.BRD4.CLL_patient2_4h_CpG 259 bp overlap

ChIP GM15850_DMSO GSE99402.BRD4.GM15850_DMSO 566 bp overlap

ChIP GM15850_PA1_JQ1 GSE99402.BRD4.GM15850_PA1_JQ1 241 bp overlap

ChIP GM15850_Syn-TEF1 GSE99402.BRD4.GM15850_Syn-TEF1 390 bp overlap

ChIP HEK293T GSE39579.BRD4.HEK293T 185 bp overlap

ChIP Mutu-1_vehicle GSE84213.BRD4.Mutu-1_vehicle 289 bp overlap

ChIP GM12878 ENCFF542UDC 465 bp overlap

COMMD3-BMI1,BMI1 1 dataset

ChIP GM12878 ENCFF249AMT 420 bp overlap

CREB1 2 datasets

ChIP GM12878 ENCFF870CVH 351 bp overlap

ChIP GM12878 ENCSR000BUF.CREB1.GM12878 300 bp overlap

CREBBP 2 datasets

ChIP tonsil_GCBC_p5 GSE89688.CREBBP.tonsil_GCBC_p5 515 bp overlap

ChIP tonsil_GCBc_p4 GSE89688.CREBBP.tonsil_GCBc_p4 566 bp overlap

CREM 2 datasets

ChIP GM12878 ENCFF391UGE 361 bp overlap

ChIP GM12878 ENCSR839XZU.CREM.GM12878 271 bp overlap

DPF2 2 datasets

ChIP GM12878 ENCFF681AJV 566 bp overlap

ChIP GM12878 ENCSR509FWH.DPF2.GM12878 566 bp overlap

EBF1 2 datasets

ChIP GM12878 ENCFF167CZS 321 bp overlap

ChIP MUTUL GSE75503.EBF1.MUTUL 156 bp overlap

ChIP GM12878 ENCFF266FYW 219 bp overlap

ChIP GM12878 ENCSR841NDX.ELF1.GM12878 238 bp overlap

EOMES 1 dataset

ChIP hESC GSE26097.EOMES.hESC 156 bp overlap

EP300 2 datasets

ChIP GM12878 ENCFF039QRE 351 bp overlap

ChIP GM12878 ENCFF242HCG 361 bp overlap

ChIP CTV-1_DSG GSE128835.ETS1.CTV-1_DSG 204 bp overlap

ETV6 3 datasets

ChIP GM12878 ENCFF105ZMI 421 bp overlap

ChIP GM12878 GSE97661.ETV6.GM12878 330 bp overlap

ChIP GM12878 ENCSR626VUC.ETV6.GM12878 308 bp overlap

FOXA2 2 datasets

ChIP DE DE-FOXA2-1 481 bp overlap

ChIP DE DE-FOXA2-2 384 bp overlap

FOXM1 2 datasets

ChIP GM12878 ENCFF264DJE 506 bp overlap

ChIP GM12878 ENCSR000BRU.FOXM1.GM12878 214 bp overlap

FOXO1 1 dataset

ChIP B-cell_GERMINAL_CENTER GSE68349.FOXO1.B-cell_GERMINAL_CENTER 439 bp overlap

FOXP1 1 dataset

ChIP B-cell_CD77-pos GSE114803.FOXP1.B-cell_CD77-pos 117 bp overlap

GATA1 1 dataset

ChIP CD34_Day7_30min GSE104676.GATA1.CD34_Day7_30min 55 bp overlap

GATA4 2 datasets

ChIP DE DE-GATA4-1 517 bp overlap

