chr7 : 96,591,576 96,592,853
1,277 bp 120 TFs 2 linked genes
This 1.3 kb open chromatin element is linked to SEM1 and SLC25A13 and is bound by 120 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
SEM1 117.9 kb Distal Multiome
SLC25A13 269.8 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr7:96,586,576 – 96,597,853
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
120 transcription factors
Source
Cell type
AR 2 datasets
ChIP A-375 GSE116189.AR.A-375 449 bp overlap
ChIP PC-3_R1881 GSE54110.AR.PC-3_R1881 185 bp overlap
ASH2L 3 datasets
ChIP H1 ENCFF399KAM 785 bp overlap
ChIP H1 ENCFF399KAM 785 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 447 bp overlap
ASXL3 1 dataset
ChIP NCI-H1963_Ab1 GSE145028.ASXL3.NCI-H1963_Ab1 361 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 142 bp overlap
ATF4 2 datasets
ChIP Jurkat_ZBTB1-KO_Asp-deprivation GSE145783.ATF4.Jurkat_ZBTB1-KO_Asp-deprivation 218 bp overlap
ChIP Jurkat_ZBTB1-KO_Asp-deprivation_cDNA GSE145783.ATF4.Jurkat_ZBTB1-KO_Asp-deprivation_cDNA 104 bp overlap
BCOR 3 datasets
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 261 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 231 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 240 bp overlap
BHLHE40 2 datasets
ChIP IMR-90 ENCSR957KYB.BHLHE40.IMR-90 132 bp overlap
ChIP K-562 ENCSR000EGV.BHLHE40.K-562 146 bp overlap
BNC2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR754GYI.BNC2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 186 bp overlap
BRD4 7 datasets
ChIP HEK293T GSE39579.BRD4.HEK293T 175 bp overlap
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 421 bp overlap
ChIP NCI-H1963 GSE145028.BRD4.NCI-H1963 336 bp overlap
ChIP NCI-H1963_shASXL3 GSE145028.BRD4.NCI-H1963_shASXL3 836 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BRD4.NCI-H1963_shNONT 675 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-neg 347 bp overlap
ChIP hESC GSE33281.BRD4.hESC 61 bp overlap
CDK9 2 datasets
ChIP MOLT-4_DMSO GSE79288.CDK9.MOLT-4_DMSO 84 bp overlap
ChIP MOLT-4_JQ1 GSE79288.CDK9.MOLT-4_JQ1 98 bp overlap
CDX2 1 dataset
Motif ES_0h ES_0h-CDX2_MA0465.3 8 bp overlap
CHD7 3 datasets
ChIP H1 ENCFF126NLU 554 bp overlap
ChIP WA01 ENCSR000AVA.CHD7.WA01 314 bp overlap
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 371 bp overlap
CREB1 1 dataset
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 181 bp overlap
CREB5 3 datasets
ChIP LNCaP GSE137775.CREB5.LNCaP 94 bp overlap
ChIP SK-N-SH ENCFF144PMI 345 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR758GOA.CREB5.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 262 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF262VBH 264 bp overlap
E2F6 2 datasets
ChIP H1 ENCFF785DWK 451 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 157 bp overlap
