SNX32

sorting nexin 32 | FLJ30934, SNX6B

Predicted to enable phosphatidylinositol binding activity. Predicted to be involved in retrograde transport, endosome to Golgi. Predicted to be located in cytoplasmic vesicle and cytosol. Predicted to be active in endosome. [provided by Alliance of Genome Resources, Jul 2025]

Biological processes 21 terms

Golgi apparatus (GO:0005794)cytosol (GO:0005829)early endosome (GO:0005769)early endosome (GO:0005769)endosomal transport (GO:0016197)endosomal transport (GO:0016197)endosome (GO:0005768)endosome to lysosome transport via multivesicular body sorting pathway (GO:0032510)late endosome (GO:0005770)late endosome (GO:0005770)neuron projection extension (GO:1990138)neuron projection extension (GO:1990138)phosphatidylinositol binding (GO:0035091)plasma membrane (GO:0005886)plasma membrane (GO:0005886)protein binding (GO:0005515)recycling endosome (GO:0055037)recycling endosome (GO:0055037)regulation of macroautophagy (GO:0016241)retrograde transport, endosome to Golgi (GO:0042147)trans-Golgi network (GO:0005802)

Expression (TPM)

TFs regulating SNX32 0 TFs

Transcription factors with Perturb-seq knockdown data for SNX32. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = SNX32 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.

TF	Mean coef	Binding	Outlier	TF→Gene link

Rows:

Elements linked to SNX32

Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of SNX32, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.

Element	Dist. to TSS	Link type	TFs
chr11:65,538,923–65,541,339	293.1 kb	Distal (>10kb) Multiome	733
chr11:65,546,285–65,547,091	287.2 kb	Distal (>10kb) Multiome	529
chr11:65,553,318–65,554,003	280.3 kb	Distal (>10kb) Multiome	195
chr11:65,569,718–65,570,745	263.6 kb	Distal (>10kb) Multiome	930
chr11:65,571,973–65,573,008	261.5 kb	Distal (>10kb) Multiome	420
chr11:65,573,788–65,575,269	259.6 kb	Distal (>10kb) Multiome	742
chr11:65,575,601–65,576,322	257.9 kb	Distal (>10kb) Multiome	527
chr11:65,591,808–65,592,698	241.7 kb	Distal (>10kb) Multiome	169
chr11:65,606,536–65,607,917	226.8 kb	Distal (>10kb) Multiome	376
chr11:65,613,478–65,614,645	219.7 kb	Distal (>10kb) Multiome	702
chr11:65,614,954–65,616,793	218.4 kb	Distal (>10kb) Multiome	830
chr11:65,637,768–65,638,920	195.8 kb	Distal (>10kb) Multiome	740
chr11:65,641,918–65,642,633	191.8 kb	Distal (>10kb) Multiome	155
chr11:65,646,814–65,647,818	186.7 kb	Distal (>10kb) Multiome	270
chr11:65,652,106–65,653,317	181.2 kb	Distal (>10kb) Multiome	901
chr11:65,662,517–65,663,930	170.9 kb	Distal (>10kb) Multiome	839
chr11:65,711,437–65,712,942	121.7 kb	Distal (>10kb) Multiome	1143
chr11:65,720,215–65,720,955	113.3 kb	Distal (>10kb) Multiome	821
chr11:65,779,808–65,781,988	53.9 kb	Distal (>10kb) Multiome	764
chr11:65,785,898–65,789,101	45.5 kb	Distal (>10kb) Multiome	478
chr11:65,817,968–65,818,502	15.7 kb	Distal (>10kb) Multiome	694
chr11:65,833,325–65,834,189	142 bp	At TSS Multiome	396
chr11:65,856,804–65,858,748	23.1 kb	Distal (>10kb) Multiome	972
chr11:65,859,034–65,861,240	26.7 kb	Distal (>10kb) Multiome	1012
chr11:65,871,920–65,874,072	39.8 kb	Distal (>10kb) Multiome	741
chr11:65,887,987–65,889,162	54.6 kb	Distal (>10kb) Multiome	824
chr11:65,890,253–65,891,457	56.7 kb	Distal (>10kb) Multiome	895
chr11:65,899,867–65,900,779	66.6 kb	Distal (>10kb) Multiome	740
chr11:65,918,507–65,920,266	85.3 kb	Distal (>10kb) Multiome	992
chr11:65,961,271–65,962,172	127.7 kb	Distal (>10kb) Multiome	834
chr11:66,001,882–66,002,962	168.5 kb	Distal (>10kb) Multiome	1022
chr11:66,007,227–66,007,703	173.6 kb	Distal (>10kb) Multiome	100
chr11:66,022,341–66,022,903	188.7 kb	Distal (>10kb) Multiome	466
chr11:66,045,170–66,045,637	211.4 kb	Distal (>10kb) Multiome	394
chr11:66,048,912–66,049,460	215.2 kb	Distal (>10kb) Multiome	83
chr11:66,051,716–66,052,760	218.2 kb	Distal (>10kb) Multiome	901
chr11:66,069,690–66,071,102	236.2 kb	Distal (>10kb) Multiome	622

Genome Browser

Genomic view of the SNX32 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.