chr1 : 225,677,341 225,677,749
408 bp 116 TFs 0 linked genes
This 408 bp open chromatin element has no linked target genes and is bound by 116 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:225,672,341 – 225,682,749
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
116 transcription factors
Source
Cell type
AATF 1 dataset
ChIP NALM-6 GSE93626.AATF.NALM-6 233 bp overlap
AGO1 3 datasets
ChIP Hep-G2 ENCSR555ZMV.AGO1.Hep-G2 317 bp overlap
ChIP Hep-G2 GSE120104.AGO1.Hep-G2 318 bp overlap
ChIP K-562 ENCSR641BSL.AGO1.K-562 181 bp overlap
APC 1 dataset
ChIP HCT-116 GSE103894.APC.HCT-116 251 bp overlap
AR 7 datasets
ChIP LNCaP-clone-FGC_DHT-ABBV-075 GSE118247.AR.LNCaP-clone-FGC_DHT-ABBV-075 223 bp overlap
ChIP MDA-MB-453 ERP003503.AR.MDA-MB-453 287 bp overlap
ChIP MDA-MB-453_FOXA1 ERP003503.AR.MDA-MB-453_FOXA1 287 bp overlap
ChIP breast_tumor_Male_8 GSE104399.AR.breast_tumor_Male_8 82 bp overlap
ChIP myofibroblast GSE90772.AR.myofibroblast 279 bp overlap
ChIP prostate_cancer-associated-fibroblasts GSE90772.AR.prostate_cancer-associated-fibroblasts 250 bp overlap
ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 291 bp overlap
ASH2L 2 datasets
ChIP H1 ENCFF399KAM 408 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 408 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 223 bp overlap
BCOR 4 datasets
ChIP WA01 GSE104690.BCOR.WA01 231 bp overlap
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 206 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 407 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 408 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 55 bp overlap
BRD4 4 datasets
ChIP CLL_patient1_4h_CpG GSE109411.BRD4.CLL_patient1_4h_CpG 249 bp overlap
ChIP HEK293_sgNT GSE129407.BRD4.HEK293_sgNT 235 bp overlap
ChIP hESC GSE33281.BRD4.hESC 153 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 263 bp overlap
CBFB 1 dataset
ChIP ME-1 GSE46044.CBFB.ME-1 378 bp overlap
CBX2 1 dataset
ChIP K562 ENCFF578AQI 408 bp overlap
CDK9 1 dataset
ChIP HCT-116 GSE72622.CDK9.HCT-116 238 bp overlap
CHD1 1 dataset
ChIP WA01 ENCSR000AQK.CHD1.WA01 273 bp overlap
CHD8 2 datasets
ChIP T-47D GSE62428.CHD8.T-47D 160 bp overlap
ChIP T-47D_ETOH_5 GSE62428.CHD8.T-47D_ETOH_5 160 bp overlap
CREB1 1 dataset
ChIP WA01 ENCSR000BSN.CREB1.WA01 105 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 259 bp overlap
CTCF 6 datasets
ChIP GM12866 ENCSR000DRF.CTCF.GM12866 100 bp overlap
ChIP T-47D_NaCl-isotonic-triptolide GSE111923.CTCF.T-47D_NaCl-isotonic-triptolide 308 bp overlap
ChIP THP-1_macrophage_PMA GSE96800.CTCF.THP-1_macrophage_PMA 256 bp overlap
