chr11:66,007,227–66,007,703

chr11 : 66,007,227 – 66,007,703

476 bp 100 TFs 20 linked genes

This 476 bp open chromatin element is linked to 20 target genes and is bound by 100 transcription factors.

Linked Genes

20 genes

Gene	Expression	Dist. to TSS	Distance	Link type
CST6		4.3 kb	Proximal	Proximity
BANF1		4.9 kb	Proximal	Proximity
EIF1AD		5.1 kb	Proximal	Proximity
SF3B2		44.9 kb	Distal	Multiome
SART1		45.8 kb	Distal	Multiome
PACS1		62.8 kb	Distal	Multiome
DRAP1		88.1 kb	Distal	Multiome
C11orf68		88.4 kb	Distal	Multiome
CCDC85B		116.8 kb	Distal	Multiome
FIBP		119.0 kb	Distal	Multiome
EFEMP2		133.9 kb	Distal	Multiome
MUS81		147.1 kb	Distal	Multiome
CFL1		149.3 kb	Distal	Multiome
SNX32		173.6 kb	Distal	Multiome
AP5B1		226.5 kb	Distal	Multiome
KLC2		250.3 kb	Distal	Multiome
RAB1B		261.1 kb	Distal	Multiome
YIF1A		281.6 kb	Distal	Multiome
RNASEH2C		286.7 kb	Distal	Multiome
KAT5		295.2 kb	Distal	Multiome

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

100 transcription factors

ChIP Hep-G2 ENCSR555ZMV.AGO1.Hep-G2 147 bp overlap

ChIP HepG2 ENCFF773YDL 352 bp overlap

ChIP LNCaP GSE80256.AR.LNCaP 255 bp overlap

ARID1A 3 datasets

ChIP RMG-I GSE104545.ARID1A.RMG-I 338 bp overlap

ChIP endometrial-epithelial-cells GSE106660.ARID1A.endometrial-epithelial-cells 161 bp overlap

ChIP endometrial-epithelial-cells_KO GSE106660.ARID1A.endometrial-epithelial-cells_KO 123 bp overlap

ARID2 2 datasets

ChIP Aska-SS_shSSX GSE108025.ARID2.Aska-SS_shSSX 331 bp overlap

ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.ARID2.BIN-67_lentivirus-SMARCA4-K785R 219 bp overlap

BCL11A 1 dataset

ChIP HUDEP-2_90min GSE104676.BCL11A.HUDEP-2_90min 79 bp overlap

ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 169 bp overlap

BRD4 2 datasets

ChIP Jurkat GSE83777.BRD4.Jurkat 320 bp overlap

ChIP K-562_iBET-BD2-IFNG GSE138084.BRD4.K-562_iBET-BD2-IFNG 197 bp overlap

CBFA2T3 2 datasets

ChIP K-562 ENCSR697YLJ.CBFA2T3.K-562 218 bp overlap

ChIP K562 ENCFF673OEZ 411 bp overlap

ChIP K-562 ENCSR948QLZ.CBX1.K-562 92 bp overlap

CEBPB 6 datasets

ChIP IMR-90 ENCFF468UGY 251 bp overlap

ChIP K-562 ENCSR000EHE.CEBPB.K-562 265 bp overlap

ChIP K-562 ENCSR000BRQ.CEBPB.K-562 184 bp overlap

ChIP K562 ENCFF189VBN 91 bp overlap

ChIP K562 ENCFF194QGF 321 bp overlap

ChIP K562 ENCFF584CTB 474 bp overlap

CEBPD 1 dataset

ChIP K-562 ENCSR000BVY.CEBPD.K-562 142 bp overlap

CEBPG 3 datasets

ChIP K-562 ENCSR490LWA.CEBPG.K-562 325 bp overlap

ChIP K562 ENCFF651CMK 401 bp overlap

ChIP K562 ENCFF956TPS 476 bp overlap

ChIP retina_Hu3 GSE137311.CRX.retina_Hu3 227 bp overlap

Cebpa 3 datasets

ChIP BLaER1 ENCFF093OYK 240 bp overlap

ChIP BLaER1 ENCFF274GAT 265 bp overlap

ChIP BLaER1 ENCFF364PUR 251 bp overlap

DACH1 1 dataset

ChIP K562 ENCFF574LOW 381 bp overlap

ChIP HeLa-S3 ENCSR219MKK.DEK.HeLa-S3 146 bp overlap

DMTF1 1 dataset

ChIP K562 ENCFF947QUY 324 bp overlap

ChIP K562 ENCFF775HUO 476 bp overlap

EOMES 1 dataset

ChIP hESC GSE26097.EOMES.hESC 394 bp overlap

EP300 1 dataset

ChIP Ishikawa ENCSR000BUE.EP300.Ishikawa 258 bp overlap

ChIP SKNO-1 GSE23730.ERG.SKNO-1 293 bp overlap

ESR1 5 datasets

ChIP Ishikawa_DMSO GSE132426.ESR1.Ishikawa_DMSO 149 bp overlap

ChIP Ishikawa_DMSO_D538G_clone3 GSE132426.ESR1.Ishikawa_DMSO_D538G_clone3 327 bp overlap

