chr11 : 47,986,227 – 47,986,672
445 bp 118 TFs 1 linked gene
This 445 bp open chromatin element is linked to PTPRJ and is bound by 118 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
PTPRJ 5.5 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr11:47,981,227 – 47,991,672
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
118 transcription factors
Source
Cell type
ADNP 2 datasets
ChIP K562 ENCFF492SKF 147 bp overlap
ChIP K562 ENCFF492SKF 445 bp overlap
AR 1 dataset
ChIP LNCaP GSE80256.AR.LNCaP 191 bp overlap
ARID1B 1 dataset
ChIP K-562 ENCSR822CCM.ARID1B.K-562 334 bp overlap
ARID3A 1 dataset
ChIP K-562 ENCSR000EFY.ARID3A.K-562 231 bp overlap
ATF1 4 datasets
ChIP K-562 ENCSR091GVJ.ATF1.K-562 445 bp overlap
ChIP K562 ENCFF817JQF 445 bp overlap
ChIP K562 ENCFF817JQF 362 bp overlap
ChIP K562 ENCFF980NSF 251 bp overlap
BCOR 1 dataset
ChIP K-562 ENCSR808AKZ.BCOR.K-562 316 bp overlap
BRD2 2 datasets
ChIP K-562 GSE140325.BRD2.K-562 107 bp overlap
ChIP K-562_DMSO GSE138084.BRD2.K-562_DMSO 148 bp overlap
BRD3 4 datasets
ChIP K-562_DMSO GSE138084.BRD3.K-562_DMSO 208 bp overlap
ChIP K-562_DMSO-IFNG GSE138084.BRD3.K-562_DMSO-IFNG 149 bp overlap
ChIP K-562_iBET-BD1-IFNG GSE138084.BRD3.K-562_iBET-BD1-IFNG 150 bp overlap
ChIP K-562_iBET-IFNG GSE138084.BRD3.K-562_iBET-IFNG 76 bp overlap
BRD4 7 datasets
ChIP CLL_patient2 GSE109411.BRD4.CLL_patient2 285 bp overlap
ChIP COLO-205 GSE73319.BRD4.COLO-205 445 bp overlap
ChIP K-562_DMSO GSE138084.BRD4.K-562_DMSO 440 bp overlap
ChIP K-562_DMSO-IFNG GSE138084.BRD4.K-562_DMSO-IFNG 94 bp overlap
ChIP K-562_iBET-BD2 GSE138084.BRD4.K-562_iBET-BD2 305 bp overlap
ChIP K-562_iBET-BD2-IFNG GSE138084.BRD4.K-562_iBET-BD2-IFNG 321 bp overlap
ChIP THP-1_iBET-BD2 GSE138084.BRD4.THP-1_iBET-BD2 320 bp overlap
CBFA2T3 2 datasets
ChIP K-562 ENCSR697YLJ.CBFA2T3.K-562 326 bp overlap
ChIP K562 ENCFF673OEZ 132 bp overlap
CEBPD 1 dataset
ChIP K-562 ENCSR000BVY.CEBPD.K-562 142 bp overlap
CHD4 3 datasets
ChIP K-562 ENCSR000ATL.CHD4.K-562 119 bp overlap
ChIP K562 ENCFF933NKI 313 bp overlap
ChIP K562 ENCFF933NKI 445 bp overlap
CREB1 1 dataset
ChIP K-562 ENCSR000BSO.CREB1.K-562 173 bp overlap
CREM 2 datasets
ChIP K-562 ENCSR077DKV.CREM.K-562 213 bp overlap
ChIP K562 ENCFF180STA 301 bp overlap
CTBP1 1 dataset
ChIP K-562 ENCSR201NQZ.CTBP1.K-562 277 bp overlap
CTNNB1 1 dataset
ChIP LS180_125 GSE31939.CTNNB1.LS180_125 113 bp overlap