ChIP WA01_NEUR GSE52457.CTCF.WA01_NEUR 234 bp overlap
ChIP anterior-temporal-cortex_fetal GSE116825.CTCF.anterior-temporal-cortex_fetal 273 bp overlap
ChIP hiPSC_IB12 GSE106870.CTCF.hiPSC_IB12 123 bp overlap
CTNNB1 1 dataset
ChIP hiPSC_D2 GSE132532.CTNNB1.hiPSC_D2 289 bp overlap
E2F6 3 datasets
ChIP H1 ENCFF785DWK 287 bp overlap
ChIP H1 ENCFF785DWK 244 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 408 bp overlap
EED 1 dataset
ChIP ProEs GSE59087.EED.ProEs 232 bp overlap
EGR1 1 dataset
ChIP K562 ENCFF113OPQ 82 bp overlap
EP300 1 dataset
ChIP osteoblast ENCSR000AUD.EP300.osteoblast 286 bp overlap
ERG 3 datasets
ChIP CD34_NR29 GSE23730.ERG.CD34_NR29 254 bp overlap
ChIP MCF-7 GSE23730.ERG.MCF-7 214 bp overlap
ChIP TSU-1621MT GSE60477.ERG.TSU-1621MT 213 bp overlap
ESR1 5 datasets
ChIP Ishikawa GSE99905.ESR1.Ishikawa 287 bp overlap
ChIP Ishikawa_E2-1h GSE129803.ESR1.Ishikawa_E2-1h 270 bp overlap
ChIP MCF-7_PaPE-1_OA GSE93510.ESR1.MCF-7_PaPE-1_OA 311 bp overlap
ChIP MCF-7_aldosterone GSE99626.ESR1.MCF-7_aldosterone 255 bp overlap
ChIP MDA-MB-134-VI_ESTROGEN GSE51022.ESR1.MDA-MB-134-VI_ESTROGEN 217 bp overlap
ESRRA 1 dataset
ChIP WTC11 ENCFF591YCA 393 bp overlap
ETS1 1 dataset
ChIP cardiomyocyte_D0 GSE129986.ETS1.cardiomyocyte_D0 157 bp overlap
ETV6 1 dataset
ChIP WTC11 ENCFF812SCD 377 bp overlap
EZH1 3 datasets
ChIP ProEs GSE59087.EZH1.ProEs 146 bp overlap
ChIP ProEs GSE59087.EZH1.ProEs 77 bp overlap
ChIP ProEs_SHCTR GSE59087.EZH1.ProEs_SHCTR 70 bp overlap
EZH2 6 datasets
ChIP H1 ENCFF232NZA 408 bp overlap
ChIP WA01 ENCSR000ASY.EZH2.WA01 352 bp overlap
ChIP hepatocyte ENCSR384LYW.EZH2.hepatocyte 297 bp overlap
ChIP neural progenitor cell ENCFF018MKA 408 bp overlap
ChIP neural progenitor cell ENCFF018MKA 408 bp overlap
ChIP neural progenitor cell ENCFF472NFV 408 bp overlap
FLI1 2 datasets
ChIP TSU-1621MT GSE60477.FLI1.TSU-1621MT 318 bp overlap
ChIP UAE_ZINC GSE23730.FLI1.UAE_ZINC 224 bp overlap
FOXA1 1 dataset
ChIP breast-cancer_heregulin GSE101407.FOXA1.breast-cancer_heregulin 329 bp overlap
FOXA2 1 dataset
ChIP BJ1-hTERT_FoxHnf1aCoExp GSE90454.FOXA2.BJ1-hTERT_FoxHnf1aCoExp 299 bp overlap
FOXO1 1 dataset
ChIP CD34 GSE80773.FOXO1.CD34 194 bp overlap
FOXP1 2 datasets
ChIP H9 GSE31006.FOXP1.H9 160 bp overlap
ChIP WTC11 ENCFF338WGC 408 bp overlap
FOXP4 1 dataset
ChIP WTC11 ENCFF708TAF 347 bp overlap
GABPA 2 datasets
ChIP H1 ENCFF739QFD 332 bp overlap
ChIP WA01 ENCSR000BIW.GABPA.WA01 294 bp overlap
GATA2 1 dataset
ChIP ME-1_CBFB-MYH11-KD GSE117138.GATA2.ME-1_CBFB-MYH11-KD 408 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 408 bp overlap
