chr13:51,244,496–51,245,455

chr13 : 51,244,496 – 51,245,455

959 bp 117 TFs 5 linked genes

This 959 bp open chromatin element is linked to 5 target genes and is bound by 117 transcription factors.

Linked Genes

5 genes

Gene	Expression	Dist. to TSS	Distance	Link type
FAM124A		22.9 kb	Distal	Multiome
C13orf42		72.8 kb	Distal	Multiome
ENSG00000289894		75.6 kb	Distal	Multiome
INTS6-AS1		207.1 kb	Distal	Multiome
INTS6		207.8 kb	Distal	Multiome

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

117 transcription factors

AFF4 2 datasets

ChIP HeLa_DOX GSE40632.AFF4.HeLa_DOX 365 bp overlap

ChIP HeLa_DOX_EGF GSE40632.AFF4.HeLa_DOX_EGF 484 bp overlap

ChIP WTC11 ENCFF267GQJ 317 bp overlap

ASCL1 1 dataset

Motif DE_12h DE_12h-ASCL1_MA1631.2 9 bp overlap

ASH2L 1 dataset

ChIP WA01 ENCSR850KIP.ASH2L.WA01 631 bp overlap

ATF2 2 datasets

ChIP WA01 ENCSR000BQU.ATF2.WA01 667 bp overlap

ChIP WTC11 ENCFF885OBU 351 bp overlap

ChIP HUES-64 GSE104059.BRD1.HUES-64 298 bp overlap

ChIP HEK293_Ctrl GSE129407.BRD4.HEK293_Ctrl 190 bp overlap

ChIP K-562 ENCSR948QLZ.CBX1.K-562 235 bp overlap

CEBPD 1 dataset

Motif DE_12h DE_12h-CEBPD_MA0836.3 8 bp overlap

ChIP T-47D_ETOH_45 GSE62428.CHD8.T-47D_ETOH_45 201 bp overlap

CREB1 3 datasets

ChIP GM23338 ENCFF432ZEW 305 bp overlap

ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 515 bp overlap

ChIP WA01 ENCSR000BSN.CREB1.WA01 194 bp overlap

CTBP2 1 dataset

ChIP H1 ENCFF329MAX 51 bp overlap

Motif DE_12h DE_12h-CTCF_MA1929.2 31 bp overlap

Cebpa 3 datasets

ChIP BLaER1 ENCFF031ISE 363 bp overlap

ChIP BLaER1 ENCFF335XTP 188 bp overlap

ChIP BLaER1 ENCFF364PUR 332 bp overlap

ChIP WTC11 ENCFF574OKJ 451 bp overlap

ChIP K-562 ENCSR000BMD.ELF1.K-562 198 bp overlap

ELL2 2 datasets

ChIP HeLa_DOX GSE40632.ELL2.HeLa_DOX 267 bp overlap

ChIP HeLa_DOX_EGF GSE40632.ELL2.HeLa_DOX_EGF 312 bp overlap

EP300 2 datasets

ChIP H1 ENCFF927IYK 297 bp overlap

ChIP Ishikawa ENCSR000BUE.EP300.Ishikawa 216 bp overlap

ChIP SKNO-1 GSE23730.ERG.SKNO-1 225 bp overlap

ESR1 17 datasets

ChIP Ishikawa ENCSR000BIY.ESR1.Ishikawa 127 bp overlap

ChIP Ishikawa ENCSR000BQR.ESR1.Ishikawa 109 bp overlap

ChIP Ishikawa ENCSR000BKL.ESR1.Ishikawa 164 bp overlap

ChIP Ishikawa_C2-14 GSE147141.ESR1.Ishikawa_C2-14 322 bp overlap

ChIP Ishikawa_DMSO GSE132426.ESR1.Ishikawa_DMSO 189 bp overlap

ChIP Ishikawa_DMSO_D538G_clone3 GSE132426.ESR1.Ishikawa_DMSO_D538G_clone3 601 bp overlap

ChIP Ishikawa_E2 GSE132426.ESR1.Ishikawa_E2 377 bp overlap

ChIP Ishikawa_E2 GSE109891.ESR1.Ishikawa_E2 177 bp overlap

ChIP Ishikawa_E2-1h GSE129803.ESR1.Ishikawa_E2-1h 305 bp overlap

ChIP Ishikawa_E2_D538G_clone2 GSE132426.ESR1.Ishikawa_E2_D538G_clone2 600 bp overlap