CXXC5 2 datasets
ChIP K562 ENCFF497CZN 394 bp overlap
ChIP K562 ENCFF497CZN 391 bp overlap
DPF2 3 datasets
ChIP K-562 ENCSR219BXP.DPF2.K-562 307 bp overlap
ChIP K562 ENCFF739JDE 363 bp overlap
ChIP K562 ENCFF775HUO 258 bp overlap
E2F1 2 datasets
ChIP K-562 ENCSR720HUL.E2F1.K-562 429 bp overlap
ChIP K562 ENCFF191BFW 443 bp overlap
E4F1 2 datasets
ChIP K-562 ENCSR731LHZ.E4F1.K-562 383 bp overlap
ChIP K562 ENCFF622HMZ 187 bp overlap
ELF1 4 datasets
ChIP K-562 ENCSR502OEK.ELF1.K-562 288 bp overlap
ChIP K-562 ENCSR000BMD.ELF1.K-562 272 bp overlap
ChIP K562 ENCFF457KVR 387 bp overlap
ChIP K562 ENCFF496AKI 93 bp overlap
ELF2 1 dataset
ChIP K562 ENCFF787SME 391 bp overlap
ELF3 3 datasets
ChIP PDAC GSE64557.ELF3.PDAC 444 bp overlap
ChIP PDAC_KOKLF5 GSE64557.ELF3.PDAC_KOKLF5 445 bp overlap
ChIP PDAC_SHCTR GSE64557.ELF3.PDAC_SHCTR 398 bp overlap
ELF4 2 datasets
ChIP K-562 ENCSR638QHV.ELF4.K-562 313 bp overlap
ChIP K562 ENCFF454SBL 166 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 231 bp overlap
EP300 2 datasets
ChIP K-562 ENCSR000EGE.EP300.K-562 269 bp overlap
ChIP K562 ENCFF226VMS 311 bp overlap
ERG 7 datasets
ChIP VCaP_shARID1A GSE110655.ERG.VCaP_shARID1A 153 bp overlap
ChIP aortic-endothelial-cell_D21 GSE139377.ERG.aortic-endothelial-cell_D21 166 bp overlap
ChIP aortic-endothelial-cell_D24 GSE139377.ERG.aortic-endothelial-cell_D24 177 bp overlap
ChIP aortic-endothelial-cell_D39 GSE139377.ERG.aortic-endothelial-cell_D39 217 bp overlap
ChIP aortic-endothelial-cell_D4 GSE139377.ERG.aortic-endothelial-cell_D4 182 bp overlap
ChIP aortic-endothelial-cell_D40 GSE139377.ERG.aortic-endothelial-cell_D40 182 bp overlap
ChIP aortic-endothelial-cell_D47 GSE139377.ERG.aortic-endothelial-cell_D47 186 bp overlap
ESRRA 2 datasets
ChIP K-562 ENCSR486IFJ.ESRRA.K-562 323 bp overlap
ChIP K562 ENCFF968PEP 240 bp overlap
ETV1 2 datasets
ChIP K-562 ENCSR277DMR.ETV1.K-562 273 bp overlap
ChIP K562 ENCFF389WTI 295 bp overlap
FLI1 1 dataset
ChIP HUVEC-C GSE109695.FLI1.HUVEC-C 125 bp overlap
FOS 1 dataset
ChIP CFPAC-1 GSE119930.FOS.CFPAC-1 196 bp overlap
FOSL1 1 dataset
ChIP K562 ENCFF455MKD 79 bp overlap
FOXA2 1 dataset
ChIP DE DE-FOXA2-2 264 bp overlap
FOXM1 1 dataset
ChIP OE33 ERP013564.FOXM1.OE33 105 bp overlap
GABPA 1 dataset
ChIP K-562 ENCSR290MUH.GABPA.K-562 213 bp overlap
GABPB1 1 dataset
ChIP K-562 ENCSR138YYY.GABPB1.K-562 229 bp overlap
GATA1 4 datasets
