chr12 : 49,550,509 49,551,225
716 bp 126 TFs 10 linked genes
This 716 bp open chromatin element is linked to 10 target genes and is bound by 126 transcription factors.
Linked Genes
10 genes
Link type
Gene Expression Dist. to TSS Distance Link type
MCRS1 17.1 kb Distal Multiome+HiCAR
PRPF40B 17.2 kb Distal Multiome+HiCAR
FMNL3 156.4 kb Distal Multiome
SPATS2 184.1 kb Distal Multiome+HiCAR
TMBIM6 190.6 kb Distal Multiome
TROAP 227.8 kb Distal Multiome
NCKAP5L 277.4 kb Distal Multiome
TUBA1C 285.9 kb Distal Multiome
ENSG00000258101 286.2 kb Distal Multiome
BCDIN3D 292.1 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:49,545,509 – 49,556,225
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
126 transcription factors
Source
Cell type
ARID3A 1 dataset
ChIP HepG2 ENCFF341DES 385 bp overlap
ASH2L 1 dataset
ChIP Hep-G2 ENCSR508LMH.ASH2L.Hep-G2 466 bp overlap
ATF2 1 dataset
ChIP HepG2 ENCFF578ZBI 317 bp overlap
BRD4 1 dataset
ChIP NCI-H1963_shNONT GSE145028.BRD4.NCI-H1963_shNONT 89 bp overlap
CBFB 1 dataset
ChIP Hep-G2 ENCSR479RZV.CBFB.Hep-G2 225 bp overlap
CREB1 1 dataset
ChIP HepG2 ENCFF245CBB 276 bp overlap
CTCF 1 dataset
ChIP pancreas_body ENCSR408XTO.CTCF.pancreas_body 209 bp overlap
DMAP1 1 dataset
ChIP Hep-G2 ENCSR670YPQ.DMAP1.Hep-G2 301 bp overlap
DRAP1 2 datasets
ChIP Hep-G2 ENCSR765MKZ.DRAP1.Hep-G2 575 bp overlap
ChIP HepG2 ENCFF296JHR 379 bp overlap
E2F4 2 datasets
ChIP Hep-G2 ENCSR924LSO.E2F4.Hep-G2 205 bp overlap
ChIP HepG2 ENCFF311TOD 379 bp overlap
EGR1 2 datasets
ChIP Hep-G2 ENCSR026GSW.EGR1.Hep-G2 116 bp overlap
ChIP Hep-G2 ENCSR026GSW.EGR1.Hep-G2 285 bp overlap
ELF1 1 dataset
ChIP Hep-G2 ENCSR321VGW.ELF1.Hep-G2 136 bp overlap
ELK1 1 dataset
ChIP HepG2 ENCFF917BQJ 385 bp overlap
EP300 2 datasets
ChIP Hep-G2 ENCSR000BLW.EP300.Hep-G2 194 bp overlap
ChIP HepG2 ENCFF354ACD 245 bp overlap
ESR1 1 dataset
ChIP Ishikawa_DMSO_D538G_clone3 GSE132426.ESR1.Ishikawa_DMSO_D538G_clone3 53 bp overlap
EZH2 1 dataset
ChIP SF8628 GSE94834.EZH2.SF8628 632 bp overlap
FOS 1 dataset
ChIP HCT-116_A7A GSE152144.FOS.HCT-116_A7A 716 bp overlap
FOXA2 1 dataset
ChIP DE DE-FOXA2-2 282 bp overlap
FOXP4 3 datasets
ChIP Hep-G2 ENCSR232LLP.FOXP4.Hep-G2 178 bp overlap
ChIP HepG2 ENCFF462ULY 431 bp overlap
ChIP HepG2 ENCFF462ULY 280 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 550 bp overlap
ChIP DE DE-GATA4-2 609 bp overlap
ChIP foregut GSE117136.GATA4.foregut 397 bp overlap
GATA6 6 datasets
ChIP DE DE-GATA6-1 550 bp overlap
ChIP DE DE-GATA6-2 557 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 497 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 491 bp overlap