ChIP Ishikawa_E2_clone2 GSE132426.ESR1.Ishikawa_E2_clone2 218 bp overlap

ChIP Ishikawa_ETV4-KO1_Mili GSE129803.ESR1.Ishikawa_ETV4-KO1_Mili 382 bp overlap

ChIP Ishikawa_ETV4-KO2_Mili GSE129803.ESR1.Ishikawa_ETV4-KO2_Mili 350 bp overlap

ChIP Ishikawa_M1-66 GSE147141.ESR1.Ishikawa_M1-66 210 bp overlap

ChIP Ishikawa_M2-3 GSE147141.ESR1.Ishikawa_M2-3 213 bp overlap

ChIP Ishikawa_siNTC-72h GSE129803.ESR1.Ishikawa_siNTC-72h 208 bp overlap

ChIP MCF-7_E2 GSE117941.ESR1.MCF-7_E2 183 bp overlap

ESRRB 1 dataset

Motif DE_12h DE_12h-ESRRB_MA0141.4 10 bp overlap

ChIP WTC11 ENCFF812SCD 437 bp overlap

ChIP PC-9 ENCSR793USK.EZH2.PC-9 264 bp overlap

EZH2_phosphoT487 1 dataset

ChIP PC-9 ENCSR702GMW.EZH2_phosphoT487.PC-9 271 bp overlap

FIGLA 2 datasets

Motif DE_12h DE_12h-FIGLA_MA0820.2 6 bp overlap

Motif DE_12h DE_12h-FIGLA_MA0820.2 6 bp overlap

FOXA1 1 dataset

ChIP breast-cancer_heregulin GSE101407.FOXA1.breast-cancer_heregulin 328 bp overlap