GSPT2 1 dataset
ChIP HEK293T GSE35197.GSPT2.HEK293T 297 bp overlap
GTF3C2 1 dataset
ChIP H9 GSE94418.GTF3C2.H9 408 bp overlap
HDAC2 3 datasets
ChIP RH4_DMSO-6H GSE116344.HDAC2.RH4_DMSO-6H 220 bp overlap
ChIP WA01 ENCSR000AVB.HDAC2.WA01 186 bp overlap
ChIP WA01 ENCSR000BNR.HDAC2.WA01 120 bp overlap
HEXIM1 1 dataset
ChIP HCT-116 GSE72622.HEXIM1.HCT-116 270 bp overlap
HIF1A 1 dataset
ChIP BEAS-2B_arsenic GSE145834.HIF1A.BEAS-2B_arsenic 191 bp overlap
HMBOX1 1 dataset
ChIP K562 ENCFF055GAZ 76 bp overlap
HMGN3 1 dataset
ChIP K-562 ENCSR000DOB.HMGN3.K-562 177 bp overlap
HOXA3 1 dataset
ChIP Hep-G2 ENCSR999JKC.HOXA3.Hep-G2 214 bp overlap
JARID2 2 datasets
ChIP MRC-5_IPS25_CTR GSE48515.JARID2.MRC-5_IPS25_CTR 375 bp overlap
ChIP MRC-5_IPS25_MEG3 GSE48515.JARID2.MRC-5_IPS25_MEG3 408 bp overlap
JUN 1 dataset
ChIP DE_D1 S08-DE-d1-JUN-exp1 253 bp overlap
KDM4A 6 datasets
ChIP H1 ENCFF078LED 408 bp overlap
ChIP H1 ENCFF078LED 302 bp overlap
ChIP WA01 ENCSR000AVC.KDM4A.WA01 408 bp overlap
ChIP hiPSC_IA12 GSE106870.KDM4A.hiPSC_IA12 199 bp overlap
ChIP hiPSC_IIA11 GSE106870.KDM4A.hiPSC_IIA11 213 bp overlap
ChIP hiPSC_IID12 GSE106870.KDM4A.hiPSC_IID12 233 bp overlap
KDM4C 1 dataset
ChIP KYSE-150 GSE53938.KDM4C.KYSE-150 173 bp overlap
MAF1 1 dataset
ChIP THP-1_macrophage_PMA GSE96800.MAF1.THP-1_macrophage_PMA 188 bp overlap
MAX 4 datasets
ChIP H1 ENCFF914VQY 230 bp overlap
ChIP WA01 ENCSR000EUP.MAX.WA01 152 bp overlap
ChIP WTC11 ENCFF223QFY 408 bp overlap
ChIP WTC11 ENCFF223QFY 263 bp overlap
MED1 2 datasets
ChIP HCT-116_shLuc GSE121798.MED1.HCT-116_shLuc 339 bp overlap
ChIP HCT-116_shLuc_thaps GSE121798.MED1.HCT-116_shLuc_thaps 314 bp overlap
MED26 1 dataset
ChIP U2OS_SHCTR GSE73742.MED26.U2OS_SHCTR 244 bp overlap
MYC 1 dataset
ChIP CD34 GSE85488.MYC.CD34 163 bp overlap
NANOG 3 datasets
ChIP WA01 ENCSR000BMT.NANOG.WA01 126 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 259 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 318 bp overlap
NCAPH2 1 dataset
ChIP HEK293 GSE97540.NCAPH2.HEK293 408 bp overlap
NELFE 1 dataset
ChIP K-562_NHS GSE112379.NELFE.K-562_NHS 296 bp overlap
NFKB1 1 dataset
ChIP HEK293T_2KR GSE129618.NFKB1.HEK293T_2KR 327 bp overlap
NR3C1 1 dataset
ChIP A-549 ENCSR000BJR.NR3C1.A-549 116 bp overlap
OGG1 4 datasets
ChIP HEK293 GSE89017.OGG1.HEK293 408 bp overlap
ChIP HEK293_15min GSE89017.OGG1.HEK293_15min 408 bp overlap
ChIP HEK293_30_min GSE89017.OGG1.HEK293_30_min 408 bp overlap
ChIP HEK293_60_min GSE89017.OGG1.HEK293_60_min 408 bp overlap
OLIG2 1 dataset