ChIP Ishikawa_E2 GSE132426.ESR1.Ishikawa_E2 98 bp overlap

ChIP MCF-7_PaPE-1 GSE93510.ESR1.MCF-7_PaPE-1 201 bp overlap

ChIP MCF-7_Veh_OA GSE93510.ESR1.MCF-7_Veh_OA 182 bp overlap

ETS1 2 datasets

ChIP CTV-1_DSG GSE128835.ETS1.CTV-1_DSG 199 bp overlap

ChIP CTV-1_DSG_SPI1-mut GSE128835.ETS1.CTV-1_DSG_SPI1-mut 233 bp overlap

FLI1 2 datasets

ChIP CTV-1_DSG GSE128835.FLI1.CTV-1_DSG 208 bp overlap

ChIP CTV-1_DSG_SPI1-mut GSE128835.FLI1.CTV-1_DSG_SPI1-mut 253 bp overlap

ChIP HCT-116_A7A GSE152144.FOS.HCT-116_A7A 259 bp overlap

FOSL1 1 dataset

ChIP K-562 ENCSR239ZLZ.FOSL1.K-562 249 bp overlap

FOXA2 1 dataset

ChIP DE DE-FOXA2-1 269 bp overlap

GATA1 4 datasets

ChIP HUDEP-2_30min GSE104676.GATA1.HUDEP-2_30min 102 bp overlap

ChIP K-562 GSE107726.GATA1.K-562 221 bp overlap

ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 211 bp overlap

ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 186 bp overlap

GATA4 2 datasets

ChIP DE DE-GATA4-1 476 bp overlap

ChIP DE DE-GATA4-2 476 bp overlap

GATA6 10 datasets

ChIP DE DE-GATA6-1 471 bp overlap

ChIP DE DE-GATA6-2 476 bp overlap

ChIP DE_D1 S09-DE-d1-GATA6-exp1 476 bp overlap

ChIP DE_D1 S14-DE-d1-GATA6-exp1 410 bp overlap

ChIP DE_D1 S41-DE-d1-GATA6-exp2 476 bp overlap

ChIP DE_D2 S55-DE-d2-GATA6-exp2 476 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 476 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 476 bp overlap

ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 476 bp overlap

ChIP foregut GSE117136.GATA6.foregut 364 bp overlap

GFI1B 1 dataset

ChIP K-562 ENCSR509GDT.GFI1B.K-562 370 bp overlap

GLIS2 1 dataset

ChIP HCT-116_5FU GSE125927.GLIS2.HCT-116_5FU 66 bp overlap

GTF2F1 2 datasets

ChIP K-562 GSE120104.GTF2F1.K-562 217 bp overlap

ChIP K-562 ENCSR377BLZ.GTF2F1.K-562 283 bp overlap

HDAC1 1 dataset

ChIP K-562 ENCSR711VWL.HDAC1.K-562 232 bp overlap

HDAC2 2 datasets

ChIP K-562 ENCSR893WSB.HDAC2.K-562 327 bp overlap

ChIP K562 ENCFF744ALD 383 bp overlap

HDAC8 1 dataset

ChIP K-562 ENCSR835TCD.HDAC8.K-562 293 bp overlap

HIVEP1 1 dataset

ChIP Hep-G2 ENCSR697WMX.HIVEP1.Hep-G2 180 bp overlap

HMG20A 1 dataset

ChIP K562 ENCFF840WDB 476 bp overlap

HOXB8 1 dataset

ChIP K-562 GSE121208.HOXB8.K-562 267 bp overlap

IKZF1 3 datasets

ChIP K-562 ENCSR395HWC.IKZF1.K-562 234 bp overlap

ChIP K562 ENCFF348IBL 334 bp overlap

ChIP K562 ENCFF771OHZ 383 bp overlap

ChIP DE_D1 S08-DE-d1-JUN-exp1 426 bp overlap

ChIP DE_D1 S13-DE-d1-JUN-exp1 333 bp overlap

ChIP DE_D1 S40-DE-d1-JUN-exp2 399 bp overlap

ChIP DE_D2 S02-DE-d2-JUN-exp1 462 bp overlap

ChIP DE_D2 S54-DE-d2-JUN-exp2 357 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 476 bp overlap