EP300 4 datasets
ChIP Ishikawa ENCSR000BUE.EP300.Ishikawa 205 bp overlap
ChIP hESC GSE17917.EP300.hESC 470 bp overlap
ChIP neural ENCSR843ZUP.EP300.neural 831 bp overlap
ChIP neural cell ENCFF442QNK 486 bp overlap
EZH2 4 datasets
ChIP Jurkat_KO GSE147198.EZH2.Jurkat_KO 108 bp overlap
ChIP LNCaP GSE39459.EZH2.LNCaP 289 bp overlap
ChIP THP-1 GSE135024.EZH2.THP-1 302 bp overlap
ChIP THP-1 GSE135024.EZH2.THP-1 241 bp overlap
FEZF1 3 datasets
ChIP HEK293 ENCFF528YED 275 bp overlap
ChIP HEK293 ENCSR827NWO.FEZF1.HEK293 695 bp overlap
ChIP HEK293 GSE76494.FEZF1.HEK293 188 bp overlap
FLI1 2 datasets
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 235 bp overlap
ChIP A-673_2_KRAB_eSOX2_1 GSE106914.FLI1.A-673_2_KRAB_eSOX2_1 211 bp overlap
FOS 2 datasets
ChIP MCF-7 ENCFF282FWZ 421 bp overlap
ChIP MCF-7 ENCSR569XNP.FOS.MCF-7 293 bp overlap
FOSL1 1 dataset
ChIP 143B GSE74230.FOSL1.143B 215 bp overlap
FOSL2 1 dataset
ChIP NPC_R1159Q GSE122631.FOSL2.NPC_R1159Q 219 bp overlap
FOXA1 1 dataset
ChIP 22Rv1_CST GSE129951.FOXA1.22Rv1_CST 257 bp overlap
FOXM1 1 dataset
ChIP Ishikawa ENCFF578VDD 471 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-2 268 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 420 bp overlap
GATA6 1 dataset
ChIP DE DE-GATA6-2 266 bp overlap
GLIS1 2 datasets
ChIP HEK293 ENCFF299RSE 330 bp overlap
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 412 bp overlap
HIF1A 3 datasets
ChIP PC-3_hypoxia_siCtrl GSE106305.HIF1A.PC-3_hypoxia_siCtrl 356 bp overlap
ChIP PC-3_hypoxia_siSMAD3 GSE106305.HIF1A.PC-3_hypoxia_siSMAD3 267 bp overlap
ChIP PC-3_siOC2 GSE106305.HIF1A.PC-3_siOC2 219 bp overlap
IKZF3 2 datasets
ChIP HEK293 ENCFF518OXG 371 bp overlap
ChIP HEK293 ENCSR304AMN.IKZF3.HEK293 587 bp overlap
JUN 6 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 283 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 1001 bp overlap
ChIP DE_D2 S54-DE-d2-JUN-exp2 527 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 458 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 641 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 641 bp overlap
JUND 2 datasets
ChIP H1 ENCFF010YXS 311 bp overlap
ChIP WA01 ENCSR000EBZ.JUND.WA01 127 bp overlap
KLF10 3 datasets
ChIP HEK293 ENCFF326EGX 491 bp overlap
ChIP HEK293 ENCFF326EGX 491 bp overlap
ChIP HEK293 ENCSR006GAQ.KLF10.HEK293 232 bp overlap
KLF5 2 datasets
ChIP HEK293_D418N GSE88976.KLF5.HEK293_D418N 310 bp overlap
ChIP HEK293_E419Q GSE88976.KLF5.HEK293_E419Q 332 bp overlap
KMT2A 3 datasets
ChIP HEK293T_C-term_C104 GSE90762.KMT2A.HEK293T_C-term_C104 293 bp overlap
ChIP HEK293T_N-term_C104 GSE90762.KMT2A.HEK293T_N-term_C104 637 bp overlap
ChIP HEK293T_N-term_shCtrl GSE90762.KMT2A.HEK293T_N-term_shCtrl 560 bp overlap
L3MBTL2 2 datasets
ChIP HEK293T ENCFF482NJV 297 bp overlap
