chr7 : 143,283,335 143,284,200
865 bp 153 TFs 3 linked genes
This 865 bp open chromatin element is linked to TMEM139, TMEM139-AS1, and CASP2 and is bound by 153 transcription factors.
Linked Genes
3 genes
Distance
Gene Expression Dist. to TSS Distance Link type
TMEM139 745 bp At TSS Proximity
TMEM139-AS1 3.8 kb Proximal Proximity
CASP2 4.2 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr7:143,278,335 – 143,289,200
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
153 transcription factors
Source
Cell type
ARID2 1 dataset
ChIP Hep-G2 GSE69566.ARID2.Hep-G2 293 bp overlap
ARID4B 1 dataset
ChIP HepG2 ENCFF519OXJ 110 bp overlap
ASH2L 1 dataset
ChIP Hep-G2 ENCSR508LMH.ASH2L.Hep-G2 102 bp overlap
BCOR 1 dataset
ChIP WA01 GSE104690.BCOR.WA01 127 bp overlap
BORCS8-MEF2B,MEF2B 1 dataset
ChIP GM12878 ENCFF427QAI 581 bp overlap
BRD3 1 dataset
ChIP K-562_iBET-BD2-IFNG GSE138084.BRD3.K-562_iBET-BD2-IFNG 206 bp overlap
BRD4 7 datasets
ChIP COLO-205 GSE73319.BRD4.COLO-205 759 bp overlap
ChIP Jurkat GSE83777.BRD4.Jurkat 441 bp overlap
ChIP KOPT-K1 GSE54379.BRD4.KOPT-K1 288 bp overlap
ChIP SW480 GSE73319.BRD4.SW480 323 bp overlap
ChIP SW480 GSE110473.BRD4.SW480 620 bp overlap
ChIP SW480 GSE73319.BRD4.SW480 243 bp overlap
ChIP SW480_16h_TNF-a GSE110473.BRD4.SW480_16h_TNF-a 514 bp overlap
CCAR2 1 dataset
ChIP Hep-G2 ENCSR247XFV.CCAR2.Hep-G2 161 bp overlap
CDK9 2 datasets
ChIP MOLT-4_DMSO GSE79288.CDK9.MOLT-4_DMSO 176 bp overlap
ChIP MOLT-4_JQ1 GSE79288.CDK9.MOLT-4_JQ1 141 bp overlap
CDX2 2 datasets
ChIP LS180 GSE31939.CDX2.LS180 290 bp overlap
ChIP LS180_125 GSE31939.CDX2.LS180_125 239 bp overlap
CTCF 2 datasets
Motif DE_12h DE_12h-CTCF_MA1930.2 33 bp overlap
Motif ES_0h ES_0h-CTCF_MA1930.2 33 bp overlap
CTNNB1 1 dataset
ChIP LS180_125 GSE31939.CTNNB1.LS180_125 67 bp overlap
EBF1 5 datasets
ChIP ASC GSE54889.EBF1.ASC 220 bp overlap
ChIP GM12878 ENCFF813OXE 265 bp overlap
ChIP LCL GSE75503.EBF1.LCL 172 bp overlap
ChIP MUTUL GSE75503.EBF1.MUTUL 452 bp overlap
ChIP NALM-6 GSE126300.EBF1.NALM-6 181 bp overlap
EEA1 1 dataset
ChIP HepG2 ENCFF958VUU 355 bp overlap
EGR1 1 dataset
ChIP Hep-G2 ENCSR026GSW.EGR1.Hep-G2 128 bp overlap
EGR2 1 dataset
ChIP HEK293 ENCFF336LFH 425 bp overlap
ELF3 2 datasets
ChIP PDAC GSE64557.ELF3.PDAC 479 bp overlap
ChIP PDAC_SHCTR GSE64557.ELF3.PDAC_SHCTR 464 bp overlap