ChIP MDA-MB-231 GSE112444.JUN.MDA-MB-231 233 bp overlap

ChIP K-562 ENCSR000EGN.JUND.K-562 164 bp overlap

ChIP K562 ENCFF175ZTN 284 bp overlap

KDM1A 1 dataset

ChIP K-562 GSE117944.KDM1A.K-562 195 bp overlap

KDM5B 1 dataset

ChIP Hep-G2 ENCSR227MRE.KDM5B.Hep-G2 140 bp overlap

ChIP K562 ENCFF340MHH 355 bp overlap

ChIP Ishikawa ENCSR000BTY.MAX.Ishikawa 128 bp overlap

ChIP K562 ENCFF524IJO 395 bp overlap

ChIP HEK293 GSE76494.MAZ.HEK293 232 bp overlap

ChIP K-562 ENCSR000EFX.MAZ.K-562 159 bp overlap

ChIP K562 ENCFF333ZIV 371 bp overlap

MED1 4 datasets

ChIP HUVEC-C_siCTL GSE124892.MED1.HUVEC-C_siCTL 465 bp overlap

ChIP HUVEC-C_siERG GSE124892.MED1.HUVEC-C_siERG 222 bp overlap

ChIP HUVEC-C_siERG GSE124892.MED1.HUVEC-C_siERG 88 bp overlap

ChIP Jurkat GSE59657.MED1.Jurkat 100 bp overlap

MRTFB 1 dataset

ChIP A-673-clone-Asp114 GSE92738.MRTFB.A-673-clone-Asp114 285 bp overlap

ChIP Jurkat GSE59657.MYB.Jurkat 265 bp overlap

ChIP MOLT-3 GSE59657.MYB.MOLT-3 247 bp overlap

ChIP PF-382 GSE94000.MYB.PF-382 274 bp overlap

MYBL2 1 dataset

ChIP A-673 GSE119971.MYBL2.A-673 476 bp overlap

ChIP K-562 ENCSR737LTZ.MYNN.K-562 171 bp overlap

MYOD1 2 datasets

ChIP IMR-90_GM GSE128527.MYOD1.IMR-90_GM 273 bp overlap

ChIP rhabdomyosarcoma GSE50413.MYOD1.rhabdomyosarcoma 143 bp overlap

NCAPH2 1 dataset

ChIP IMR-90_FLAG_OIS GSE118494.NCAPH2.IMR-90_FLAG_OIS 109 bp overlap

NEUROD1 2 datasets

ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 205 bp overlap

ChIP K-562 ENCSR986CDX.NEUROD1.K-562 172 bp overlap

ChIP K-562 ENCSR000FCC.NFE2.K-562 171 bp overlap

NFE2L2 1 dataset

ChIP K-562 ENCSR485GKE.NFE2L2.K-562 141 bp overlap

ChIP Ishikawa ENCSR000BUT.NFIC.Ishikawa 253 bp overlap

NR2F2 1 dataset

ChIP K-562 ENCSR000BRS.NR2F2.K-562 211 bp overlap

NR3C1 1 dataset

ChIP Ishikawa ENCSR000BJC.NR3C1.Ishikawa 105 bp overlap

ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 219 bp overlap

ChIP HCT-116_ab20662 GSE97527.PAF1.HCT-116_ab20662 363 bp overlap

PATZ1 2 datasets

ChIP HEK293 ENCFF016MNJ 389 bp overlap

ChIP HEK293 ENCSR966ULI.PATZ1.HEK293 305 bp overlap

PHF21A 1 dataset

ChIP K562 ENCFF088QME 288 bp overlap

PKNOX1 1 dataset

ChIP K-562 ENCSR115SMW.PKNOX1.K-562 308 bp overlap

POLR2A 5 datasets

ChIP GM12878 ENCFF521FXC 248 bp overlap

ChIP H1 ENCFF833NJP 321 bp overlap

ChIP adrenal gland ENCFF843OBJ 190 bp overlap

ChIP adrenal gland ENCFF843OBJ 475 bp overlap

ChIP endothelial cell of umbilical vein ENCFF303XUJ 189 bp overlap

POLR2G 1 dataset

ChIP K562 ENCFF648YPL 271 bp overlap

RBFOX2 3 datasets

ChIP K-562 GSE120104.RBFOX2.K-562 239 bp overlap

ChIP K-562 ENCSR822LBD.RBFOX2.K-562 209 bp overlap

ChIP K562 ENCFF967GRF 186 bp overlap

RBM22 1 dataset

ChIP K-562 GSE120104.RBM22.K-562 150 bp overlap

RBM39 2 datasets

ChIP K-562 ENCSR764OXF.RBM39.K-562 81 bp overlap

ChIP K-562 GSE120104.RBM39.K-562 146 bp overlap

RPA2_phospho 1 dataset

ChIP HeLa GSE108172.RPA2_phospho.HeLa 411 bp overlap

SMAD1 1 dataset

ChIP K-562 ENCSR038DJJ.SMAD1.K-562 147 bp overlap

SMAD2-3 3 datasets

ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 476 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 476 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 403 bp overlap