ChIP foregut GSE117136.GATA6.foregut 424 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 430 bp overlap
GFI1 1 dataset
ChIP HepG2 ENCFF472INF 252 bp overlap
HDAC1 1 dataset
ChIP HepG2 ENCFF304IEJ 408 bp overlap
HDAC2 4 datasets
ChIP Hep-G2 ENCSR000BMC.HDAC2.Hep-G2 101 bp overlap
ChIP Hep-G2 ENCSR000BMC.HDAC2.Hep-G2 209 bp overlap
ChIP HepG2 ENCFF087XCR 337 bp overlap
ChIP HepG2 ENCFF087XCR 274 bp overlap
HNF1A 3 datasets
ChIP Hep-G2 ENCSR800QIT.HNF1A.Hep-G2 282 bp overlap
ChIP HepG2 ENCFF352VYI 103 bp overlap
ChIP HepG2 ENCFF540TRC 442 bp overlap
HNF1B 3 datasets
ChIP Hep-G2 ENCSR127XTZ.HNF1B.Hep-G2 262 bp overlap
ChIP HepG2 ENCFF928THX 407 bp overlap
ChIP foregut GSE117136.HNF1B.foregut 375 bp overlap
HNF4A 2 datasets
ChIP Hep-G2 ENCSR469FBY.HNF4A.Hep-G2 218 bp overlap
ChIP HepG2 ENCFF146SSF 361 bp overlap
HOXA3 2 datasets
ChIP Hep-G2 ENCSR999JKC.HOXA3.Hep-G2 354 bp overlap
ChIP HepG2 ENCFF374TCI 372 bp overlap
KAT8 1 dataset
ChIP HepG2 ENCFF890JFC 518 bp overlap
KDM1A 1 dataset
ChIP HepG2 ENCFF240UWG 322 bp overlap
KDM2A 1 dataset
ChIP HepG2 ENCFF491GTR 425 bp overlap
KDM3A 1 dataset
ChIP Hep-G2 ENCSR387JKT.KDM3A.Hep-G2 204 bp overlap
KDM5B 1 dataset
ChIP Hep-G2 ENCSR227MRE.KDM5B.Hep-G2 112 bp overlap
KLF6 1 dataset
ChIP Hep-G2 ENCSR757EKM.KLF6.Hep-G2 319 bp overlap
KMT2A 1 dataset
ChIP Hep-G2 ENCSR692GFR.KMT2A.Hep-G2 242 bp overlap
LCORL 1 dataset
ChIP HepG2 ENCFF017FTI 470 bp overlap
LIN54 1 dataset
ChIP Hep-G2 ENCSR597MCV.LIN54.Hep-G2 255 bp overlap
MAX 3 datasets
ChIP Hep-G2 ENCSR168DYA.MAX.Hep-G2 319 bp overlap
ChIP Hep-G2 ENCSR000BTM.MAX.Hep-G2 187 bp overlap
ChIP HepG2 ENCFF507HCX 165 bp overlap
MBD3 1 dataset
ChIP MCF-7 GSE44737.MBD3.MCF-7 137 bp overlap
MEF2A 1 dataset
ChIP Hep-G2 ENCSR291MJH.MEF2A.Hep-G2 175 bp overlap
MGA 1 dataset
ChIP HepG2 ENCFF057YJE 407 bp overlap
MNX1 1 dataset
ChIP Hep-G2 ENCSR108MKR.MNX1.Hep-G2 214 bp overlap
MTA1 1 dataset
ChIP Hep-G2 ENCSR983KRB.MTA1.Hep-G2 131 bp overlap
MXD4 1 dataset
ChIP Hep-G2 ENCSR441KFW.MXD4.Hep-G2 275 bp overlap
MYBL2 1 dataset
ChIP Hep-G2 ENCSR581KCO.MYBL2.Hep-G2 143 bp overlap
MYC 1 dataset
ChIP HepG2 ENCFF575FXK 525 bp overlap
NCOA2 1 dataset
ChIP HepG2 ENCFF853BJJ 369 bp overlap
NFYC 1 dataset
ChIP Hep-G2 ENCSR569ARC.NFYC.Hep-G2 183 bp overlap
NR2F6 2 datasets
ChIP Hep-G2 ENCSR518WPL.NR2F6.Hep-G2 285 bp overlap
ChIP HepG2 ENCFF514UJI 345 bp overlap
NR5A1 2 datasets
ChIP Hep-G2 ENCSR310OZS.NR5A1.Hep-G2 189 bp overlap
ChIP HepG2 ENCFF970YZO 377 bp overlap
PAF1 1 dataset
ChIP HCT-116_ab20662 GSE97527.PAF1.HCT-116_ab20662 201 bp overlap
PAXIP1 2 datasets
ChIP Hep-G2 ENCSR530ARJ.PAXIP1.Hep-G2 470 bp overlap
ChIP HepG2 ENCFF526NOJ 433 bp overlap