ChIP brain-prefrontal-cortex_2017014 GSE129039.OLIG2.brain-prefrontal-cortex_2017014 241 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 408 bp overlap
PDX1 1 dataset
ChIP hiPSC GSE125768.PDX1.hiPSC 223 bp overlap
POU5F1 9 datasets
ChIP BG03 GSE21614.POU5F1.BG03 335 bp overlap
ChIP BJ1-hTERT GSE92491.POU5F1.BJ1-hTERT 331 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 322 bp overlap
ChIP GM23338 ENCFF333SNB 249 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 176 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 290 bp overlap
ChIP SKM-1 GSE93706.POU5F1.SKM-1 265 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 333 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 93 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 372 bp overlap
RAD21 2 datasets
ChIP HUVEC-C_hypoxia GSE94872.RAD21.HUVEC-C_hypoxia 144 bp overlap
ChIP hiPSC_parental-line GSE106870.RAD21.hiPSC_parental-line 173 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 295 bp overlap
RBM39 1 dataset
ChIP Hep-G2 ENCSR339JTP.RBM39.Hep-G2 219 bp overlap
RELA 3 datasets
ChIP HEK293 GSE89017.RELA.HEK293 320 bp overlap
ChIP HEK293_TNF-1h GSE75562.RELA.HEK293_TNF-1h 294 bp overlap
ChIP HEK293_TNF-30min GSE75562.RELA.HEK293_TNF-30min 274 bp overlap
RNF2 2 datasets
ChIP WA09 GSE105028.RNF2.WA09 290 bp overlap
ChIP WA09_heat-shock GSE105028.RNF2.WA09_heat-shock 216 bp overlap
RORC 2 datasets
ChIP HCC70 GSE126380.RORC.HCC70 408 bp overlap
ChIP HCC70_XY018 GSE126380.RORC.HCC70_XY018 408 bp overlap
RUNX1 1 dataset
ChIP Jurkat GSE85524.RUNX1.Jurkat 219 bp overlap
RUNX1T1 1 dataset
ChIP Kasumi-1_CEBPA-ER_E2 GSE102697.RUNX1T1.Kasumi-1_CEBPA-ER_E2 148 bp overlap
RXR 1 dataset
ChIP TSU-1621MT GSE60477.RXR.TSU-1621MT 284 bp overlap
RXRA 1 dataset
ChIP WA01 ENCSR000BJW.RXRA.WA01 124 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 408 bp overlap
SIN3A 1 dataset
ChIP hiPSC_IB12 GSE106870.SIN3A.hiPSC_IB12 205 bp overlap
SIRT6 1 dataset
ChIP SK-MEL-239_L-C-B GSE102813.SIRT6.SK-MEL-239_L-C-B 159 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 184 bp overlap
SMARCA4 3 datasets
ChIP K-562 ENCSR643VTW.SMARCA4.K-562 312 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 169 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 262 bp overlap
SMARCB1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 232 bp overlap
SMARCC1 2 datasets
ChIP ESC S25-ESC-d0-BAF155-exp1 408 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 315 bp overlap
SMC1A 1 dataset
ChIP primary-epidermal-keratinocyte_diff_d3 GSE84657.SMC1A.primary-epidermal-keratinocyte_diff_d3 220 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 118 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 120 bp overlap