ChIP K-562 GSE107726.GATA1.K-562 285 bp overlap
ChIP K-562 ENCSR000EFT.GATA1.K-562 190 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 149 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 153 bp overlap
GATA2 4 datasets
ChIP K-562 ENCSR000EWG.GATA2.K-562 116 bp overlap
ChIP K-562 ENCSR000BKM.GATA2.K-562 131 bp overlap
ChIP K562 ENCFF544PCK 251 bp overlap
ChIP TF1 GSE73207.GATA2.TF1 220 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 352 bp overlap
ChIP DE DE-GATA4-2 392 bp overlap
GATA6 8 datasets
ChIP DE DE-GATA6-1 301 bp overlap
ChIP DE DE-GATA6-2 374 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 286 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 282 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 322 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 314 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 308 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 313 bp overlap
GFI1B 1 dataset
ChIP K-562 ENCSR509GDT.GFI1B.K-562 177 bp overlap
GMEB1 1 dataset
ChIP K562 ENCFF705LHX 370 bp overlap
GTF2E2 1 dataset
ChIP K562 ENCFF741URT 445 bp overlap
HDAC1 2 datasets
ChIP K-562 ENCSR387UWP.HDAC1.K-562 342 bp overlap
ChIP K562 ENCFF968WBH 426 bp overlap
HDAC2 3 datasets
ChIP K-562 ENCSR075HTM.HDAC2.K-562 357 bp overlap
ChIP K-562 ENCSR893WSB.HDAC2.K-562 307 bp overlap
ChIP K-562 GSE140325.HDAC2.K-562 147 bp overlap
HDGF 1 dataset
ChIP K-562 ENCSR197ALX.HDGF.K-562 445 bp overlap
HMBOX1 3 datasets
ChIP K-562 ENCSR757IIU.HMBOX1.K-562 343 bp overlap
ChIP K562 ENCFF055GAZ 250 bp overlap
ChIP K562 ENCFF317JJX 248 bp overlap
HNRNPLL 2 datasets
ChIP K-562 ENCSR112RNT.HNRNPLL.K-562 183 bp overlap
ChIP K-562 GSE120104.HNRNPLL.K-562 184 bp overlap
ID3 1 dataset
ChIP K-562 ENCSR005NMT.ID3.K-562 311 bp overlap
IKZF1 3 datasets
ChIP K-562 ENCSR395HWC.IKZF1.K-562 361 bp overlap
ChIP K562 ENCFF348IBL 331 bp overlap
ChIP K562 ENCFF771OHZ 266 bp overlap
IRF1 1 dataset
ChIP K-562 ENCSR854MCV.IRF1.K-562 428 bp overlap
IRF2 2 datasets
ChIP CD34_ADULT GSE70660.IRF2.CD34_ADULT 162 bp overlap
ChIP K-562 ENCSR376WCJ.IRF2.K-562 229 bp overlap
JMJD1C 1 dataset
ChIP HL-60 GSE63484.JMJD1C.HL-60 164 bp overlap
JUNB 1 dataset
ChIP HAEC GSE89970.JUNB.HAEC 230 bp overlap
JUND 2 datasets
ChIP K-562 ENCSR000EGN.JUND.K-562 282 bp overlap
ChIP K562 ENCFF830LVJ 279 bp overlap
KDM1A 5 datasets
ChIP K-562 GSE117944.KDM1A.K-562 221 bp overlap
