chr5 : 123,093,515 123,094,439
924 bp 126 TFs 4 linked genes
This 924 bp open chromatin element is linked to 4 target genes and is bound by 126 transcription factors.
Linked Genes
4 genes
Distance
Link type
Gene Expression Dist. to TSS Distance Link type
PRDM6-AS1 4.2 kb Proximal Proximity
PRDM6 4.3 kb Proximal Proximity
PPIC 57.2 kb Distal Multiome
SNX24 248.4 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:123,088,515 – 123,099,439
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
126 transcription factors
Source
Cell type
ASH2L 3 datasets
ChIP H1 ENCFF399KAM 785 bp overlap
ChIP H1 ENCFF399KAM 472 bp overlap
ChIP H1 ENCFF399KAM 219 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 240 bp overlap
BCL11A 1 dataset
ChIP MCF-10A ERP003925.BCL11A.MCF-10A 194 bp overlap
BCOR 1 dataset
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 811 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 924 bp overlap
BRD4 2 datasets
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 264 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 114 bp overlap
CBX7 3 datasets
ChIP hESC GSE133412.CBX7.hESC 91 bp overlap
ChIP hESC_QKO GSE133412.CBX7.hESC_QKO 96 bp overlap
ChIP hESC_TKO GSE133412.CBX7.hESC_TKO 97 bp overlap
CBX8 1 dataset
ChIP H1 ENCFF095JHA 242 bp overlap
CHD1 3 datasets
ChIP H1 ENCFF998XEK 282 bp overlap
ChIP H1 ENCFF998XEK 477 bp overlap
ChIP WA01 ENCSR000AQK.CHD1.WA01 862 bp overlap
CHD7 1 dataset
ChIP WA01 ENCSR000AVA.CHD7.WA01 357 bp overlap
CREB1 1 dataset
ChIP WA01 ENCSR000BSN.CREB1.WA01 158 bp overlap
CTBP2 3 datasets
ChIP H1 ENCFF329MAX 591 bp overlap
ChIP H1 ENCFF329MAX 450 bp overlap
ChIP WA01 ENCSR000EUO.CTBP2.WA01 808 bp overlap
CTCF 3 datasets
Motif DE_12h DE_12h-CTCF_MA1929.2 31 bp overlap
ChIP aorta_thoracic ENCSR668BTN.CTCF.aorta_thoracic 95 bp overlap
ChIP fibroblast_AORTIC_ADVENTITIA ENCSR000DPY.CTCF.fibroblast_AORTIC_ADVENTITIA 119 bp overlap
E2F6 3 datasets
Motif DE_12h DE_12h-E2F6_MA0471.3 8 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 142 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 132 bp overlap
E2F8 1 dataset
Motif DE_12h DE_12h-E2F8_MA0865.3 9 bp overlap
EED 1 dataset
ChIP ProEs GSE59087.EED.ProEs 142 bp overlap
EGR2 1 dataset
Motif DE_12h DE_12h-EGR2_MA0472.2 11 bp overlap
EGR4 1 dataset
Motif DE_12h DE_12h-EGR4_MA0733.2 11 bp overlap
ESR2 1 dataset
Motif DE_12h DE_12h-ESR2_MA0258.2 15 bp overlap
ETS1 1 dataset
ChIP cardiomyocyte_D0 GSE129986.ETS1.cardiomyocyte_D0 198 bp overlap
EZH2 28 datasets
ChIP A673 ENCFF790MVL 637 bp overlap
ChIP A673 ENCFF955JRZ 467 bp overlap
ChIP B-cell ENCSR000AUZ.EZH2.B-cell 363 bp overlap
ChIP B-cell ENCSR000AUZ.EZH2.B-cell 104 bp overlap