ERF 1 dataset
ChIP HepG2 ENCFF647PIT 65 bp overlap
ESR1 2 datasets
ChIP endometrioid-adenocarcinoma_tumor_2 GSE94031.ESR1.endometrioid-adenocarcinoma_tumor_2 294 bp overlap
ChIP primary-endometrium-cancer_E1_DSG GSE114737.ESR1.primary-endometrium-cancer_E1_DSG 496 bp overlap
ETS1 1 dataset
ChIP CTV-1_DSG GSE128835.ETS1.CTV-1_DSG 219 bp overlap
ETV1 1 dataset
Motif DE_12h DE_12h-ETV1_MA0761.3 9 bp overlap
Erg 1 dataset
Motif DE_12h DE_12h-Erg_MA0474.4 10 bp overlap
GABPA 1 dataset
Motif DE_12h DE_12h-GABPA_MA0062.4 10 bp overlap
GATA3 1 dataset
ChIP Jurkat GSE76181.GATA3.Jurkat 177 bp overlap
GLYR1 1 dataset
ChIP HepG2 ENCFF114PDZ 339 bp overlap
GMEB1 1 dataset
ChIP HepG2 ENCFF434UDC 77 bp overlap
HDAC2 1 dataset
ChIP RH4_Entinostat-6H GSE116344.HDAC2.RH4_Entinostat-6H 518 bp overlap
HDGF 2 datasets
ChIP K-562 ENCSR563YDA.HDGF.K-562 239 bp overlap
ChIP K-562 ENCSR197ALX.HDGF.K-562 238 bp overlap
HINFP 2 datasets
Motif DE_12h DE_12h-HINFP_MA0131.3 8 bp overlap
Motif ES_0h ES_0h-HINFP_MA0131.3 8 bp overlap
HNF1B 2 datasets
ChIP Hep-G2 ENCSR127XTZ.HNF1B.Hep-G2 316 bp overlap
ChIP HepG2 ENCFF928THX 505 bp overlap
HNF4A 7 datasets
Motif DE_12h DE_12h-HNF4A_MA1494.2 14 bp overlap
Motif ES_0h ES_0h-HNF4A_MA1494.2 14 bp overlap
ChIP GP5D GSE51234.HNF4A.GP5D 319 bp overlap
ChIP IM95 GSE114018.HNF4A.IM95 478 bp overlap
ChIP IM95 GSE114018.HNF4A.IM95 81 bp overlap
ChIP KATO-III GSE114018.HNF4A.KATO-III 326 bp overlap
ChIP LoVo_PHASES GSE51290.HNF4A.LoVo_PHASES 455 bp overlap
IKZF1 3 datasets
Motif DE_12h DE_12h-IKZF1_MA1508.2 8 bp overlap
ChIP GM12878 ENCFF753XDO 591 bp overlap
ChIP pre-B-cell GSE107886.IKZF1.pre-B-cell 233 bp overlap
IKZF2 1 dataset
Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap
Ikzf3 1 dataset
Motif DE_12h DE_12h-Ikzf3_MA1992.2 9 bp overlap
Irf1 2 datasets
Motif DE_12h DE_12h-Irf1_MA0050.4 11 bp overlap
Motif ES_0h ES_0h-Irf1_MA0050.4 11 bp overlap
KLF1 2 datasets
ChIP HEK293 ENCFF159QSW 437 bp overlap
ChIP HEK293 ENCSR859BMR.KLF1.HEK293 204 bp overlap
KLF9 1 dataset
ChIP GBM1A GSE62211.KLF9.GBM1A 169 bp overlap
MAX 3 datasets
ChIP Hep-G2 ENCSR168DYA.MAX.Hep-G2 309 bp overlap
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 191 bp overlap
ChIP WTC11 ENCFF223QFY 533 bp overlap
MCM3 1 dataset
ChIP K-562 ENCSR990AZC.MCM3.K-562 490 bp overlap
