chr9 : 120,924,795 120,925,169
374 bp 113 TFs 1 linked gene
This 374 bp open chromatin element is linked to TRAF1 and is bound by 113 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
TRAF1 4.0 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:120,919,795 – 120,930,169
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
113 transcription factors
Source
Cell type
AFF4 1 dataset
ChIP CD4_Th1_DMSO GSE62482.AFF4.CD4_Th1_DMSO 374 bp overlap
AR 2 datasets
ChIP A-375 GSE116189.AR.A-375 276 bp overlap
ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 198 bp overlap
ARNT 1 dataset
ChIP GM12878 ENCSR590KEQ.ARNT.GM12878 117 bp overlap
ASH2L 1 dataset
ChIP GM12878 ENCSR849WCQ.ASH2L.GM12878 317 bp overlap
ATF7 2 datasets
ChIP GM12878 ENCFF037PYH 221 bp overlap
ChIP GM12878 ENCSR014YCR.ATF7.GM12878 286 bp overlap
BACH2 1 dataset
ChIP B-cell_IL2 GSE102460.BACH2.B-cell_IL2 140 bp overlap
BCLAF1 1 dataset
ChIP GM12878 ENCFF306JRM 315 bp overlap
BHLHE40 6 datasets
ChIP GM12878 ENCFF010ZUU 161 bp overlap
ChIP GM12878 ENCFF521IZR 140 bp overlap
ChIP GM12878 ENCSR987MTA.BHLHE40.GM12878 225 bp overlap
ChIP GM12878 ENCSR517QHU.BHLHE40.GM12878 173 bp overlap
ChIP GM12878 ENCSR000DZJ.BHLHE40.GM12878 100 bp overlap
ChIP IMR-90 ENCSR957KYB.BHLHE40.IMR-90 90 bp overlap
BMI1 1 dataset
ChIP GM12878 ENCSR469WII.BMI1.GM12878 264 bp overlap
BORCS8-MEF2B,MEF2B 1 dataset
ChIP GM12878 ENCFF427QAI 351 bp overlap
BRD2 5 datasets
ChIP MDA-MB-231_BAZ2AsiRNA_JQ1 GSE116879.BRD2.MDA-MB-231_BAZ2AsiRNA_JQ1 314 bp overlap
ChIP MDA-MB-231_BAZ2BsiRNA GSE116879.BRD2.MDA-MB-231_BAZ2BsiRNA 317 bp overlap
ChIP MDA-MB-231_JQ1_MGSK2801 GSE116879.BRD2.MDA-MB-231_JQ1_MGSK2801 129 bp overlap
ChIP MDA-MB-231_JQ1_MGSK2801_rDNA GSE116879.BRD2.MDA-MB-231_JQ1_MGSK2801_rDNA 129 bp overlap
ChIP MDA-MB-231_NTsiRNA_JQ1 GSE116879.BRD2.MDA-MB-231_NTsiRNA_JQ1 374 bp overlap
BRD4 19 datasets
ChIP CD4_Th1_DMSO GSE62482.BRD4.CD4_Th1_DMSO 374 bp overlap
ChIP CHL-1 GSE95585.BRD4.CHL-1 164 bp overlap
ChIP CLL_patient4 GSE109411.BRD4.CLL_patient4 374 bp overlap
ChIP CLL_patient4_4h_CpG_BET GSE109411.BRD4.CLL_patient4_4h_CpG_BET 374 bp overlap
ChIP COLO-741 GSE73319.BRD4.COLO-741 209 bp overlap
ChIP GM15850_DMSO GSE99402.BRD4.GM15850_DMSO 374 bp overlap
ChIP GM15850_Syn-TEF1 GSE99402.BRD4.GM15850_Syn-TEF1 183 bp overlap
ChIP MDA-MB-231_DMSO GSE116879.BRD4.MDA-MB-231_DMSO 280 bp overlap
ChIP MDA-MB-231_DMSO_rDNA GSE116879.BRD4.MDA-MB-231_DMSO_rDNA 280 bp overlap
ChIP MDA-MB-231_JQ1 GSE116879.BRD4.MDA-MB-231_JQ1 233 bp overlap
ChIP MDA-MB-231_JQ1-neg_L GSE136151.BRD4.MDA-MB-231_JQ1-neg_L 58 bp overlap