ChIP K562 ENCFF934ZRG 343 bp overlap
ChIP Kasumi-1_DMSO GSE71739.KDM1A.Kasumi-1_DMSO 180 bp overlap
ChIP NB4_DMSO GSE128528.KDM1A.NB4_DMSO 223 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.KDM1A.pancreatic-progenitor_PP1 233 bp overlap
KLF4 1 dataset
ChIP PDAC GSE64557.KLF4.PDAC 302 bp overlap
KLF6 2 datasets
ChIP K-562 ENCSR297CGF.KLF6.K-562 193 bp overlap
ChIP PDAC GSE64557.KLF6.PDAC 195 bp overlap
KMT2A 1 dataset
ChIP THP-1 GSE79899.KMT2A.THP-1 160 bp overlap
L3MBTL2 3 datasets
ChIP K-562 ENCSR530XQI.L3MBTL2.K-562 303 bp overlap
ChIP K562 ENCFF320EQC 443 bp overlap
ChIP K562 ENCFF320EQC 231 bp overlap
MAX 2 datasets
ChIP HCT116 ENCFF810LEN 51 bp overlap
ChIP K-562 ENCSR000EFV.MAX.K-562 210 bp overlap
MLLT1_FKB 1 dataset
ChIP MV4-11 GSE82116.MLLT1_FKB.MV4-11 274 bp overlap
MTA3 1 dataset
ChIP K-562 ENCSR180NCY.MTA3.K-562 391 bp overlap
NBN 1 dataset
ChIP K-562 ENCSR085QEV.NBN.K-562 279 bp overlap
NCOR1 3 datasets
ChIP K-562 ENCSR798ILC.NCOR1.K-562 282 bp overlap
ChIP K562 ENCFF866HRM 426 bp overlap
ChIP LS180 GSE39277.NCOR1.LS180 76 bp overlap
NEUROD1 1 dataset
ChIP K-562 ENCSR986CDX.NEUROD1.K-562 144 bp overlap
NFE2 2 datasets
ChIP K-562 ENCSR000FCC.NFE2.K-562 207 bp overlap
ChIP K562 ENCFF163BSI 260 bp overlap
NFE2L2 1 dataset
ChIP K-562 ENCSR485GKE.NFE2L2.K-562 202 bp overlap
NFYB 1 dataset
ChIP K-562 GSE26439.NFYB.K-562 226 bp overlap
NR2C1 1 dataset
ChIP K562 ENCFF568JLK 382 bp overlap
NR2F1 2 datasets
ChIP K-562 ENCSR970NKQ.NR2F1.K-562 376 bp overlap
ChIP K562 ENCFF221HJH 305 bp overlap
NR2F2 2 datasets
ChIP K-562 ENCSR000BRS.NR2F2.K-562 263 bp overlap
ChIP K562 ENCFF004YPK 229 bp overlap
NR2F6 2 datasets
ChIP K-562 ENCSR707QWA.NR2F6.K-562 297 bp overlap
ChIP K562 ENCFF674RQA 244 bp overlap
PAX5 1 dataset
ChIP GM12891 ENCSR000BJH.PAX5.GM12891 166 bp overlap
PHIP 3 datasets
ChIP HCT-116_MLL1-KO__ab833 GSE101646.PHIP.HCT-116_MLL1-KO__ab833 349 bp overlap
ChIP HCT-116_ab833 GSE101646.PHIP.HCT-116_ab833 445 bp overlap
ChIP HCT-116_ab834 GSE101646.PHIP.HCT-116_ab834 288 bp overlap
PKNOX1 1 dataset
ChIP K-562 ENCSR115SMW.PKNOX1.K-562 158 bp overlap
PML 1 dataset
ChIP K-562 ENCSR000BQY.PML.K-562 218 bp overlap
POLR2A 2 datasets
ChIP Peyer's patch ENCFF767HVN 118 bp overlap
ChIP stomach ENCFF820WZN 322 bp overlap
RCOR1 1 dataset
ChIP K562 ENCFF216EEJ 297 bp overlap
RELA 5 datasets
ChIP HAEC_TNFa_4h GSE89970.RELA.HAEC_TNFa_4h 147 bp overlap