ChIP HEK293T ENCSR862PNL.L3MBTL2.HEK293T 529 bp overlap
MAX 2 datasets
ChIP H1 ENCFF914VQY 357 bp overlap
ChIP WA01 ENCSR000EUP.MAX.WA01 283 bp overlap
MAZ 3 datasets
Motif DE_12h DE_12h-MAZ_MA1522.2 8 bp overlap
Motif ES_0h ES_0h-MAZ_MA1522.2 8 bp overlap
ChIP HEK293 GSE76494.MAZ.HEK293 162 bp overlap
MED1 1 dataset
ChIP hESC_PRIMED GSE69646.MED1.hESC_PRIMED 931 bp overlap
MYB 1 dataset
ChIP Jurkat GSE59657.MYB.Jurkat 123 bp overlap
MYCN 1 dataset
ChIP SHEP-21N GSE80151.MYCN.SHEP-21N 212 bp overlap
MYOG 1 dataset
ChIP RH4_Entinostat-6H GSE116344.MYOG.RH4_Entinostat-6H 187 bp overlap
Mecom 1 dataset
Motif ES_0h ES_0h-Mecom_MA0029.2 11 bp overlap
NANOG 12 datasets
ChIP GM23338 ENCFF065NZG 291 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 189 bp overlap
ChIP H1 ENCFF747ZPQ 236 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 994 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 391 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 141 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 1115 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 876 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 483 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 278 bp overlap
ChIP hESC GSE18292.NANOG.hESC 349 bp overlap
ChIP hESC GSE20650.NANOG.hESC 204 bp overlap
NFIC 2 datasets
ChIP Ishikawa ENCFF029AAD 381 bp overlap
ChIP Ishikawa ENCSR000BUT.NFIC.Ishikawa 137 bp overlap
NR3C1 2 datasets
ChIP Ishikawa ENCSR000BJC.NR3C1.Ishikawa 268 bp overlap
ChIP U2OS_SHHIC5 GSE65847.NR3C1.U2OS_SHHIC5 206 bp overlap
ONECUT2 1 dataset
ChIP PC-3_hypoxia GSE106305.ONECUT2.PC-3_hypoxia 272 bp overlap
OSR2 2 datasets
ChIP HEK293 ENCFF875BDB 421 bp overlap
ChIP HEK293 ENCSR324LTM.OSR2.HEK293 413 bp overlap
PATZ1 1 dataset
ChIP HEK293 ENCSR966ULI.PATZ1.HEK293 418 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 184 bp overlap
PDX1 1 dataset
ChIP islet ERP001456.PDX1.islet 268 bp overlap
PHIP 2 datasets
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 379 bp overlap
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 628 bp overlap
PKNOX1 2 datasets
ChIP HEK293T ENCFF174WDB 391 bp overlap
ChIP HEK293T ENCSR233FAG.PKNOX1.HEK293T 347 bp overlap
PLAG1 1 dataset
ChIP K-562 GSE111469.PLAG1.K-562 293 bp overlap
POLR2A 1 dataset
ChIP neural cell ENCFF604SPB 474 bp overlap
POU5F1 4 datasets
ChIP HUES-8 GSE109524.POU5F1.HUES-8 581 bp overlap
ChIP NCCIT GSE36134.POU5F1.NCCIT 486 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 1043 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 225 bp overlap
PRDM9 1 dataset
Motif ES_0h ES_0h-PRDM9_MA1723.2 20 bp overlap
PSIP1 2 datasets
ChIP T-REx-293 GSE117155.PSIP1.T-REx-293 195 bp overlap
ChIP T-REx-293 GSE117155.PSIP1.T-REx-293 118 bp overlap
RAD21 4 datasets