FOXK1 1 dataset

ChIP WTC11 ENCFF875IGU 391 bp overlap

FOXP1 1 dataset

ChIP WTC11 ENCFF338WGC 525 bp overlap

FOXP4 1 dataset

ChIP WTC11 ENCFF708TAF 377 bp overlap

GATA2 1 dataset

ChIP ME-1_CBFB-MYH11-KD GSE117138.GATA2.ME-1_CBFB-MYH11-KD 276 bp overlap

GLIS3 1 dataset

ChIP H9_plus GSE109562.GLIS3.H9_plus 437 bp overlap

GRHL1 1 dataset

Motif DE_12h DE_12h-GRHL1_MA0647.2 10 bp overlap

GRHL2 1 dataset

Motif DE_12h DE_12h-GRHL2_MA1105.3 8 bp overlap

GTF2F1 2 datasets

ChIP H1 ENCFF399TGL 345 bp overlap

ChIP WA01 ENCSR000EBP.GTF2F1.WA01 176 bp overlap

Motif DE_12h DE_12h-HLF_MA0043.4 9 bp overlap

ChIP WTC11 ENCFF506LYD 377 bp overlap

ChIP WA01 ENCSR000BKP.JUND.WA01 345 bp overlap

ChIP WTC11 ENCFF581TPB 511 bp overlap

KDM1A 2 datasets

ChIP NCI-H526_DMSO GSE66297.KDM1A.NCI-H526_DMSO 246 bp overlap

ChIP NCI-H526_DMSO GSE66297.KDM1A.NCI-H526_DMSO 325 bp overlap

ChIP WTC11 ENCFF223QFY 570 bp overlap

ChIP WTC11 ENCFF223QFY 361 bp overlap

ChIP hESC_PRIMED GSE69646.MED1.hESC_PRIMED 314 bp overlap

Motif DE_12h DE_12h-MSC_MA0665.1 10 bp overlap

MTF1 3 datasets

Motif DE_12h DE_12h-MTF1_MA0863.1 14 bp overlap

Motif DE_12h DE_12h-MTF1_MA0863.1 14 bp overlap

Motif ES_0h ES_0h-MTF1_MA0863.1 14 bp overlap

MXI1 2 datasets

Motif DE_12h DE_12h-MXI1_MA1108.3 6 bp overlap

Motif ES_0h ES_0h-MXI1_MA1108.3 6 bp overlap

ChIP H1 ENCFF794ZJT 265 bp overlap

NANOG 1 dataset

ChIP HUES-8 GSE109524.NANOG.HUES-8 742 bp overlap

NELFE 1 dataset

ChIP HeLa_DOX GSE125534.NELFE.HeLa_DOX 436 bp overlap

NFATC4 1 dataset

ChIP WTC11 ENCFF744MZI 271 bp overlap

ChIP Ishikawa ENCSR000BUT.NFIC.Ishikawa 178 bp overlap

NFIL3 1 dataset

Motif DE_12h DE_12h-NFIL3_MA0025.3 9 bp overlap

ChIP WTC11 ENCFF751ZTQ 391 bp overlap

NR1H2 1 dataset

ChIP WTC11 ENCFF386FJZ 405 bp overlap

NR3C1 5 datasets

ChIP A-549 ENCSR000BJR.NR3C1.A-549 127 bp overlap

ChIP Ishikawa ENCSR000BJC.NR3C1.Ishikawa 347 bp overlap

ChIP Ishikawa ENCSR000BLB.NR3C1.Ishikawa 234 bp overlap

ChIP Ishikawa GSE109891.NR3C1.Ishikawa 231 bp overlap

ChIP Ishikawa_Dex GSE109891.NR3C1.Ishikawa_Dex 182 bp overlap

NR3C2 2 datasets

Motif DE_12h DE_12h-NR3C2_MA0727.2 15 bp overlap

Motif ES_0h ES_0h-NR3C2_MA0727.2 15 bp overlap

ChIP WTC11 ENCFF634NAO 245 bp overlap

Motif DE_12h DE_12h-PGR_MA2327.1 9 bp overlap

Motif ES_0h ES_0h-PGR_MA2327.1 9 bp overlap

ChIP K-562 ENCSR000BQY.PML.K-562 216 bp overlap

POLR2A 7 datasets

ChIP GM23338 ENCFF450WCS 585 bp overlap

ChIP H1 ENCFF566JSR 676 bp overlap

ChIP H1 ENCFF770YBQ 471 bp overlap

ChIP H1 ENCFF833NJP 603 bp overlap

ChIP K562 ENCFF215CWW 602 bp overlap

ChIP K562 ENCFF262YXJ 576 bp overlap

ChIP K562 ENCFF514URW 405 bp overlap

POU1F1 2 datasets

Motif DE_12h DE_12h-POU1F1_MA0784.3 14 bp overlap

Motif DE_12h DE_12h-POU1F1_MA0784.3 14 bp overlap

POU2F1 4 datasets

ChIP 22Rv1_DHT GSE123565.POU2F1.22Rv1_DHT 486 bp overlap

ChIP 22Rv1_Veh GSE123565.POU2F1.22Rv1_Veh 328 bp overlap

Motif DE_12h DE_12h-POU2F1_MA0785.2 9 bp overlap

Motif DE_12h DE_12h-POU2F1_MA0785.2 9 bp overlap

POU2F2 2 datasets

Motif DE_12h DE_12h-POU2F2_MA0507.3 13 bp overlap