ChIP DE DE-GATA4-2 492 bp overlap

GATA6 3 datasets

ChIP DE DE-GATA6-1 467 bp overlap

ChIP DE DE-GATA6-2 566 bp overlap

ChIP DE_D2 S55-DE-d2-GATA6-exp2 566 bp overlap

ChIP GM12878 ENCFF653WYI 193 bp overlap

IKZF1 4 datasets

ChIP GM12878 ENCFF616FJX 540 bp overlap

ChIP GM12878 ENCFF753XDO 546 bp overlap

ChIP GM12878 ENCFF753XDO 546 bp overlap

ChIP GM12878 ENCFF824TGK 429 bp overlap

IKZF2 5 datasets

ChIP GM12878 ENCFF238LYK 390 bp overlap

ChIP GM12878 ENCFF918AID 361 bp overlap

ChIP GM12878 ENCFF918AID 333 bp overlap

ChIP GM12878 ENCSR680UQE.IKZF2.GM12878 566 bp overlap

ChIP GM12878 ENCSR822AHX.IKZF2.GM12878 558 bp overlap

IRF4 4 datasets

ChIP B-cell GSE142493.IRF4.B-cell 426 bp overlap

ChIP GM12878 ENCSR000BGY.IRF4.GM12878 262 bp overlap

ChIP OCI-Ly10 GSE142493.IRF4.OCI-Ly10 296 bp overlap

ChIP OCI-Ly3_SHCTR GSE56857.IRF4.OCI-Ly3_SHCTR 206 bp overlap

ChIP Karpas-299 GSE151413.JUN.Karpas-299 564 bp overlap

JUNB 4 datasets

ChIP GM12878 ENCFF667EJQ 290 bp overlap

ChIP GM12878 ENCSR897MMC.JUNB.GM12878 364 bp overlap

ChIP Karpas-299 GSE151413.JUNB.Karpas-299 73 bp overlap

ChIP Karpas-299 GSE151413.JUNB.Karpas-299 360 bp overlap

ChIP CD4_Th1 GSE72266.MAF.CD4_Th1 186 bp overlap

ChIP GM12878 ENCFF849VCQ 421 bp overlap

ChIP P493-6 GSE36354.MAX.P493-6 189 bp overlap

ChIP P493-6_CMYC_1H GSE36354.MAX.P493-6_CMYC_1H 402 bp overlap

ChIP P493-6_CMYC_24H GSE36354.MAX.P493-6_CMYC_24H 306 bp overlap

ChIP GM12878 GSE93080.MED1.GM12878 207 bp overlap

MEF2A 2 datasets

ChIP GM12878 ENCFF652BHX 291 bp overlap

ChIP GM12878 ENCSR000BKB.MEF2A.GM12878 189 bp overlap

MEF2B 2 datasets

ChIP GM12878 ENCSR177VFS.MEF2B.GM12878 526 bp overlap

ChIP tonsil GSE110682.MEF2B.tonsil 544 bp overlap

MLLT1 1 dataset

ChIP GM12878 ENCSR552XSN.MLLT1.GM12878 396 bp overlap

MTA2 2 datasets

ChIP GM12878 ENCFF615CWQ 472 bp overlap

ChIP GM12878 ENCSR293QAR.MTA2.GM12878 506 bp overlap

MTA3 2 datasets

ChIP GM12878 ENCFF681QPL 566 bp overlap

ChIP GM12878 ENCSR000BRH.MTA3.GM12878 210 bp overlap

ChIP CD4_Th1 GSE72266.MYB.CD4_Th1 214 bp overlap