ChIP K-562 ENCSR772EEN.RELA.K-562 346 bp overlap
ChIP aortic-endothelial-cell_IL1B_D31 GSE139377.RELA.aortic-endothelial-cell_IL1B_D31 137 bp overlap
ChIP aortic-endothelial-cell_IL1B_D39 GSE139377.RELA.aortic-endothelial-cell_IL1B_D39 134 bp overlap
ChIP aortic-endothelial-cell_IL1B_D7 GSE139377.RELA.aortic-endothelial-cell_IL1B_D7 173 bp overlap
REST 2 datasets
ChIP K-562 ENCSR000BMW.REST.K-562 144 bp overlap
ChIP K562 ENCFF430APM 231 bp overlap
SHOX2 1 dataset
ChIP K-562 ENCSR184IQF.SHOX2.K-562 226 bp overlap
SIN3A 1 dataset
ChIP HCT116 ENCFF203YBB 61 bp overlap
SMAD3 1 dataset
ChIP NCI-H441 GSE51509.SMAD3.NCI-H441 131 bp overlap
SMAD4 2 datasets
ChIP K562 ENCFF628RBP 445 bp overlap
ChIP K562 ENCFF628RBP 293 bp overlap
SMARCA4 2 datasets
ChIP K-562 ENCSR587OQL.SMARCA4.K-562 445 bp overlap
ChIP endometrial-epithelial-cells_KO GSE106660.SMARCA4.endometrial-epithelial-cells_KO 429 bp overlap
SMARCA5 1 dataset
ChIP K-562 ENCSR895HSJ.SMARCA5.K-562 445 bp overlap
SMARCE1 1 dataset
ChIP K-562 ENCSR157TCS.SMARCE1.K-562 386 bp overlap
SPI1 8 datasets
ChIP CD34_FETAL GSE70660.SPI1.CD34_FETAL 178 bp overlap
ChIP GM12891 ENCFF563IUT 216 bp overlap
ChIP GM12891 ENCSR000BIJ.SPI1.GM12891 181 bp overlap
ChIP K-562 GSE70482.SPI1.K-562 251 bp overlap
ChIP K-562 ENCSR000BGW.SPI1.K-562 243 bp overlap
ChIP K-562_NABUT GSE74999.SPI1.K-562_NABUT 215 bp overlap
ChIP K-562_SAHA GSE74999.SPI1.K-562_SAHA 163 bp overlap
ChIP K562 ENCFF410ORC 205 bp overlap
SREBP2 2 datasets
ChIP monocyte GSE129202.SREBP2.monocyte 214 bp overlap
ChIP monocyte_TNF GSE129202.SREBP2.monocyte_TNF 354 bp overlap
SRF 6 datasets
ChIP HCT-116 ENCSR000BSC.SRF.HCT-116 224 bp overlap
ChIP HCT116 ENCFF497JOF 344 bp overlap
ChIP K-562 ENCSR582IAO.SRF.K-562 220 bp overlap
ChIP K-562 ENCSR000BLK.SRF.K-562 180 bp overlap
ChIP K562 ENCFF664RPC 201 bp overlap
ChIP K562 ENCFF766EOO 337 bp overlap
STAT1 2 datasets
ChIP CD14_INFG_LPS GSE43036.STAT1.CD14_INFG_LPS 143 bp overlap
ChIP CD14_LPS GSE43036.STAT1.CD14_LPS 132 bp overlap
STAT1_pS727 1 dataset
ChIP SET-2 GSE100566.STAT1_pS727.SET-2 267 bp overlap
TAL1 4 datasets
ChIP K-562 ENCSR000EHB.TAL1.K-562 194 bp overlap
ChIP K-562 GSE107726.TAL1.K-562 199 bp overlap
ChIP K562 ENCFF620GMX 316 bp overlap
ChIP K562 ENCFF661CCK 277 bp overlap
TCF3 1 dataset
ChIP K-562 ENCSR970OJY.TCF3.K-562 196 bp overlap
TP53 1 dataset