Motif DE_12h DE_12h-POU2F2_MA0507.3 13 bp overlap

POU2F3 4 datasets

Motif DE_12h DE_12h-POU2F3_MA0627.3 9 bp overlap

Motif DE_12h DE_12h-POU2F3_MA0627.3 9 bp overlap

Motif DE_12h DE_12h-POU2F3_MA0627.3 9 bp overlap

ChIP NCI-H1048 GSE115123.POU2F3.NCI-H1048 339 bp overlap

POU3F1 2 datasets

Motif DE_12h DE_12h-POU3F1_MA0786.2 10 bp overlap

Motif DE_12h DE_12h-POU3F1_MA0786.2 10 bp overlap

POU3F2 2 datasets

Motif DE_12h DE_12h-POU3F2_MA0787.1 12 bp overlap

Motif DE_12h DE_12h-POU3F2_MA0787.1 12 bp overlap

POU3F3 1 dataset

Motif DE_12h DE_12h-POU3F3_MA0788.1 13 bp overlap

POU3F4 2 datasets

Motif DE_12h DE_12h-POU3F4_MA0789.1 9 bp overlap

Motif DE_12h DE_12h-POU3F4_MA0789.1 9 bp overlap

POU5F1 11 datasets

Motif DE_12h DE_12h-POU5F1_MA1115.2 7 bp overlap

Motif DE_12h DE_12h-POU5F1_MA1115.2 7 bp overlap

Motif DE_12h DE_12h-POU5F1_MA1115.2 7 bp overlap

ChIP DE_D1 DED1-OCT4_Batch_II 740 bp overlap

ChIP GM23338 ENCFF333SNB 311 bp overlap

ChIP H1 ENCFF698ZAP 205 bp overlap

ChIP HUES-8 GSE109524.POU5F1.HUES-8 810 bp overlap

ChIP hESC ENCSR264RJX.POU5F1.hESC 228 bp overlap

ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 401 bp overlap

ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 757 bp overlap

ChIP hiPSC GSE56567.POU5F1.hiPSC 152 bp overlap

POU5F1B 2 datasets

Motif DE_12h DE_12h-POU5F1B_MA0792.1 9 bp overlap

Motif DE_12h DE_12h-POU5F1B_MA0792.1 9 bp overlap

POU5F1_M 1 dataset

ChIP DE_D1 DED1-OCT4-M_Batch_II 853 bp overlap

PRRX2 1 dataset

ChIP WTC11 ENCFF107JGJ 301 bp overlap

PTBP1 4 datasets

ChIP K-562 ENCSR948KMB.PTBP1.K-562 321 bp overlap

ChIP K-562 GSE120104.PTBP1.K-562 321 bp overlap

ChIP K562 ENCFF238NLS 425 bp overlap

ChIP K562 ENCFF773HPT 431 bp overlap

Prdm15 2 datasets

Motif DE_12h DE_12h-Prdm15_MA1616.2 11 bp overlap

Motif ES_0h ES_0h-Prdm15_MA1616.2 11 bp overlap

Ptf1A 2 datasets

Motif DE_12h DE_12h-Ptf1A_MA1620.2 8 bp overlap

Motif DE_12h DE_12h-Ptf1A_MA1620.2 8 bp overlap

RBFOX2 2 datasets

ChIP K-562 ENCSR822LBD.RBFOX2.K-562 264 bp overlap

ChIP K-562 GSE120104.RBFOX2.K-562 264 bp overlap

ChIP hiPSC_IID12 GSE106870.REST.hiPSC_IID12 168 bp overlap

SIN3A 1 dataset

ChIP WA01 ENCSR000BIS.SIN3A.WA01 123 bp overlap

ChIP WTC11 ENCFF891HYW 377 bp overlap

SMAD2 1 dataset

Motif DE_12h DE_12h-SMAD2_MA1964.2 6 bp overlap

SMAD3 2 datasets

ChIP H69_4Veh GSE145250.SMAD3.H69_4Veh 113 bp overlap

ChIP WTC11 ENCFF815YYQ 357 bp overlap

SMAD5 2 datasets

ChIP K-562 ENCSR000FCD.SMAD5.K-562 597 bp overlap

ChIP K562 ENCFF941FJJ 458 bp overlap

SMARCA4 1 dataset

ChIP hiPSC GSE124903.SMARCA4.hiPSC 162 bp overlap

SNAI1 1 dataset

Motif DE_12h DE_12h-SNAI1_MA1558.2 7 bp overlap

SNAI3 1 dataset

Motif DE_12h DE_12h-SNAI3_MA1559.2 9 bp overlap

SNAPC1 1 dataset

ChIP MCF-10A GSE37403.SNAPC1.MCF-10A 229 bp overlap

ChIP H1 ENCFF263FUH 321 bp overlap

ChIP WA01 ENCSR000BIR.SP1.WA01 311 bp overlap

ChIP WTC11 ENCFF688PEU 481 bp overlap

ChIP WTC11 ENCFF688PEU 501 bp overlap

ChIP WA01 ENCSR000BQV.SP4.WA01 180 bp overlap

SUPT5H 1 dataset

ChIP HeLa_DOX GSE125534.SUPT5H.HeLa_DOX 300 bp overlap

TAF1 3 datasets

ChIP H1 ENCFF478SZO 485 bp overlap