PHF21A 1 dataset
ChIP HepG2 ENCFF525EUW 438 bp overlap
PHF8 1 dataset
ChIP Hep-G2 ENCSR604VAE.PHF8.Hep-G2 538 bp overlap
POLR2A 3 datasets
ChIP HepG2 ENCFF350RIU 517 bp overlap
ChIP HepG2 ENCFF718XAJ 421 bp overlap
ChIP HepG2 ENCFF736SLT 457 bp overlap
PPARG 1 dataset
ChIP Hep-G2 ENCSR130VQL.PPARG.Hep-G2 237 bp overlap
PRDM10 4 datasets
ChIP Hep-G2 ENCSR289PSX.PRDM10.Hep-G2 151 bp overlap
ChIP Hep-G2 ENCSR289PSX.PRDM10.Hep-G2 297 bp overlap
ChIP HepG2 ENCFF324FNA 498 bp overlap
ChIP HepG2 ENCFF324FNA 242 bp overlap
PRDM15 1 dataset
ChIP HepG2 ENCFF259LUZ 136 bp overlap
RARA 1 dataset
ChIP HepG2 ENCFF582XUA 357 bp overlap
RBM39 1 dataset
ChIP HepG2 ENCFF801JUH 346 bp overlap
RELA 1 dataset
ChIP GM19099 ENCSR000EBI.RELA.GM19099 156 bp overlap
RFXAP 1 dataset
ChIP Hep-G2 ENCSR524RLU.RFXAP.Hep-G2 156 bp overlap
RXRA 1 dataset
ChIP HepG2 ENCFF763IEA 381 bp overlap
SALL1 2 datasets
ChIP HepG2 ENCFF426MCK 393 bp overlap
ChIP HepG2 ENCFF426MCK 110 bp overlap
SAP130 1 dataset
ChIP HepG2 ENCFF892EHZ 454 bp overlap
SIX1 1 dataset
ChIP Hep-G2 ENCSR561BQM.SIX1.Hep-G2 136 bp overlap
SKI 1 dataset
ChIP Hep-G2 ENCSR754MUD.SKI.Hep-G2 432 bp overlap
SMAD1 2 datasets
ChIP Hep-G2 ENCSR213QOZ.SMAD1.Hep-G2 187 bp overlap
ChIP Hep-G2 ENCSR213QOZ.SMAD1.Hep-G2 118 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 226 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 536 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 390 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 457 bp overlap
SMAD3 1 dataset
ChIP Hep-G2 ENCSR005GZH.SMAD3.Hep-G2 233 bp overlap
SMAD4 2 datasets
ChIP HepG2 ENCFF615GTE 295 bp overlap
ChIP endoderm GSE29422.SMAD4.endoderm 177 bp overlap
SNAI1 1 dataset
ChIP HepG2 ENCFF017SIW 660 bp overlap
SOX13 2 datasets
ChIP HepG2 ENCFF062VSQ 254 bp overlap
ChIP HepG2 ENCFF231PAK 341 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 242 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 716 bp overlap
SOX5 1 dataset
ChIP HepG2 ENCFF470KZD 180 bp overlap
SOX6 2 datasets
ChIP Hep-G2 ENCSR766TSU.SOX6.Hep-G2 633 bp overlap
ChIP HepG2 ENCFF767OCK 515 bp overlap
SP1 3 datasets
ChIP Hep-G2 ENCSR000BJX.SP1.Hep-G2 178 bp overlap
ChIP HepG2 ENCFF123KAM 281 bp overlap
ChIP liver ENCFF769YSM 444 bp overlap
SP4 1 dataset
ChIP HepG2 ENCFF865DSQ 550 bp overlap
TAF1 2 datasets
ChIP Hep-G2 ENCSR918OKK.TAF1.Hep-G2 367 bp overlap
ChIP HepG2 ENCFF946IUP 573 bp overlap
TBX2 3 datasets
ChIP Hep-G2 ENCSR410FEH.TBX2.Hep-G2 372 bp overlap
ChIP HepG2 ENCFF811TLA 563 bp overlap
ChIP HepG2 ENCFF811TLA 358 bp overlap
TEAD3 1 dataset
ChIP HepG2 ENCFF054UUL 350 bp overlap
TFAP4 1 dataset