ChIP GM23338 ENCFF613YON 585 bp overlap
ChIP GM23338 ENCFF613YON 387 bp overlap
ChIP H1 ENCFF232NZA 924 bp overlap
ChIP HUVEC-C GSE109625.EZH2.HUVEC-C 924 bp overlap
ChIP HUVEC-C_VEGF_12h GSE109625.EZH2.HUVEC-C_VEGF_12h 297 bp overlap
ChIP HUVEC-C_VEGF_12h GSE109625.EZH2.HUVEC-C_VEGF_12h 308 bp overlap
ChIP HUVEC-C_VEGF_4h GSE109625.EZH2.HUVEC-C_VEGF_4h 305 bp overlap
ChIP HUVEC-C_VEGF_4h GSE109625.EZH2.HUVEC-C_VEGF_4h 80 bp overlap
ChIP LNCaP GSE39459.EZH2.LNCaP 287 bp overlap
ChIP astrocyte ENCFF365JTP 471 bp overlap
ChIP astrocyte ENCFF365JTP 385 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 127 bp overlap
ChIP hepatocyte ENCFF118DKH 357 bp overlap
ChIP hepatocyte ENCFF118DKH 88 bp overlap
ChIP hepatocyte ENCFF552DZB 134 bp overlap
ChIP hepatocyte ENCFF552DZB 666 bp overlap
ChIP mammary epithelial cell ENCFF224GAI 367 bp overlap
ChIP mammary epithelial cell ENCFF224GAI 491 bp overlap
ChIP myotube ENCSR000ASZ.EZH2.myotube 571 bp overlap
ChIP neural cell ENCFF610EPB 401 bp overlap
ChIP neural progenitor cell ENCFF018MKA 691 bp overlap
ChIP neural progenitor cell ENCFF018MKA 99 bp overlap
ChIP neural progenitor cell ENCFF018MKA 99 bp overlap
ChIP neural progenitor cell ENCFF472NFV 924 bp overlap
Elf5 1 dataset
Motif DE_12h DE_12h-Elf5_MA0136.4 8 bp overlap
FEZF2 1 dataset
Motif DE_12h DE_12h-FEZF2_MA2341.1 8 bp overlap
FOSL2 1 dataset
Motif DE_12h DE_12h-FOSL2_MA0478.2 10 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 181 bp overlap
GATA4 2 datasets
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 248 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 111 bp overlap
GATA6 6 datasets
ChIP DE_D1 S09-DE-d1-GATA6-exp1 121 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 516 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 593 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 924 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 188 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 100 bp overlap
GRHL2 1 dataset
Motif DE_12h DE_12h-GRHL2_MA1105.3 8 bp overlap
HDAC2 1 dataset
ChIP WA01 ENCSR000AVB.HDAC2.WA01 333 bp overlap
HIF1A 1 dataset
ChIP BEAS-2B_arsenic GSE145834.HIF1A.BEAS-2B_arsenic 217 bp overlap
HNF4A 1 dataset
Motif DE_12h DE_12h-HNF4A_MA0114.5 9 bp overlap
HNF4G 1 dataset
Motif DE_12h DE_12h-HNF4G_MA0484.3 9 bp overlap
Hand1 1 dataset
Motif DE_12h DE_12h-Hand1_MA2123.1 9 bp overlap
IKZF2 1 dataset
Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap
Isl1 1 dataset
Motif DE_12h DE_12h-Isl1_MA1608.2 7 bp overlap
JARID2 7 datasets
ChIP AMIPS6 GSE48516.JARID2.AMIPS6 820 bp overlap
ChIP AMIPS8 GSE48516.JARID2.AMIPS8 511 bp overlap
ChIP EDOMIPS2 GSE48516.JARID2.EDOMIPS2 185 bp overlap
ChIP EDOMIPS2 GSE48516.JARID2.EDOMIPS2 218 bp overlap