ChIP MDA-MB-231_JQ1-neg_S_3f GSE136151.BRD4.MDA-MB-231_JQ1-neg_S_3f 259 bp overlap
ChIP MDA-MB-231_JQ1_MGSK2801 GSE116879.BRD4.MDA-MB-231_JQ1_MGSK2801 294 bp overlap
ChIP MDA-MB-231_JQ1_MGSK2801_rDNA GSE116879.BRD4.MDA-MB-231_JQ1_MGSK2801_rDNA 294 bp overlap
ChIP MDA-MB-231_JQ1_rDNA GSE116879.BRD4.MDA-MB-231_JQ1_rDNA 233 bp overlap
ChIP MDA-MB-231_MGSK2801 GSE116879.BRD4.MDA-MB-231_MGSK2801 329 bp overlap
ChIP MDA-MB-231_MGSK2801_rDNA GSE116879.BRD4.MDA-MB-231_MGSK2801_rDNA 329 bp overlap
ChIP MM1-S GSE43743.BRD4.MM1-S 68 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 365 bp overlap
BRD9 2 datasets
ChIP MDA-MB-231_JQ1_MGSK2801 GSE116879.BRD9.MDA-MB-231_JQ1_MGSK2801 349 bp overlap
ChIP MDA-MB-231_MGSK2801 GSE116879.BRD9.MDA-MB-231_MGSK2801 365 bp overlap
CBFB 2 datasets
ChIP GM12878 ENCFF056JUS 236 bp overlap
ChIP GM12878 ENCSR860UHK.CBFB.GM12878 305 bp overlap
CDK9 2 datasets
ChIP A-375_A771726 GSE68052.CDK9.A-375_A771726 50 bp overlap
ChIP A-375_DMSO GSE57431.CDK9.A-375_DMSO 115 bp overlap
CDKN1B 3 datasets
ChIP MDA-BoM-1833_shp27 GSE112444.CDKN1B.MDA-BoM-1833_shp27 177 bp overlap
ChIP MDA-MB-231 GSE112444.CDKN1B.MDA-MB-231 251 bp overlap
ChIP MDA-MB-231_p27CK-DD GSE112444.CDKN1B.MDA-MB-231_p27CK-DD 315 bp overlap
CHD2 2 datasets
ChIP GM12878 ENCFF697XCL 307 bp overlap
ChIP GM12878 ENCSR000DZR.CHD2.GM12878 130 bp overlap
COMMD3-BMI1,BMI1 1 dataset
ChIP GM12878 ENCFF249AMT 248 bp overlap
CREB1 1 dataset
ChIP GM12878 ENCSR000BUF.CREB1.GM12878 195 bp overlap
CREM 2 datasets
ChIP GM12878 ENCFF391UGE 242 bp overlap
ChIP GM12878 ENCSR839XZU.CREM.GM12878 124 bp overlap
DPF2 2 datasets
ChIP GM12878 ENCFF681AJV 249 bp overlap
ChIP K562 ENCFF739JDE 123 bp overlap
E2F1 1 dataset
ChIP MDA-MB-231 GSE95303.E2F1.MDA-MB-231 235 bp overlap
E2F8 2 datasets
ChIP GM12878 ENCFF910KAC 161 bp overlap
ChIP GM12878 ENCSR793HVL.E2F8.GM12878 163 bp overlap
EBF1 2 datasets
ChIP GM12878 ENCFF167CZS 184 bp overlap
ChIP GM12878 ENCFF813OXE 136 bp overlap
EED 1 dataset
ChIP GM12878 ENCFF266FYW 374 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 154 bp overlap
EP300 2 datasets
ChIP GM12878 ENCFF039QRE 200 bp overlap
ChIP GM12878 ENCFF242HCG 187 bp overlap
ESR1 1 dataset
ChIP MDA-MB-231_LQ_45min GSE95121.ESR1.MDA-MB-231_LQ_45min 107 bp overlap
ESRRA 2 datasets
ChIP SK-BR-3_EGF GSE81651.ESRRA.SK-BR-3_EGF 309 bp overlap
ChIP SK-BR-3_HRG GSE81651.ESRRA.SK-BR-3_HRG 374 bp overlap
ETS1 1 dataset
ChIP 786-O GSE86092.ETS1.786-O 253 bp overlap
FOS 1 dataset
ChIP CFPAC-1 GSE119930.FOS.CFPAC-1 116 bp overlap
FOXA1 1 dataset
ChIP CFPAC-1 GSE119930.FOXA1.CFPAC-1 178 bp overlap