ChIP CC-LP-1 GSE124430.MYC.CC-LP-1 100 bp overlap

ChIP Raji GSE30726.MYC.Raji 371 bp overlap

ChIP GM12878 ENCFF213ZNN 526 bp overlap

ChIP GM12878 ENCFF213ZNN 339 bp overlap

ChIP GM12878 ENCSR278SQL.NBN.GM12878 486 bp overlap

NFATC1 2 datasets

ChIP GM12878 ENCFF023CAZ 548 bp overlap

ChIP GM12878 ENCSR000BQL.NFATC1.GM12878 180 bp overlap

NFATC3 2 datasets

ChIP GM12878 ENCFF340KVJ 510 bp overlap

ChIP GM12878 ENCSR437GBJ.NFATC3.GM12878 558 bp overlap

NFIC 2 datasets

ChIP GM12878 ENCFF259FWL 288 bp overlap

ChIP GM12878 ENCSR000BRN.NFIC.GM12878 331 bp overlap

NR2F1 3 datasets

ChIP GM12878 ENCFF273VKX 505 bp overlap

ChIP GM12878 ENCFF273VKX 331 bp overlap

ChIP GM12878 ENCSR514VYD.NR2F1.GM12878 267 bp overlap

PAX5 9 datasets

ChIP GM12878 ENCFF482PUW 133 bp overlap

ChIP GM12878 ENCFF503GOV 77 bp overlap

ChIP GM12878 ENCSR000BHD.PAX5.GM12878 499 bp overlap

ChIP GM12878 ENCSR000BHJ.PAX5.GM12878 266 bp overlap

ChIP GM12878 ENCSR000BHJ.PAX5.GM12878 118 bp overlap

ChIP GM12891 ENCFF490KVF 205 bp overlap

ChIP GM12891 ENCSR000BJH.PAX5.GM12891 254 bp overlap

ChIP GM12892 ENCFF635MSF 277 bp overlap

ChIP GM12892 ENCSR000BJI.PAX5.GM12892 302 bp overlap

ChIP GM12878 ENCSR000BGR.PBX3.GM12878 128 bp overlap

PKNOX1 1 dataset

ChIP GM12878 ENCSR711XNY.PKNOX1.GM12878 281 bp overlap

ChIP GM12878 ENCFF160JQZ 527 bp overlap

POLR2A 1 dataset

ChIP spleen ENCFF044PYR 204 bp overlap

POU2F2 1 dataset

ChIP GM12891 ENCFF166YPP 311 bp overlap

RAD51 3 datasets

ChIP GM12878 ENCFF916JXQ 367 bp overlap

ChIP GM12878 ENCFF916JXQ 379 bp overlap

ChIP GM12878 ENCSR482TWQ.RAD51.GM12878 566 bp overlap

RBM22 2 datasets

ChIP HepG2 ENCFF292RVQ 438 bp overlap

ChIP HepG2 ENCFF561IAJ 465 bp overlap

RBPJ 3 datasets

ChIP LCL GSE75503.RBPJ.LCL 384 bp overlap

ChIP MUTUL GSE75503.RBPJ.MUTUL 446 bp overlap

ChIP NHEK GSE29498.RBPJ.NHEK 123 bp overlap

RELA 3 datasets

ChIP BJAB GSE117250.RELA.BJAB 146 bp overlap

ChIP GM12878 ENCSR000EAG.RELA.GM12878 212 bp overlap

ChIP aortic-endothelial-cell_IL1B_D7 GSE139377.RELA.aortic-endothelial-cell_IL1B_D7 138 bp overlap