MLLT1 1 dataset
ChIP GM12878 ENCSR552XSN.MLLT1.GM12878 283 bp overlap
MTA2 1 dataset
ChIP GM12878 ENCSR293QAR.MTA2.GM12878 265 bp overlap
MTERF4 2 datasets
ChIP HepG2 ENCFF831NAM 481 bp overlap
ChIP HepG2 ENCFF831NAM 224 bp overlap
MXD4 1 dataset
ChIP Hep-G2 ENCSR441KFW.MXD4.Hep-G2 157 bp overlap
MYB 4 datasets
ChIP Jurkat GSE59657.MYB.Jurkat 185 bp overlap
ChIP Jurkat GSE59657.MYB.Jurkat 370 bp overlap
ChIP MOLT-3 GSE59657.MYB.MOLT-3 249 bp overlap
ChIP PF-382 GSE94000.MYB.PF-382 234 bp overlap
MYOG 1 dataset
ChIP RH4_DMSO-6H GSE116344.MYOG.RH4_DMSO-6H 176 bp overlap
MYPOP 1 dataset
ChIP HepG2 ENCFF176TQL 230 bp overlap
Msgn1 1 dataset
Motif DE_12h DE_12h-Msgn1_MA1524.3 10 bp overlap
NANOG 3 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 455 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 198 bp overlap
ChIP hESC GSE18292.NANOG.hESC 98 bp overlap
NCOA1 1 dataset
ChIP HepG2 ENCFF624JES 343 bp overlap
NFE2L1 1 dataset
ChIP WTC11 ENCFF644BPU 342 bp overlap
NFIB 1 dataset
Motif DE_12h DE_12h-NFIB_MA1643.2 17 bp overlap
NFIX 1 dataset
Motif DE_12h DE_12h-NFIX_MA1528.2 14 bp overlap
NOTCH1 1 dataset
ChIP HPBALL GSE39263.NOTCH1.HPBALL 377 bp overlap
NRF1 1 dataset
ChIP HeLa-S3 GSE108856.NRF1.HeLa-S3 395 bp overlap
ONECUT1 2 datasets
ChIP Hep-G2 ENCSR956OSX.ONECUT1.Hep-G2 287 bp overlap
ChIP HepG2 ENCFF243FIR 341 bp overlap
PAX5 1 dataset
ChIP fetal_testis GSE100639.PAX5.fetal_testis 64 bp overlap
PBX1 2 datasets
Motif DE_12h DE_12h-PBX1_MA0070.2 9 bp overlap
Motif ES_0h ES_0h-PBX1_MA0070.2 9 bp overlap
PHF8 1 dataset
ChIP Hep-G2 ENCSR604VAE.PHF8.Hep-G2 307 bp overlap
PHIP 1 dataset
ChIP HCT-116_ab833 GSE101646.PHIP.HCT-116_ab833 194 bp overlap
PLAG1 1 dataset
Motif DE_12h DE_12h-PLAG1_MA0163.1 14 bp overlap
POLR2A 1 dataset
ChIP H1 ENCFF833NJP 277 bp overlap
POU1F1 2 datasets
Motif DE_12h DE_12h-POU1F1_MA0784.3 14 bp overlap
Motif ES_0h ES_0h-POU1F1_MA0784.3 14 bp overlap
POU2F1 2 datasets
Motif DE_12h DE_12h-POU2F1_MA0785.2 9 bp overlap
Motif ES_0h ES_0h-POU2F1_MA0785.2 9 bp overlap
POU2F2 3 datasets
Motif DE_12h DE_12h-POU2F2_MA0507.3 13 bp overlap
Motif ES_0h ES_0h-POU2F2_MA0507.3 13 bp overlap
ChIP GM12878 ENCFF207RKY 321 bp overlap
POU2F3 3 datasets
Motif DE_12h DE_12h-POU2F3_MA0627.3 9 bp overlap
Motif ES_0h ES_0h-POU2F3_MA0627.3 9 bp overlap
