Predicted to enable sequence-specific DNA binding activity. Predicted to be involved in snRNA transcription by RNA polymerase II and snRNA transcription by RNA polymerase III. Located in nucleolus and nucleoplasm. [provided by Alliance of Genome Resources, Jul 2025]
Transcription factors with Perturb-seq knockdown data for SNAPC1. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = SNAPC1 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of SNAPC1, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr14:61,567,895–61,569,162 | 193.7 kb | Distal (>10kb) Multiome | 399 | |
| chr14:61,601,551–61,603,283 | 160.4 kb | Distal (>10kb) Multiome | 299 | |
| chr14:61,694,796–61,696,447 | 67.0 kb | Distal (>10kb) Multiome | 933 | |
| chr14:61,750,867–61,751,496 | 11.2 kb | Distal (>10kb) Multiome | 529 | |
| chr14:61,753,632–61,753,809 | 8.6 kb | Proximal (<10kb) | 64 | |
| chr14:61,761,767–61,763,093 | 73 bp | At TSS Multiome | 643 | |
| chr14:61,765,446–61,765,707 | 3.0 kb | Proximal (<10kb) | 40 | |
| chr14:61,812,101–61,813,600 | 50.3 kb | Distal (>10kb) Multiome | 261 |
Genomic view of the SNAPC1 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.