ChIP MRC-5_IPS25 GSE48516.JARID2.MRC-5_IPS25 338 bp overlap
ChIP UTEIPS11 GSE48516.JARID2.UTEIPS11 924 bp overlap
ChIP hESC_TKO GSE133412.JARID2.hESC_TKO 78 bp overlap
JUN 6 datasets
ChIP 786-O GSE86092.JUN.786-O 256 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 633 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 555 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 287 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 544 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 375 bp overlap
JUNB 2 datasets
ChIP GM23338 ENCFF224LRO 325 bp overlap
ChIP hESC ENCSR917MAH.JUNB.hESC 209 bp overlap
KDM4A 2 datasets
ChIP H1 ENCFF078LED 245 bp overlap
ChIP WA01 ENCSR000AVC.KDM4A.WA01 924 bp overlap
KLF1 1 dataset
Motif DE_12h DE_12h-KLF1_MA0493.3 8 bp overlap
KLF11 1 dataset
Motif DE_12h DE_12h-KLF11_MA1512.2 10 bp overlap
KLF16 1 dataset
Motif DE_12h DE_12h-KLF16_MA0741.1 11 bp overlap
KLF2 1 dataset
Motif DE_12h DE_12h-KLF2_MA1515.2 8 bp overlap
KLF4 1 dataset
Motif DE_12h DE_12h-KLF4_MA0039.5 8 bp overlap
KLF5 1 dataset
Motif DE_12h DE_12h-KLF5_MA0599.1 10 bp overlap
KLF6 1 dataset
Motif DE_12h DE_12h-KLF6_MA1517.2 9 bp overlap
KLF9 1 dataset
Motif DE_12h DE_12h-KLF9_MA1107.3 11 bp overlap
KMT2A 4 datasets
ChIP HEK293T_C-term GSE90762.KMT2A.HEK293T_C-term 524 bp overlap
ChIP HEK293T_C-term_C104 GSE90762.KMT2A.HEK293T_C-term_C104 249 bp overlap
ChIP HEK293T_C-term_C49 GSE90762.KMT2A.HEK293T_C-term_C49 309 bp overlap
ChIP HEK293T_C-term_shCtrl_TASP1-KO GSE90762.KMT2A.HEK293T_C-term_shCtrl_TASP1-KO 450 bp overlap
MAZ 1 dataset
Motif DE_12h DE_12h-MAZ_MA1522.2 8 bp overlap
MEIS1 1 dataset
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
MEIS2 1 dataset
Motif DE_12h DE_12h-MEIS2_MA0774.1 8 bp overlap
MEIS3 1 dataset
Motif DE_12h DE_12h-MEIS3_MA0775.2 7 bp overlap
MTF2 1 dataset
ChIP DU145_SH4 GSE135623.MTF2.DU145_SH4 698 bp overlap
MYC 1 dataset
ChIP Kelly GSE138295.MYC.Kelly 388 bp overlap
NANOG 1 dataset
ChIP GM23338 ENCFF065NZG 311 bp overlap
NCAPH2 1 dataset
ChIP IMR-90_Bethyl275_G GSE118494.NCAPH2.IMR-90_Bethyl275_G 219 bp overlap
NFATC3 2 datasets
Motif DE_12h DE_12h-NFATC3_MA0625.3 6 bp overlap
Motif DE_12h DE_12h-NFATC3_MA0625.3 6 bp overlap
Nfatc1 2 datasets
Motif DE_12h DE_12h-Nfatc1_MA0624.3 6 bp overlap
Motif DE_12h DE_12h-Nfatc1_MA0624.3 6 bp overlap
PARP1 1 dataset
ChIP MCF-10A GSE93038.PARP1.MCF-10A 306 bp overlap
PCGF2 2 datasets
ChIP NT2-D1 GSE101538.PCGF2.NT2-D1 444 bp overlap
ChIP fibroblast_OHT GSE55605.PCGF2.fibroblast_OHT 226 bp overlap
PDX1 2 datasets
ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 91 bp overlap
ChIP pancreatic-progenitor GSE117136.PDX1.pancreatic-progenitor 133 bp overlap