ChIP NCI-H1048 GSE115123.POU2F3.NCI-H1048 173 bp overlap
POU3F2 2 datasets
Motif DE_12h DE_12h-POU3F2_MA0787.1 12 bp overlap
Motif ES_0h ES_0h-POU3F2_MA0787.1 12 bp overlap
POU3F4 2 datasets
Motif DE_12h DE_12h-POU3F4_MA0789.1 9 bp overlap
Motif ES_0h ES_0h-POU3F4_MA0789.1 9 bp overlap
POU5F1 6 datasets
Motif DE_12h DE_12h-POU5F1_MA1115.2 7 bp overlap
Motif ES_0h ES_0h-POU5F1_MA1115.2 7 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 297 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 452 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 500 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 283 bp overlap
POU5F1B 2 datasets
Motif DE_12h DE_12h-POU5F1B_MA0792.1 9 bp overlap
Motif ES_0h ES_0h-POU5F1B_MA0792.1 9 bp overlap
PRDM14 3 datasets
ChIP hESC GSE22767.PRDM14.hESC 818 bp overlap
ChIP primordial-germ-cell-like-cell GSE138674.PRDM14.primordial-germ-cell-like-cell 300 bp overlap
ChIP primordial-germ-cell-like-cell GSE138674.PRDM14.primordial-germ-cell-like-cell 213 bp overlap
PROX1 3 datasets
ChIP SW480 GSE60390.PROX1.SW480 173 bp overlap
ChIP SW480 GSE60390.PROX1.SW480 155 bp overlap
ChIP SW480 GSE60390.PROX1.SW480 186 bp overlap
Plagl1 1 dataset
Motif DE_12h DE_12h-Plagl1_MA1615.2 8 bp overlap
Pparg::Rxra 2 datasets
Motif DE_12h DE_12h-PpargRxra_MA0065.3 13 bp overlap
Motif DE_12h DE_12h-PpargRxra_MA0065.3 13 bp overlap
Prdm14 2 datasets
Motif DE_12h DE_12h-Prdm14_MA1998.2 8 bp overlap
Motif ES_0h ES_0h-Prdm14_MA1998.2 8 bp overlap
RAD21 1 dataset
ChIP GP5D GSE51234.RAD21.GP5D 283 bp overlap
RARA 1 dataset
Motif DE_12h DE_12h-RARA_MA0729.1 18 bp overlap
RBPJ 2 datasets
Motif DE_12h DE_12h-RBPJ_MA1116.2 6 bp overlap
Motif DE_12h DE_12h-RBPJ_MA1116.2 6 bp overlap
RELA 1 dataset
ChIP SGBS_TNF GSE64233.RELA.SGBS_TNF 149 bp overlap
REST 2 datasets
ChIP colorectal-cancer_shCDH1 GSE112555.REST.colorectal-cancer_shCDH1 105 bp overlap
ChIP colorectal-cancer_shCTRL_intact GSE112555.REST.colorectal-cancer_shCTRL_intact 95 bp overlap
RREB1 1 dataset
Motif DE_12h DE_12h-RREB1_MA0073.2 19 bp overlap
RUNX2 1 dataset
ChIP Karpas-45 GSE151819.RUNX2.Karpas-45 164 bp overlap
SAP130 1 dataset
ChIP HepG2 ENCFF892EHZ 491 bp overlap
SFPQ 2 datasets
ChIP HepG2 ENCFF145CDF 661 bp overlap
ChIP HepG2 ENCFF145CDF 499 bp overlap
SMAD2 2 datasets
Motif DE_12h DE_12h-SMAD2_MA1964.2 6 bp overlap