FOXA2 3 datasets
ChIP CFPAC-1_EV GSE119930.FOXA2.CFPAC-1_EV 187 bp overlap
ChIP DE DE-FOXA2-1 245 bp overlap
ChIP DE DE-FOXA2-2 366 bp overlap
GATA4 1 dataset
ChIP DE DE-GATA4-2 231 bp overlap
GATA6 1 dataset
ChIP DE DE-GATA6-2 292 bp overlap
ID3 1 dataset
ChIP K-562 ENCSR005NMT.ID3.K-562 296 bp overlap
IKZF1 3 datasets
ChIP GM12878 ENCFF753XDO 278 bp overlap
ChIP GM12878 ENCFF824TGK 360 bp overlap
ChIP GM12878 ENCFF824TGK 245 bp overlap
IKZF2 5 datasets
ChIP GM12878 ENCFF238LYK 347 bp overlap
ChIP GM12878 ENCFF918AID 374 bp overlap
ChIP GM12878 ENCFF918AID 280 bp overlap
ChIP GM12878 ENCSR680UQE.IKZF2.GM12878 372 bp overlap
ChIP GM12878 ENCSR822AHX.IKZF2.GM12878 213 bp overlap
IRF4 2 datasets
ChIP GM12878 ENCSR000BGY.IRF4.GM12878 167 bp overlap
ChIP T-cell GSE136853.IRF4.T-cell 374 bp overlap
JUN 5 datasets
ChIP 786-O GSE86092.JUN.786-O 374 bp overlap
ChIP MDA-BoM-1833 GSE112444.JUN.MDA-BoM-1833 281 bp overlap
ChIP MDA-BoM-1833_shp27 GSE112444.JUN.MDA-BoM-1833_shp27 198 bp overlap
ChIP MDA-MB-231 GSE112444.JUN.MDA-MB-231 307 bp overlap
ChIP T-cell GSE136853.JUN.T-cell 264 bp overlap
JUNB 1 dataset
ChIP CD4 GSE116695.JUNB.CD4 64 bp overlap
KDM3A 1 dataset
ChIP 22Rv1_pLKO GSE109748.KDM3A.22Rv1_pLKO 152 bp overlap
KDM5B 1 dataset
ChIP SUM159 GSE46055.KDM5B.SUM159 173 bp overlap
KLF6 1 dataset
ChIP 786-M1A GSE115749.KLF6.786-M1A 329 bp overlap
KMT2A 1 dataset
ChIP blood_cord GSE83671.KMT2A.blood_cord 374 bp overlap
LARP7 1 dataset
ChIP GM12878 ENCFF513CEX 367 bp overlap
MAF 2 datasets
ChIP CD4_Th1 GSE72266.MAF.CD4_Th1 324 bp overlap
ChIP lymphocyte_Th17_IL10+_Day5 GSE101389.MAF.lymphocyte_Th17_IL10+_Day5 275 bp overlap
MAX 1 dataset
ChIP MDA-MB-231 GSE127192.MAX.MDA-MB-231 90 bp overlap
MED1 3 datasets
ChIP HUVEC-C_siERG GSE124892.MED1.HUVEC-C_siERG 319 bp overlap
ChIP hMSC-TERT4_4h GSE104537.MED1.hMSC-TERT4_4h 146 bp overlap
ChIP hMSC-TERT4_adipocyte-4H GSE113253.MED1.hMSC-TERT4_adipocyte-4H 99 bp overlap
MEF2B 1 dataset
ChIP GM12878 ENCSR177VFS.MEF2B.GM12878 203 bp overlap
MLLT1 1 dataset
ChIP GM12878 ENCFF995GXC 374 bp overlap
MTA2 2 datasets
ChIP GM12878 ENCFF615CWQ 172 bp overlap
ChIP GM12878 ENCSR293QAR.MTA2.GM12878 374 bp overlap
MTA3 1 dataset
ChIP GM12878 ENCSR000BRH.MTA3.GM12878 374 bp overlap
MYC 2 datasets
ChIP P493-6 GSE77061.MYC.P493-6 144 bp overlap
ChIP P493-6 GSE77061.MYC.P493-6 90 bp overlap
NBN 1 dataset
ChIP GM12878 ENCSR278SQL.NBN.GM12878 374 bp overlap
NELFE 1 dataset
ChIP K-562_NHS GSE112379.NELFE.K-562_NHS 152 bp overlap
NFIC 1 dataset
ChIP GM12878 ENCSR000BRN.NFIC.GM12878 65 bp overlap
NFYB 1 dataset