ChIP H1 ENCFF478SZO 363 bp overlap

ChIP WA01 ENCSR000BHO.TAF1.WA01 115 bp overlap

TAF7 4 datasets

ChIP H1 ENCFF061XZZ 177 bp overlap

ChIP K-562 ENCSR000BNM.TAF7.K-562 384 bp overlap

ChIP K562 ENCFF461SFY 331 bp overlap

ChIP WA01 ENCSR000BLU.TAF7.WA01 550 bp overlap

TBL1X 1 dataset

ChIP HEK293T GSE35197.TBL1X.HEK293T 189 bp overlap

TBP 10 datasets

ChIP H1 ENCFF859IIO 377 bp overlap

ChIP K-562 ENCSR000EHA.TBP.K-562 178 bp overlap

ChIP K562 ENCFF901UYM 381 bp overlap

ChIP WA01 ENCSR000ECB.TBP.WA01 303 bp overlap

ChIP hESC GSE122298.TBP.hESC 163 bp overlap

ChIP hESC_10h GSE122298.TBP.hESC_10h 210 bp overlap

ChIP hESC_10h GSE122298.TBP.hESC_10h 146 bp overlap

ChIP hESC_2h GSE122298.TBP.hESC_2h 124 bp overlap

ChIP hESC_8h GSE122298.TBP.hESC_8h 137 bp overlap

ChIP hiPSC_WTb_RNase-pos GSE128135.TBP.hiPSC_WTb_RNase-pos 232 bp overlap

TCF12 5 datasets

Motif DE_12h DE_12h-TCF12_MA1648.2 7 bp overlap

ChIP H1 ENCFF203EBH 251 bp overlap

ChIP Ishikawa ENCFF467DDW 471 bp overlap

ChIP Ishikawa ENCSR000BUV.TCF12.Ishikawa 337 bp overlap

ChIP WA01 ENCSR000BIT.TCF12.WA01 476 bp overlap

TCF3 2 datasets

Motif DE_12h DE_12h-TCF3_MA0522.4 7 bp overlap

ChIP NPC GSE154479.TCF3.NPC 496 bp overlap

Motif DE_12h DE_12h-TCF4_MA0830.3 8 bp overlap

TEAD1 1 dataset

ChIP WTC11 ENCFF502QUV 405 bp overlap

TEAD4 1 dataset

ChIP Ishikawa ENCSR000BSW.TEAD4.Ishikawa 250 bp overlap

TFAP2C 1 dataset

ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 310 bp overlap

TFCP2 1 dataset

Motif DE_12h DE_12h-TFCP2_MA1968.2 9 bp overlap

TGIF2 1 dataset

ChIP WTC11 ENCFF649SHI 420 bp overlap

Tfcp2l1 1 dataset

Motif DE_12h DE_12h-Tfcp2l1_MA0145.2 14 bp overlap

ChIP H1 ENCFF524BTL 270 bp overlap

ChIP Ishikawa ENCSR000BSY.YY1.Ishikawa 183 bp overlap

ChIP WA01 ENCSR000BKD.YY1.WA01 315 bp overlap

ZBTB21 2 datasets

ChIP WTC11 ENCFF677ZYY 401 bp overlap

ChIP WTC11 ENCFF677ZYY 401 bp overlap

ZBTB43 1 dataset

ChIP WTC11 ENCFF058JUB 443 bp overlap

ZBTB7A 1 dataset

ChIP Ishikawa ENCSR000BSZ.ZBTB7A.Ishikawa 133 bp overlap

ZEB1 2 datasets

Motif DE_12h DE_12h-ZEB1_MA0103.4 6 bp overlap

Motif DE_12h DE_12h-ZEB1_MA0103.4 6 bp overlap

ZNF184 1 dataset

ChIP WTC11 ENCFF352POG 497 bp overlap

ZNF384 1 dataset

Motif DE_12h DE_12h-ZNF384_MA1125.2 8 bp overlap

ZNF423 1 dataset

ChIP WTC11 ENCFF574PBR 317 bp overlap

ZNF462 1 dataset

ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 624 bp overlap

ZNF468 1 dataset

ChIP HEK293T GSE78099.ZNF468.HEK293T 192 bp overlap

ZNF530 1 dataset

Motif DE_12h DE_12h-ZNF530_MA1981.2 14 bp overlap

ZNF532 1 dataset

ChIP WTC11 ENCFF373VBX 285 bp overlap

ZNF547 3 datasets

Motif DE_12h DE_12h-ZNF547_MA2334.1 13 bp overlap

Motif DE_12h DE_12h-ZNF547_MA2334.1 13 bp overlap

Motif ES_0h ES_0h-ZNF547_MA2334.1 13 bp overlap

ZNF671 1 dataset

ChIP WTC11 ENCFF053HBV 265 bp overlap

ZNF768 1 dataset

Motif DE_12h DE_12h-ZNF768_MA1731.2 9 bp overlap

ZSCAN29 1 dataset

Motif DE_12h DE_12h-ZSCAN29_MA1602.2 11 bp overlap

Zic2 2 datasets

Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap

Motif ES_0h ES_0h-Zic2_MA1629.2 9 bp overlap