Motif ES_0h ES_0h-SMAD2_MA1964.2 6 bp overlap
SMARCA4 2 datasets
ChIP CTV-1_DSG GSE128835.SMARCA4.CTV-1_DSG 267 bp overlap
ChIP K-562 ENCSR587OQL.SMARCA4.K-562 277 bp overlap
SOX10 2 datasets
Motif DE_12h DE_12h-SOX10_MA0442.3 6 bp overlap
Motif ES_0h ES_0h-SOX10_MA0442.3 6 bp overlap
SOX12 2 datasets
Motif DE_12h DE_12h-SOX12_MA1561.2 10 bp overlap
Motif ES_0h ES_0h-SOX12_MA1561.2 10 bp overlap
SPI1 3 datasets
ChIP CTV-1_FLAG_15perc GSE128835.SPI1.CTV-1_FLAG_15perc 240 bp overlap
ChIP CTV-1_delQ GSE128835.SPI1.CTV-1_delQ 268 bp overlap
ChIP DC_LPS GSE123347.SPI1.DC_LPS 105 bp overlap
Stat2 2 datasets
Motif DE_12h DE_12h-Stat2_MA1623.2 10 bp overlap
Motif ES_0h ES_0h-Stat2_MA1623.2 10 bp overlap
TAL1 1 dataset
ChIP MOLT-3 GSE59657.TAL1.MOLT-3 162 bp overlap
TBX20 1 dataset
Motif DE_12h DE_12h-TBX20_MA0689.1 11 bp overlap
TBX5 2 datasets
Motif DE_12h DE_12h-TBX5_MA0807.1 8 bp overlap
Motif ES_0h ES_0h-TBX5_MA0807.1 8 bp overlap
TCF12 2 datasets
ChIP H1 ENCFF203EBH 182 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 135 bp overlap
TCF4 1 dataset
ChIP LS180 GSE31939.TCF4.LS180 92 bp overlap
TFAP2A 1 dataset
Motif DE_12h DE_12h-TFAP2A_MA0003.5 9 bp overlap
TFAP2C 3 datasets
Motif DE_12h DE_12h-TFAP2C_MA0814.3 9 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 145 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 287 bp overlap
THRB 1 dataset
ChIP K562 ENCFF620NFN 291 bp overlap
TP53 2 datasets
ChIP SW480_0h_TNFa GSE102796.TP53.SW480_0h_TNFa 190 bp overlap
ChIP SW480_0h_TNFa GSE102796.TP53.SW480_0h_TNFa 309 bp overlap
TRAFD1 1 dataset
ChIP HepG2 ENCFF355OOY 350 bp overlap
TRIM28 1 dataset
ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 280 bp overlap
UBTF 2 datasets
ChIP HepG2 ENCFF424RNN 516 bp overlap
ChIP HepG2 ENCFF424RNN 313 bp overlap
VEZF1 1 dataset
Motif DE_12h DE_12h-VEZF1_MA1578.2 6 bp overlap
Wt1 2 datasets
Motif DE_12h DE_12h-Wt1_MA1627.2 10 bp overlap
Motif ES_0h ES_0h-Wt1_MA1627.2 10 bp overlap
YEATS4 1 dataset
ChIP HepG2 ENCFF340OIC 531 bp overlap
ZFHX2 1 dataset
ChIP HEK293 ENCFF167TUA 465 bp overlap
ZFP14 2 datasets
Motif DE_12h DE_12h-ZFP14_MA1972.1 15 bp overlap
Motif ES_0h ES_0h-ZFP14_MA1972.1 15 bp overlap
ZFX 1 dataset
ChIP HepG2 ENCFF016NZF 216 bp overlap
ZFY 2 datasets
ChIP Hep-G2 ENCSR949OEV.ZFY.Hep-G2 135 bp overlap