SREBP2 2 datasets
ChIP HCC70 GSE126380.SREBP2.HCC70 386 bp overlap
ChIP HCC70_XY018 GSE126380.SREBP2.HCC70_XY018 390 bp overlap
STAT3 1 dataset
ChIP WA01 ERP004237.STAT3.WA01 300 bp overlap
SUZ12 3 datasets
ChIP K-562 ENCSR000AUC.SUZ12.K-562 220 bp overlap
ChIP ProEs GSE59087.SUZ12.ProEs 146 bp overlap
ChIP hiPSC GSE124903.SUZ12.hiPSC 269 bp overlap
TAF1 2 datasets
ChIP H1 ENCFF478SZO 400 bp overlap
ChIP WA01 ENCSR000BHO.TAF1.WA01 337 bp overlap
TAF15 2 datasets
ChIP Hep-G2 ENCSR825MZS.TAF15.Hep-G2 291 bp overlap
ChIP Hep-G2 GSE120104.TAF15.Hep-G2 291 bp overlap
TAF7 1 dataset
ChIP H1 ENCFF061XZZ 334 bp overlap
TAL1 1 dataset
ChIP ME-1 GSE46044.TAL1.ME-1 236 bp overlap
TBL1X 1 dataset
ChIP HEK293T GSE35197.TBL1X.HEK293T 229 bp overlap
TBP 5 datasets
ChIP H1 ENCFF859IIO 305 bp overlap
ChIP WA01 ENCSR000ECB.TBP.WA01 314 bp overlap
ChIP hiPSC_WTa_RNase-neg GSE128135.TBP.hiPSC_WTa_RNase-neg 382 bp overlap
ChIP hiPSC_WTa_RNase-pos GSE128135.TBP.hiPSC_WTa_RNase-pos 276 bp overlap
ChIP hiPSC_WTb_RNase-neg GSE128135.TBP.hiPSC_WTb_RNase-neg 264 bp overlap
TEAD1 1 dataset
ChIP H69 GSE62274.TEAD1.H69 157 bp overlap
TFAP2C 2 datasets
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 408 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 408 bp overlap
TFIIIC 1 dataset
ChIP HEK293 GSE119418.TFIIIC.HEK293 408 bp overlap
TGIF2 1 dataset
ChIP WTC11 ENCFF649SHI 358 bp overlap
TP53 2 datasets
ChIP WTC11 ENCFF359JCU 408 bp overlap
ChIP hESC_DAMAGED GSE39912.TP53.hESC_DAMAGED 62 bp overlap
TRIM25 1 dataset
ChIP BT-549 GSE79588.TRIM25.BT-549 290 bp overlap
TRIM28 1 dataset
ChIP HCT-116 GSE72622.TRIM28.HCT-116 233 bp overlap
UBTF 1 dataset
ChIP hESC GSE76586.UBTF.hESC 193 bp overlap
WDR5 1 dataset
ChIP SMMC-7721 GSE126982.WDR5.SMMC-7721 408 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 242 bp overlap
ZBTB33 3 datasets
ChIP K-562 ENCSR876GXA.ZBTB33.K-562 308 bp overlap
ChIP K562 ENCFF875HLX 329 bp overlap
ChIP K562 ENCFF875HLX 343 bp overlap
ZBTB48 2 datasets
ChIP U2OS GSE96776.ZBTB48.U2OS 327 bp overlap
ChIP U2OS_ZBTB48-KO GSE96776.ZBTB48.U2OS_ZBTB48-KO 398 bp overlap
ZBTB7A 1 dataset
ChIP VCaP_CSS GSE123089.ZBTB7A.VCaP_CSS 355 bp overlap
ZEB1 1 dataset
ChIP neuron_bipolar_doxy_4d ENCSR418KUS.ZEB1.neuron_bipolar_doxy_4d 195 bp overlap
ZFX 2 datasets
ChIP HEK293T ENCFF402JZW 358 bp overlap
ChIP HEK293T_FLAG GSE145160.ZFX.HEK293T_FLAG 372 bp overlap
ZNF202 1 dataset
ChIP HEK293 ENCFF574FZA 325 bp overlap
ZNF711 1 dataset
ChIP HEK293T GSE145160.ZNF711.HEK293T 379 bp overlap