SMAD2_3 5 datasets

ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 381 bp overlap

ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 430 bp overlap

ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 350 bp overlap

ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 476 bp overlap

ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 476 bp overlap

SMAD3 2 datasets

ChIP NCI-H441 GSE51509.SMAD3.NCI-H441 219 bp overlap

ChIP NCI-H441_SIITTF1 GSE51509.SMAD3.NCI-H441_SIITTF1 341 bp overlap

SMARCA4 8 datasets

ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-T910M 225 bp overlap

ChIP CTV-1_DSG GSE128835.SMARCA4.CTV-1_DSG 335 bp overlap

ChIP CTV-1_DSG_SPI1-mut GSE128835.SMARCA4.CTV-1_DSG_SPI1-mut 303 bp overlap

ChIP CTV-1_FLAG_SPI1-mut GSE128835.SMARCA4.CTV-1_FLAG_SPI1-mut 382 bp overlap

ChIP CTV-1_delA GSE128835.SMARCA4.CTV-1_delA 148 bp overlap

ChIP CTV-1_delQ GSE128835.SMARCA4.CTV-1_delQ 136 bp overlap

ChIP J-Lat_GFP-Clone-A72_DMSO GSE100266.SMARCA4.J-Lat_GFP-Clone-A72_DMSO 298 bp overlap

ChIP endometrial-epithelial-cells_KO GSE106660.SMARCA4.endometrial-epithelial-cells_KO 399 bp overlap

SMARCC1 1 dataset

ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4-K785R 232 bp overlap

SOX17_M 1 dataset

ChIP DE_D2 DED2-SOX17-M_Batch_II 476 bp overlap

ChIP HEK293 ENCFF733RBE 237 bp overlap

ChIP HEK293 ENCSR468IJT.SP7.HEK293 413 bp overlap

SPI1 3 datasets

ChIP CTV-1_FLAG_15perc GSE128835.SPI1.CTV-1_FLAG_15perc 169 bp overlap

ChIP CTV-1_delQ GSE128835.SPI1.CTV-1_delQ 133 bp overlap

ChIP CTV-1_delQA GSE128835.SPI1.CTV-1_delQA 109 bp overlap

SREBF2 1 dataset

ChIP HeLa-S3 ENCSR611WZO.SREBF2.HeLa-S3 263 bp overlap

STAT1_pS727 1 dataset

ChIP SET-2 GSE100566.STAT1_pS727.SET-2 216 bp overlap

TAL1 3 datasets

ChIP K-562 GSE107726.TAL1.K-562 183 bp overlap

ChIP K-562_dCas9-KRAB GSE132212.TAL1.K-562_dCas9-KRAB 189 bp overlap

ChIP MOLT-3 GSE59657.TAL1.MOLT-3 248 bp overlap

TCF12 1 dataset

ChIP Ishikawa ENCSR000BUV.TCF12.Ishikawa 283 bp overlap

TFAP4 3 datasets

ChIP Hep-G2 ENCSR103SZL.TFAP4.Hep-G2 123 bp overlap

ChIP K562 ENCFF727PXG 453 bp overlap

ChIP K562 ENCFF727PXG 253 bp overlap

TFDP1 1 dataset

ChIP K562 ENCFF584VSB 427 bp overlap

ChIP K-562 ENCSR000EFZ.UBTF.K-562 146 bp overlap

XRCC5 1 dataset

ChIP K-562 GSE120104.XRCC5.K-562 168 bp overlap

ChIP Huh-7 GSE97411.YY1.Huh-7 98 bp overlap

ChIP Ishikawa ENCFF505XQX 279 bp overlap

ZBTB11 1 dataset

ChIP K562 ENCFF215OUF 158 bp overlap

ZBTB7A 2 datasets

ChIP Ishikawa ENCFF191NFH 358 bp overlap

ChIP Ishikawa ENCSR000BSZ.ZBTB7A.Ishikawa 158 bp overlap

ChIP K-562 ENCSR557RVF.ZHX1.K-562 203 bp overlap

ChIP HEK293 ENCFF033NQQ 257 bp overlap

ZKSCAN1 1 dataset

ChIP K-562 ENCSR882ERE.ZKSCAN1.K-562 243 bp overlap

ZNF24 1 dataset

ChIP K-562 ENCSR117WTM.ZNF24.K-562 242 bp overlap

ZNF283 1 dataset

ChIP HEK293T GSE78099.ZNF283.HEK293T 191 bp overlap

ZNF554 1 dataset

ChIP HEK293 GSE76494.ZNF554.HEK293 157 bp overlap

ZNF891 1 dataset

ChIP Hep-G2 ENCSR020CLV.ZNF891.Hep-G2 94 bp overlap