ChIP HepG2 ENCFF106ELT 401 bp overlap
ZKSCAN1 2 datasets
Motif DE_12h DE_12h-ZKSCAN1_MA1585.2 9 bp overlap
Motif ES_0h ES_0h-ZKSCAN1_MA1585.2 9 bp overlap
ZNF140 2 datasets
Motif DE_12h DE_12h-ZNF140_MA1589.2 19 bp overlap
Motif ES_0h ES_0h-ZNF140_MA1589.2 19 bp overlap
ZNF143 1 dataset
Motif DE_12h DE_12h-ZNF143_MA0088.2 16 bp overlap
ZNF175 1 dataset
Motif DE_12h DE_12h-ZNF175_MA2332.1 9 bp overlap
ZNF232 3 datasets
ChIP Hep-G2 ENCSR837GLU.ZNF232.Hep-G2 454 bp overlap
ChIP HepG2 ENCFF905UTT 441 bp overlap
ChIP HepG2 ENCFF905UTT 441 bp overlap
ZNF264 2 datasets
ChIP HepG2 ENCFF453WJV 451 bp overlap
ChIP HepG2 ENCFF453WJV 310 bp overlap
ZNF282 3 datasets
Motif DE_12h DE_12h-ZNF282_MA1154.2 15 bp overlap
Motif DE_12h DE_12h-ZNF282_MA1154.2 15 bp overlap
Motif ES_0h ES_0h-ZNF282_MA1154.2 15 bp overlap
ZNF398 2 datasets
ChIP HEK293 ENCFF184XEW 457 bp overlap
ChIP HEK293 ENCSR676ZEF.ZNF398.HEK293 344 bp overlap
ZNF407 2 datasets
ChIP Hep-G2 ENCSR005WGY.ZNF407.Hep-G2 310 bp overlap
ChIP Hep-G2 ENCSR005WGY.ZNF407.Hep-G2 221 bp overlap
ZNF530 1 dataset
Motif DE_12h DE_12h-ZNF530_MA1981.2 14 bp overlap
ZNF547 2 datasets
ChIP HepG2 ENCFF834XWI 553 bp overlap
ChIP HepG2 ENCFF834XWI 295 bp overlap
ZNF646 1 dataset
ChIP HepG2 ENCFF141MBP 525 bp overlap
ZNF675 3 datasets
Motif DE_12h DE_12h-ZNF675_MA1714.2 19 bp overlap
Motif DE_12h DE_12h-ZNF675_MA1714.2 19 bp overlap
Motif ES_0h ES_0h-ZNF675_MA1714.2 19 bp overlap
ZNF701 4 datasets
Motif DE_12h DE_12h-ZNF701_MA1987.2 17 bp overlap
Motif DE_12h DE_12h-ZNF701_MA1987.2 17 bp overlap
Motif ES_0h ES_0h-ZNF701_MA1987.2 17 bp overlap
Motif ES_0h ES_0h-ZNF701_MA1987.2 17 bp overlap
ZNF707 2 datasets
Motif DE_12h DE_12h-ZNF707_MA1715.1 15 bp overlap
Motif ES_0h ES_0h-ZNF707_MA1715.1 15 bp overlap
ZNF708 2 datasets
Motif DE_12h DE_12h-ZNF708_MA1730.2 9 bp overlap
Motif ES_0h ES_0h-ZNF708_MA1730.2 9 bp overlap
ZNF740 1 dataset
Motif DE_12h DE_12h-ZNF740_MA0753.3 10 bp overlap
ZNF749 1 dataset
ChIP HepG2 ENCFF992SKL 585 bp overlap
ZNF76 1 dataset
Motif DE_12h DE_12h-ZNF76_MA1716.2 17 bp overlap
ZNF8 2 datasets
Motif DE_12h DE_12h-ZNF8_MA1718.1 20 bp overlap
Motif ES_0h ES_0h-ZNF8_MA1718.1 20 bp overlap
ZNF865 2 datasets
ChIP HepG2 ENCFF472KAQ 219 bp overlap
ChIP HepG2 ENCFF472KAQ 300 bp overlap
ZSCAN29 1 dataset
ChIP HepG2 ENCFF212SBM 717 bp overlap