ChIP hESC_DAMAGED GSE39912.TP53.hESC_DAMAGED 204 bp overlap
USF2 1 dataset
ChIP K562 ENCFF306QPU 85 bp overlap
VDR 2 datasets
ChIP THP-1_1d_1-25-OH-2D3 GSE89431.VDR.THP-1_1d_1-25-OH-2D3 281 bp overlap
ChIP THP-1_EtOH_1d GSE89431.VDR.THP-1_EtOH_1d 162 bp overlap
ZBTB12 1 dataset
ChIP K-562 ENCSR172OSX.ZBTB12.K-562 295 bp overlap
ZBTB2 1 dataset
ChIP K-562 ENCSR230PTV.ZBTB2.K-562 247 bp overlap
ZBTB33 1 dataset
ChIP K562 ENCFF427SDV 57 bp overlap
ZBTB40 3 datasets
ChIP K-562 ENCSR237VLT.ZBTB40.K-562 259 bp overlap
ChIP K562 ENCFF521DSV 359 bp overlap
ChIP K562 ENCFF521DSV 155 bp overlap
ZBTB7A 2 datasets
ChIP K-562 GSE103445.ZBTB7A.K-562 233 bp overlap
ChIP K-562 ENCSR000BME.ZBTB7A.K-562 101 bp overlap
ZFP36 1 dataset
ChIP K-562 ENCSR776CYN.ZFP36.K-562 148 bp overlap
ZFP91 3 datasets
ChIP K-562 ENCSR898XMH.ZFP91.K-562 383 bp overlap
ChIP K562 ENCFF501CDP 177 bp overlap
ChIP K562 ENCFF501CDP 216 bp overlap
ZFX 4 datasets
ChIP K-562 ENCSR920ASP.ZFX.K-562 204 bp overlap
ChIP K562 ENCFF169LZT 445 bp overlap
ChIP K562 ENCFF536AJO 445 bp overlap
ChIP K562 ENCFF536AJO 422 bp overlap
ZKSCAN8 1 dataset
ChIP K562 ENCFF387ETI 445 bp overlap
ZMYM3 2 datasets
ChIP K-562 ENCSR102KIN.ZMYM3.K-562 299 bp overlap
ChIP K-562_Ab_JH39-2-2F10 GSE97661.ZMYM3.K-562_Ab_JH39-2-2F10 287 bp overlap
ZNF134 1 dataset
ChIP K-562 ENCSR553NTC.ZNF134.K-562 246 bp overlap
ZNF239 2 datasets
ChIP K-562 ENCSR606KTL.ZNF239.K-562 241 bp overlap
ChIP K562 ENCFF703IKI 331 bp overlap
ZNF24 8 datasets
ChIP K-562 ENCSR099NCH.ZNF24.K-562 445 bp overlap
ChIP K-562 ENCSR695EQB.ZNF24.K-562 445 bp overlap
ChIP K-562 ENCSR385AHH.ZNF24.K-562 442 bp overlap
ChIP K-562 ENCSR117WTM.ZNF24.K-562 413 bp overlap
ChIP K562 ENCFF497GLV 112 bp overlap
ChIP K562 ENCFF615YYW 445 bp overlap
ChIP K562 ENCFF781QQQ 378 bp overlap
ChIP K562 ENCFF877JCX 434 bp overlap
ZNF281 1 dataset
ChIP K562 ENCFF594VNM 429 bp overlap
ZNF41 1 dataset
ChIP K-562 ENCSR235PYI.ZNF41.K-562 208 bp overlap
ZNF449 1 dataset
ChIP K562 ENCFF038VEZ 305 bp overlap
ZNF592 2 datasets
ChIP K-562 ENCSR249BHQ.ZNF592.K-562 445 bp overlap
ChIP K562 ENCFF547OSS 445 bp overlap
ZNF629 1 dataset
ChIP Hep-G2 ENCSR363ASY.ZNF629.Hep-G2 155 bp overlap
ZNF639 2 datasets
ChIP K562 ENCFF271FQR 445 bp overlap
ChIP K562 ENCFF271FQR 365 bp overlap
ZNF79 1 dataset
ChIP K-562 ENCSR995FUM.ZNF79.K-562 208 bp overlap
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