ChIP Ishikawa ENCSR000BTU.RAD21.Ishikawa 106 bp overlap
ChIP neural ENCSR198ZYJ.RAD21.neural 768 bp overlap
ChIP neural cell ENCFF564MOT 505 bp overlap
ChIP neural cell ENCFF564MOT 330 bp overlap
RBBP5 2 datasets
ChIP WA01 ENCSR000AQC.RBBP5.WA01 151 bp overlap
ChIP WA01 ENCSR000AQC.RBBP5.WA01 136 bp overlap
REL 2 datasets
Motif DE_12h DE_12h-REL_MA0101.1 10 bp overlap
Motif ES_0h ES_0h-REL_MA0101.1 10 bp overlap
REST 2 datasets
ChIP neural ENCSR000BTV.REST.neural 832 bp overlap
ChIP neural cell ENCFF882LXX 505 bp overlap
RNF2 2 datasets
ChIP A-549 ENCSR798EGJ.RNF2.A-549 236 bp overlap
ChIP SYO-1_shCt GSE139053.RNF2.SYO-1_shCt 62 bp overlap
RUNX1 1 dataset
ChIP Jurkat GSE76181.RUNX1.Jurkat 88 bp overlap
SETDB1 2 datasets
ChIP HEK293 ENCSR348AGV.SETDB1.HEK293 298 bp overlap
ChIP U2OS ENCSR000EYD.SETDB1.U2OS 298 bp overlap
SMAD3 1 dataset
ChIP PC-3_hypoxia GSE106305.SMAD3.PC-3_hypoxia 242 bp overlap
SMARCA4 4 datasets
ChIP NPC_K755R-pos GSE122631.SMARCA4.NPC_K755R-pos 191 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 289 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 367 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 960 bp overlap
SMARCC1 2 datasets
ChIP hiPSC GSE124903.SMARCC1.hiPSC 384 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 1036 bp overlap
SMC3 3 datasets
ChIP neural ENCSR404BPV.SMC3.neural 714 bp overlap
ChIP neural cell ENCFF795YGY 531 bp overlap
ChIP neural cell ENCFF795YGY 436 bp overlap
SOX2 5 datasets
ChIP HCC95 GSE137459.SOX2.HCC95 206 bp overlap
ChIP HNSC GSE69479.SOX2.HNSC 254 bp overlap
ChIP HNSC GSE69479.SOX2.HNSC 278 bp overlap
ChIP hESC GSE18292.SOX2.hESC 96 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 316 bp overlap
SP1 2 datasets
ChIP H1 ENCFF263FUH 321 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 390 bp overlap
SP2 1 dataset
ChIP HEK293 ENCSR807LQP.SP2.HEK293 265 bp overlap
SP5 2 datasets
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
Motif ES_0h ES_0h-SP5_MA1965.2 6 bp overlap
SP7 2 datasets
ChIP HEK293 ENCFF733RBE 814 bp overlap
ChIP HEK293 ENCSR468IJT.SP7.HEK293 1080 bp overlap
SPIB 1 dataset
ChIP OCI-Ly3_SHSPIB GSE56857.SPIB.OCI-Ly3_SHSPIB 184 bp overlap
SUZ12 1 dataset
ChIP K-562 ENCSR000AUC.SUZ12.K-562 108 bp overlap
TAF1 2 datasets
ChIP neural ENCSR000BTX.TAF1.neural 211 bp overlap
ChIP neural cell ENCFF468SPD 577 bp overlap
TBX18 1 dataset
Motif ES_0h ES_0h-TBX18_MA1565.2 9 bp overlap
TCF12 2 datasets
ChIP Ishikawa ENCFF467DDW 471 bp overlap
ChIP Ishikawa ENCSR000BUV.TCF12.Ishikawa 230 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 547 bp overlap
TEAD4 1 dataset
ChIP Ishikawa ENCSR000BSW.TEAD4.Ishikawa 210 bp overlap
TFAP2C 2 datasets
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 1267 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 847 bp overlap