ChIP GM12878 ENCFF474DNH 278 bp overlap
NR2C1 2 datasets
ChIP GM12878 ENCFF101ELO 184 bp overlap
ChIP GM12878 ENCSR784VIQ.NR2C1.GM12878 111 bp overlap
NR2F1 2 datasets
ChIP GM12878 ENCFF273VKX 189 bp overlap
ChIP GM12878 ENCSR514VYD.NR2F1.GM12878 312 bp overlap
NR3C1 3 datasets
ChIP BEAS-2B_TNF_IA1 GSE125623.NR3C1.BEAS-2B_TNF_IA1 374 bp overlap
ChIP BEAS-2B_Veh_IA1 GSE125623.NR3C1.BEAS-2B_Veh_IA1 84 bp overlap
ChIP MDA-MB-231 GSE152203.NR3C1.MDA-MB-231 154 bp overlap
PAX5 3 datasets
ChIP GM12878 ENCFF482PUW 159 bp overlap
ChIP GM12878 ENCSR000BHJ.PAX5.GM12878 374 bp overlap
ChIP GM12878 ENCSR000BHD.PAX5.GM12878 374 bp overlap
PGR 1 dataset
ChIP MCF-7_PROG GSE68355.PGR.MCF-7_PROG 177 bp overlap
PML 1 dataset
ChIP GM12878 ENCSR000BQM.PML.GM12878 374 bp overlap
POLR2A 15 datasets
ChIP GM12878 ENCFF263VRI 255 bp overlap
ChIP GM12878 ENCFF263VRI 255 bp overlap
ChIP GM12878 ENCFF412KAE 374 bp overlap
ChIP GM12878 ENCFF631ERR 313 bp overlap
ChIP GM12878 ENCFF899QYP 94 bp overlap
ChIP GM12891 ENCFF127ICP 341 bp overlap
ChIP GM12891 ENCFF379FCI 246 bp overlap
ChIP GM12892 ENCFF245LYF 374 bp overlap
ChIP GM12892 ENCFF506PGQ 315 bp overlap
ChIP GM12892 ENCFF506PGQ 90 bp overlap
ChIP GM15510 ENCFF880HVJ 163 bp overlap
ChIP GM18505 ENCFF311CYB 374 bp overlap
ChIP GM18526 ENCFF599EPS 159 bp overlap
ChIP GM18951 ENCFF079KKO 125 bp overlap
ChIP GM19193 ENCFF599VTO 214 bp overlap
POU2F2 2 datasets
ChIP GM12891 ENCFF166YPP 257 bp overlap
ChIP GM12891 ENCSR000BII.POU2F2.GM12891 131 bp overlap
RAD21 1 dataset
ChIP GM12878 ENCFF101UQZ 119 bp overlap
RAD51 2 datasets
ChIP GM12878 ENCFF916JXQ 190 bp overlap
ChIP GM12878 ENCSR482TWQ.RAD51.GM12878 114 bp overlap
RB1 1 dataset
ChIP GM12878 ENCSR785OKZ.RB1.GM12878 212 bp overlap
RBPJ 1 dataset
ChIP NHEK GSE29498.RBPJ.NHEK 122 bp overlap
RCOR1 1 dataset
ChIP GM12878 ENCFF982CRX 97 bp overlap
RELA 6 datasets
ChIP 786-O GSE86092.RELA.786-O 339 bp overlap
ChIP HeLa-B2_P65KD_TA_TNFA GSE24518.RELA.HeLa-B2_P65KD_TA_TNFA 72 bp overlap
ChIP HeLa-B2_TA_TNFA GSE24518.RELA.HeLa-B2_TA_TNFA 76 bp overlap
ChIP HeLa-B2_TNFA GSE24518.RELA.HeLa-B2_TNFA 115 bp overlap
ChIP aortic-endothelial-cell_IL1B_D8 GSE139377.RELA.aortic-endothelial-cell_IL1B_D8 52 bp overlap
ChIP aortic-endothelial-cell_IL1B_D9 GSE139377.RELA.aortic-endothelial-cell_IL1B_D9 102 bp overlap
RELB 1 dataset
ChIP GM12878 ENCFF217ADF 277 bp overlap
SKIL 2 datasets
ChIP GM12878 ENCFF171OVM 275 bp overlap
ChIP GM12878 ENCSR212YKD.SKIL.GM12878 374 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 350 bp overlap
SMAD3 1 dataset
ChIP NCI-H441_SIITTF1 GSE51509.SMAD3.NCI-H441_SIITTF1 173 bp overlap