PLAG1 1 dataset
Motif DE_12h DE_12h-PLAG1_MA0163.1 14 bp overlap
POLR2A 1 dataset
ChIP neural cell ENCFF604SPB 56 bp overlap
POU2F3 1 dataset
Motif DE_12h DE_12h-POU2F3_MA0627.3 9 bp overlap
POU4F2 1 dataset
Motif DE_12h DE_12h-POU4F2_MA0683.2 15 bp overlap
POU5F1 1 dataset
ChIP DE_D1 DED1-OCT4_Batch_II 693 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 887 bp overlap
PRDM15 1 dataset
ChIP WTC11 ENCFF108TMF 401 bp overlap
PRDM9 1 dataset
Motif DE_12h DE_12h-PRDM9_MA1723.2 20 bp overlap
Prdm15 1 dataset
Motif DE_12h DE_12h-Prdm15_MA1616.2 11 bp overlap
Prdm4 1 dataset
Motif DE_12h DE_12h-Prdm4_MA1647.3 11 bp overlap
RAD21 1 dataset
ChIP HCT-116 GSE131606.RAD21.HCT-116 272 bp overlap
RBBP5 3 datasets
ChIP H1 ENCFF905HFL 671 bp overlap
ChIP WA01 ENCSR000AQC.RBBP5.WA01 173 bp overlap
ChIP WA01 ENCSR000AQC.RBBP5.WA01 496 bp overlap
RBM39 4 datasets
ChIP HepG2 ENCFF084YZE 681 bp overlap
ChIP HepG2 ENCFF801JUH 677 bp overlap
ChIP K-562 ENCSR764OXF.RBM39.K-562 165 bp overlap
ChIP K-562 GSE120104.RBM39.K-562 176 bp overlap
RBPJ 1 dataset
Motif DE_12h DE_12h-RBPJ_MA1116.2 6 bp overlap
RELB 1 dataset
Motif DE_12h DE_12h-RELB_MA1117.2 7 bp overlap
REST 1 dataset
Motif DE_12h DE_12h-REST_MA0138.3 20 bp overlap
RNF2 5 datasets
ChIP H1 ENCFF239FFS 636 bp overlap
ChIP HMELBRAF_OVER GSE51929.RNF2.HMELBRAF_OVER 185 bp overlap
ChIP K-562 ENCSR820GND.RNF2.K-562 121 bp overlap
ChIP NCCIT GSE71675.RNF2.NCCIT 193 bp overlap
ChIP fibroblast GSE139053.RNF2.fibroblast 261 bp overlap
RORA 1 dataset
Motif DE_12h DE_12h-RORA_MA0072.2 11 bp overlap
SAP30 2 datasets
ChIP WA01 ENCSR000ATR.SAP30.WA01 327 bp overlap
ChIP WA01 ENCSR000ATR.SAP30.WA01 111 bp overlap
SIN3A 1 dataset
ChIP WA01 ENCSR000EBO.SIN3A.WA01 134 bp overlap
SMAD2 1 dataset
Motif DE_12h DE_12h-SMAD2_MA1964.2 6 bp overlap
SMAD2-3 6 datasets
ChIP HUES-8 GSE109524.SMAD2-3.HUES-8 319 bp overlap
ChIP HUES-8 GSE109524.SMAD2-3.HUES-8 224 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 502 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 457 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 379 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 53 bp overlap
SMAD2_3 3 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 327 bp overlap
ChIP ESC S33-ESC-d0-SMAD2_3-exp2 270 bp overlap
ChIP ESC S33-ESC-d0-SMAD2_3-exp2 117 bp overlap
SMARCA4 2 datasets
ChIP K-562 ENCSR643VTW.SMARCA4.K-562 243 bp overlap
ChIP K-562 ENCSR643VTW.SMARCA4.K-562 98 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 364 bp overlap
SP2 1 dataset
Motif DE_12h DE_12h-SP2_MA0516.3 9 bp overlap
SP5 2 datasets
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
SRSF3 1 dataset
ChIP Hep-G2 GSE120104.SRSF3.Hep-G2 233 bp overlap