TP53 1 dataset
ChIP hESC_DAMAGED GSE39912.TP53.hESC_DAMAGED 286 bp overlap
USF1 5 datasets
ChIP H1 ENCFF090WVU 181 bp overlap
ChIP K-562 ENCSR000BKT.USF1.K-562 221 bp overlap
ChIP K562 ENCFF633EZB 265 bp overlap
ChIP WA01 ENCSR000BIU.USF1.WA01 322 bp overlap
ChIP WTC11 ENCFF699QGS 425 bp overlap
USF2 5 datasets
ChIP H1 ENCFF434EDF 277 bp overlap
ChIP K-562 ENCSR578KEN.USF2.K-562 143 bp overlap
ChIP K562 ENCFF397QGU 265 bp overlap
ChIP WA01 ENCSR000ECD.USF2.WA01 156 bp overlap
ChIP WTC11 ENCFF139JAW 131 bp overlap
YY1 3 datasets
ChIP Hep-G2_NC GSE120104.YY1.Hep-G2_NC 607 bp overlap
ChIP Hep-G2_RBM25-KD GSE120104.YY1.Hep-G2_RBM25-KD 773 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 181 bp overlap
ZBTB17 1 dataset
ChIP HEK293 ENCFF865LIO 536 bp overlap
ZBTB20 2 datasets
ChIP HEK293 ENCFF524ADK 505 bp overlap
ChIP HEK293 ENCSR460MBI.ZBTB20.HEK293 579 bp overlap
ZEB2 1 dataset
ChIP HEK293 ENCSR417VWF.ZEB2.HEK293 675 bp overlap
ZFP64 1 dataset
ChIP HEK293 GSE76494.ZFP64.HEK293 488 bp overlap
ZNF148 2 datasets
Motif DE_12h DE_12h-ZNF148_MA1653.2 10 bp overlap
Motif ES_0h ES_0h-ZNF148_MA1653.2 10 bp overlap
ZNF184 3 datasets
ChIP HEK293 ENCFF221CII 357 bp overlap
ChIP HEK293 ENCFF221CII 357 bp overlap
ChIP HEK293 ENCSR020UPN.ZNF184.HEK293 564 bp overlap
ZNF207 1 dataset
ChIP WA09 GSE118632.ZNF207.WA09 580 bp overlap
ZNF24 2 datasets
ChIP HEK293 ENCFF308WOW 431 bp overlap
ChIP HEK293 ENCSR984MDV.ZNF24.HEK293 653 bp overlap
ZNF26 1 dataset
ChIP HEK293 ENCFF118PNN 371 bp overlap
ZNF335 4 datasets
ChIP HEK293 ENCFF784SLD 701 bp overlap
ChIP HEK293 ENCFF784SLD 725 bp overlap
ChIP HEK293 ENCFF784SLD 323 bp overlap
ChIP HEK293 ENCSR328SUD.ZNF335.HEK293 1115 bp overlap
ZNF366 3 datasets
ChIP HEK293 ENCFF799ATK 551 bp overlap
ChIP HEK293 ENCSR106EBH.ZNF366.HEK293 195 bp overlap
ChIP HEK293 ENCSR106EBH.ZNF366.HEK293 884 bp overlap
ZNF398 1 dataset
ChIP BG01V GSE133630.ZNF398.BG01V 177 bp overlap
ZNF460 2 datasets
Motif DE_12h DE_12h-ZNF460_MA1596.1 16 bp overlap
Motif ES_0h ES_0h-ZNF460_MA1596.1 16 bp overlap
ZNF518A 2 datasets
ChIP HEK293 ENCFF892ULS 441 bp overlap
ChIP HEK293 ENCSR159GFL.ZNF518A.HEK293 523 bp overlap
ZNF528 1 dataset
ChIP HEK293 GSE76494.ZNF528.HEK293 305 bp overlap
ZNF534 1 dataset
ChIP HEK293T GSE78099.ZNF534.HEK293T 330 bp overlap
ZNF554 1 dataset
ChIP HEK293 GSE76494.ZNF554.HEK293 176 bp overlap
ZNF585A 1 dataset
ChIP HEK293T GSE78099.ZNF585A.HEK293T 217 bp overlap
ZNF629 2 datasets
ChIP HEK293 ENCFF096ELQ 525 bp overlap
ChIP HEK293 ENCSR351NON.ZNF629.HEK293 422 bp overlap
ZNF660 3 datasets
ChIP HEK293 ENCFF282RUS 421 bp overlap
ChIP HEK293 ENCSR283DOU.ZNF660.HEK293 206 bp overlap
ChIP HEK293 ENCSR283DOU.ZNF660.HEK293 661 bp overlap
ZNF667 1 dataset
Motif ES_0h ES_0h-ZNF667_MA1984.2 11 bp overlap