RELB 2 datasets

ChIP GM12878 ENCFF217ADF 566 bp overlap

ChIP GM12878 ENCSR387QUV.RELB.GM12878 440 bp overlap

ChIP GM12878 ENCSR000BQS.REST.GM12878 96 bp overlap

RUNX3 1 dataset

ChIP GM12878 ENCFF395WHA 371 bp overlap

SKIL 2 datasets

ChIP GM12878 ENCFF171OVM 482 bp overlap

ChIP GM12878 ENCSR212YKD.SKIL.GM12878 557 bp overlap

SMARCA4 2 datasets

ChIP CTV-1_DSG GSE128835.SMARCA4.CTV-1_DSG 236 bp overlap

ChIP CTV-1_FLAG GSE128835.SMARCA4.CTV-1_FLAG 268 bp overlap

SMARCA5 1 dataset

ChIP GM12878 ENCSR706YUH.SMARCA5.GM12878 310 bp overlap

SOX17 1 dataset

ChIP DE_D2 DED2-SOX17_Batch_II 418 bp overlap

SOX17_M 1 dataset

ChIP DE_D2 DED2-SOX17-M_Batch_II 543 bp overlap

ChIP RH4_Entinostat-6H GSE116344.SOX8.RH4_Entinostat-6H 201 bp overlap

SPI1 9 datasets

ChIP CD34_FETAL GSE70660.SPI1.CD34_FETAL 156 bp overlap

ChIP CTV-1_FLAG_15perc GSE128835.SPI1.CTV-1_FLAG_15perc 290 bp overlap

ChIP CTV-1_delQ GSE128835.SPI1.CTV-1_delQ 215 bp overlap

ChIP GM12878 ENCFF134LCP 95 bp overlap

ChIP GM12891 ENCFF563IUT 241 bp overlap

ChIP GM12891 ENCSR000BIJ.SPI1.GM12891 235 bp overlap

ChIP HL-60 ENCFF645GBT 271 bp overlap

ChIP OCI-Ly7 GSE69558.SPI1.OCI-Ly7 146 bp overlap

ChIP primary-B-cell_donorA GSE128834.SPI1.primary-B-cell_donorA 272 bp overlap

SPIB 3 datasets

ChIP OCI-Ly10 GSE56857.SPIB.OCI-Ly10 211 bp overlap

ChIP OCI-Ly3 GSE56857.SPIB.OCI-Ly3 372 bp overlap

ChIP OCI-Ly3_SHCTR GSE56857.SPIB.OCI-Ly3_SHCTR 333 bp overlap

STAT3 1 dataset

ChIP SU-DHL-2 GSE50723.STAT3.SU-DHL-2 174 bp overlap

STAT5A 2 datasets

ChIP GM12878 ENCFF267JUM 566 bp overlap

ChIP GM12878 ENCSR000BQZ.STAT5A.GM12878 156 bp overlap

ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 188 bp overlap

TAF1 2 datasets

ChIP GM12878 ENCFF746UKX 331 bp overlap

ChIP GM12878 ENCSR000BGS.TAF1.GM12878 231 bp overlap

TARDBP 2 datasets

ChIP GM12878 ENCFF866POT 465 bp overlap

ChIP GM12878 ENCSR412QBS.TARDBP.GM12878 540 bp overlap

ChIP GM12878 ENCFF571OXR 385 bp overlap

TBX21 2 datasets

ChIP GM12878 ENCFF951HUW 435 bp overlap

ChIP GM12878 ENCSR739IHN.TBX21.GM12878 566 bp overlap

TCF12 3 datasets

ChIP GM12878 ENCFF433DMU 329 bp overlap

ChIP GM12878 ENCSR000BGZ.TCF12.GM12878 381 bp overlap

ChIP GM12878 ENCSR725VFL.TCF12.GM12878 310 bp overlap

TCF3 2 datasets

ChIP GM12878 ENCFF658WIO 297 bp overlap

ChIP GM12878 ENCSR000BQT.TCF3.GM12878 262 bp overlap

TERF1 1 dataset

ChIP LCL GSE55053.TERF1.LCL 444 bp overlap

TERF2 1 dataset

ChIP LCL GSE55053.TERF2.LCL 286 bp overlap

TRIM22 3 datasets

ChIP GM12878 ENCFF919OMX 445 bp overlap

ChIP GM12878 ENCFF919OMX 261 bp overlap

ChIP GM12878 ENCSR835XKS.TRIM22.GM12878 495 bp overlap

ChIP GM12878 GSE97661.USF2.GM12878 317 bp overlap

ZBED1 1 dataset

ChIP GM12878 ENCSR207PFI.ZBED1.GM12878 161 bp overlap

ZNF217 2 datasets

ChIP GM12878 ENCFF978IGL 455 bp overlap

ChIP GM12878 ENCSR764CZW.ZNF217.GM12878 363 bp overlap

ZNF24 2 datasets

ChIP GM12878 ENCFF688STO 341 bp overlap

ChIP GM12878 ENCSR072PWP.ZNF24.GM12878 240 bp overlap

ZNF384 1 dataset

ChIP GM12878 ENCFF229VSP 321 bp overlap

ZNF687 2 datasets

ChIP GM12878 ENCFF233SGE 309 bp overlap

ChIP GM12878 ENCSR859FDL.ZNF687.GM12878 327 bp overlap

ZSCAN5C 2 datasets

ChIP HEK293 ENCFF343DTU 357 bp overlap

ChIP HEK293 ENCSR731AGO.ZSCAN5C.HEK293 362 bp overlap