SMARCA4 1 dataset
ChIP A-549_AG15678 GSE132290.SMARCA4.A-549_AG15678 66 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 374 bp overlap
SP1 1 dataset
ChIP GM12878 ENCSR000BHK.SP1.GM12878 194 bp overlap
SREBP2 1 dataset
ChIP monocyte GSE129202.SREBP2.monocyte 101 bp overlap
SRF 2 datasets
ChIP GM12878 ENCFF878IIX 159 bp overlap
ChIP GM12878 ENCSR041XML.SRF.GM12878 110 bp overlap
SS18 1 dataset
ChIP SYO-1 GSE108025.SS18.SYO-1 374 bp overlap
STAT1 1 dataset
ChIP CD14_INFG_LPS GSE43036.STAT1.CD14_INFG_LPS 129 bp overlap
STAT3 3 datasets
ChIP MDA-MB-231 GSE152203.STAT3.MDA-MB-231 374 bp overlap
ChIP MDA-MB-231_EtOH GSE85579.STAT3.MDA-MB-231_EtOH 374 bp overlap
ChIP NCI-H358 GSE79707.STAT3.NCI-H358 374 bp overlap
TAF1 1 dataset
ChIP GM12878 ENCSR000BGS.TAF1.GM12878 129 bp overlap
TARDBP 1 dataset
ChIP GM12878 ENCFF866POT 299 bp overlap
TBP 2 datasets
ChIP GM12878 ENCFF571OXR 203 bp overlap
ChIP GM12878 ENCSR000DZZ.TBP.GM12878 104 bp overlap
TBX21 3 datasets
ChIP CD4_Th1 GSE62482.TBX21.CD4_Th1 198 bp overlap
ChIP GM12878 ENCFF951HUW 238 bp overlap
ChIP Th1_CD3-CD28_donor2 GSE81881.TBX21.Th1_CD3-CD28_donor2 161 bp overlap
TCF12 2 datasets
ChIP GM12878 ENCFF433DMU 136 bp overlap
ChIP GM12878 ENCSR725VFL.TCF12.GM12878 121 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 175 bp overlap
TP53 2 datasets
ChIP MDA-MB-231 GSE95303.TP53.MDA-MB-231 292 bp overlap
ChIP lymphocyte_45_Nutlin GSE110368.TP53.lymphocyte_45_Nutlin 92 bp overlap
ZBED1 2 datasets
ChIP GM12878 ENCFF007OSW 235 bp overlap
ChIP GM12878 ENCFF007OSW 230 bp overlap
ZBTB33 2 datasets
ChIP K-562 ENCSR876GXA.ZBTB33.K-562 101 bp overlap
ChIP K562 ENCFF427SDV 204 bp overlap
ZFP36 1 dataset
ChIP GM12878 ENCFF234WRG 154 bp overlap
ZMYND8 1 dataset
ChIP MDA-MB-231 GSE108833.ZMYND8.MDA-MB-231 156 bp overlap
ZNF217 3 datasets
ChIP GM12878 ENCFF978IGL 286 bp overlap
ChIP GM12878 ENCFF978IGL 193 bp overlap
ChIP GM12878 ENCSR764CZW.ZNF217.GM12878 58 bp overlap
ZNF24 1 dataset
ChIP GM12878 ENCSR072PWP.ZNF24.GM12878 81 bp overlap
ZNF341 1 dataset
ChIP HIES_T-cell_anti-CD3_anti-CD28 GSE113194.ZNF341.HIES_T-cell_anti-CD3_anti-CD28 88 bp overlap
ZNF592 2 datasets
ChIP GM12878 ENCFF818ABS 285 bp overlap
ChIP GM12878 ENCSR173ZVL.ZNF592.GM12878 223 bp overlap
ZNF687 2 datasets
ChIP GM12878 ENCFF233SGE 238 bp overlap
ChIP GM12878 ENCFF233SGE 136 bp overlap
ZNF711 1 dataset
ChIP HEK293T GSE145160.ZNF711.HEK293T 374 bp overlap
ZNF770 1 dataset
ChIP HEK293 GSE76494.ZNF770.HEK293 152 bp overlap
ZNF92 1 dataset
ChIP retina_pigment GSE60024.ZNF92.retina_pigment 56 bp overlap