ChIP Hep-G2 ENCSR103SZL.TFAP4.Hep-G2 178 bp overlap
TFDP1 1 dataset
ChIP HepG2 ENCFF717XKC 306 bp overlap
TFDP2 2 datasets
ChIP Hep-G2 ENCSR069JKP.TFDP2.Hep-G2 233 bp overlap
ChIP HepG2 ENCFF794WDW 327 bp overlap
TFE3 2 datasets
ChIP Hep-G2 ENCSR589SNT.TFE3.Hep-G2 261 bp overlap
ChIP HepG2 ENCFF268PFH 376 bp overlap
TGIF2 2 datasets
ChIP HepG2 ENCFF421ZJN 411 bp overlap
ChIP HepG2 ENCFF421ZJN 411 bp overlap
THRA 1 dataset
ChIP HepG2 ENCFF025KMX 385 bp overlap
THRB 1 dataset
ChIP Hep-G2 ENCSR430JGJ.THRB.Hep-G2 239 bp overlap
UBTF 1 dataset
ChIP HepG2 ENCFF424RNN 529 bp overlap
YEATS4 1 dataset
ChIP HepG2 ENCFF340OIC 603 bp overlap
YY1 1 dataset
ChIP Hep-G2 ENCSR000BNT.YY1.Hep-G2 159 bp overlap
ZBED4 2 datasets
ChIP Hep-G2 ENCSR409PMR.ZBED4.Hep-G2 128 bp overlap
ChIP Hep-G2 ENCSR409PMR.ZBED4.Hep-G2 232 bp overlap
ZBTB48 1 dataset
ChIP U2OS_ZBTB48-KO GSE96776.ZBTB48.U2OS_ZBTB48-KO 67 bp overlap
ZBTB7B 2 datasets
ChIP Hep-G2 ENCSR322ULL.ZBTB7B.Hep-G2 716 bp overlap
ChIP HepG2 ENCFF763OCV 356 bp overlap
ZEB1 2 datasets
ChIP Hep-G2 ENCSR000BVN.ZEB1.Hep-G2 209 bp overlap
ChIP HepG2 ENCFF808RQT 97 bp overlap
ZFX 2 datasets
ChIP HepG2 ENCFF016NZF 90 bp overlap
ChIP HepG2 ENCFF016NZF 642 bp overlap
ZFY 2 datasets
ChIP Hep-G2 ENCSR949OEV.ZFY.Hep-G2 517 bp overlap
ChIP HepG2 ENCFF106ELT 634 bp overlap
ZGPAT 2 datasets
ChIP Hep-G2 ENCSR704IGU.ZGPAT.Hep-G2 338 bp overlap
ChIP HepG2 ENCFF055YSO 520 bp overlap
ZMYM3 2 datasets
ChIP Hep-G2_Ab_JH39-2-2F10 GSE97661.ZMYM3.Hep-G2_Ab_JH39-2-2F10 156 bp overlap
ChIP HepG2 ENCFF408KTI 319 bp overlap
ZNF124 1 dataset
ChIP HepG2 ENCFF764EFJ 361 bp overlap
ZNF276 2 datasets
ChIP Hep-G2 ENCSR076KLJ.ZNF276.Hep-G2 362 bp overlap
ChIP Hep-G2 ENCSR076KLJ.ZNF276.Hep-G2 97 bp overlap
ZNF280B 1 dataset
ChIP HepG2 ENCFF084BYB 69 bp overlap
ZNF331 2 datasets
ChIP HepG2 ENCFF842SZN 371 bp overlap
ChIP HepG2 ENCFF842SZN 209 bp overlap
ZNF407 2 datasets
ChIP Hep-G2 ENCSR005WGY.ZNF407.Hep-G2 173 bp overlap
ChIP Hep-G2 ENCSR005WGY.ZNF407.Hep-G2 194 bp overlap
ZNF414 1 dataset
ChIP HepG2 ENCFF809EHH 551 bp overlap
ZNF483 1 dataset
ChIP HepG2 ENCFF464ZKH 448 bp overlap
ZNF543 1 dataset
ChIP HepG2 ENCFF864SAR 462 bp overlap
ZNF557 1 dataset
ChIP HepG2 ENCFF590SZW 365 bp overlap
ZNF687 2 datasets
ChIP HepG2 ENCFF653WIX 71 bp overlap
ChIP HepG2 ENCFF653WIX 283 bp overlap
ZNF710 2 datasets
ChIP HepG2 ENCFF170JWO 531 bp overlap
ChIP HepG2 ENCFF170JWO 366 bp overlap
ZNF768 1 dataset
ChIP HepG2 ENCFF388QCK 299 bp overlap
ZNF891 2 datasets
ChIP Hep-G2 ENCSR020CLV.ZNF891.Hep-G2 159 bp overlap
ChIP HepG2 ENCFF491CCY 86 bp overlap
ZSCAN25 1 dataset
ChIP HepG2 ENCFF265FLD 229 bp overlap