STAT1 1 dataset
Motif DE_12h DE_12h-STAT1_MA0137.4 9 bp overlap
SUZ12 9 datasets
ChIP GM12878 ENCSR091BOQ.SUZ12.GM12878 369 bp overlap
ChIP GM12878 ENCSR091BOQ.SUZ12.GM12878 81 bp overlap
ChIP H1 ENCFF881NFR 924 bp overlap
ChIP HEK293T_PCGF2fl GSE119618.SUZ12.HEK293T_PCGF2fl 62 bp overlap
ChIP LNCaP-abl GSE39459.SUZ12.LNCaP-abl 366 bp overlap
ChIP NCCIT GSE71675.SUZ12.NCCIT 146 bp overlap
ChIP NT2/D1 ENCFF574SXS 320 bp overlap
ChIP WA01 ENCSR000EUQ.SUZ12.WA01 192 bp overlap
ChIP WA01 ENCSR000ATS.SUZ12.WA01 801 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 132 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 924 bp overlap
TFDP1 1 dataset
Motif DE_12h DE_12h-TFDP1_MA1122.2 8 bp overlap
TP53 1 dataset
ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 367 bp overlap
TRIM28 1 dataset
ChIP hESC GSE115387.TRIM28.hESC 277 bp overlap
Wt1 1 dataset
Motif DE_12h DE_12h-Wt1_MA1627.2 10 bp overlap
YY1 3 datasets
ChIP Huh-7 GSE97411.YY1.Huh-7 151 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 196 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 329 bp overlap
ZBTB12 1 dataset
Motif DE_12h DE_12h-ZBTB12_MA1649.2 7 bp overlap
ZBTB24 1 dataset
Motif DE_12h DE_12h-ZBTB24_MA2330.1 10 bp overlap
ZBTB7A 1 dataset
ChIP VCaP_FBS GSE123089.ZBTB7A.VCaP_FBS 220 bp overlap
ZNF143 2 datasets
ChIP WA01 ENCSR000EBW.ZNF143.WA01 127 bp overlap
ChIP WA01 ENCSR000EBW.ZNF143.WA01 119 bp overlap
ZNF148 2 datasets
Motif DE_12h DE_12h-ZNF148_MA1653.2 10 bp overlap
Motif DE_12h DE_12h-ZNF148_MA1653.2 10 bp overlap
ZNF184 1 dataset
Motif DE_12h DE_12h-ZNF184_MA2120.1 13 bp overlap
ZNF281 2 datasets
Motif DE_12h DE_12h-ZNF281_MA1630.3 10 bp overlap
ChIP WTC11 ENCFF551GAV 377 bp overlap
ZNF282 1 dataset
Motif DE_12h DE_12h-ZNF282_MA1154.2 15 bp overlap
ZNF320 1 dataset
Motif DE_12h DE_12h-ZNF320_MA1976.2 20 bp overlap
ZNF416 1 dataset
Motif DE_12h DE_12h-ZNF416_MA1979.2 10 bp overlap
ZNF418 2 datasets
Motif DE_12h DE_12h-ZNF418_MA1980.1 15 bp overlap
Motif DE_12h DE_12h-ZNF418_MA1980.1 15 bp overlap
ZNF483 1 dataset
ChIP HEK293T GSE78099.ZNF483.HEK293T 127 bp overlap
ZNF530 1 dataset
Motif DE_12h DE_12h-ZNF530_MA1981.2 14 bp overlap
ZNF596 2 datasets
ChIP HEK293 ENCFF854MGB 150 bp overlap
ChIP HEK293 ENCSR344SBD.ZNF596.HEK293 127 bp overlap
ZNF610 1 dataset
Motif DE_12h DE_12h-ZNF610_MA1713.2 10 bp overlap
ZNF675 1 dataset
Motif DE_12h DE_12h-ZNF675_MA1714.2 19 bp overlap
ZNF701 1 dataset
Motif DE_12h DE_12h-ZNF701_MA1987.2 17 bp overlap
ZNF816 1 dataset
Motif DE_12h DE_12h-ZNF816_MA1719.2 15 bp overlap
ZSCAN4 1 dataset
Motif DE_12h DE_12h-ZSCAN4_MA1155.1 15 bp overlap
Znf423 1 dataset
Motif DE_12h DE_12h-Znf423_MA0116.1 15 bp overlap