chr3 : 185,581,887 185,582,879
992 bp 125 TFs 4 linked genes
This 992 bp open chromatin element is linked to 4 target genes and is bound by 125 transcription factors.
Linked Genes
4 genes
Distance
Link type
Gene Expression Dist. to TSS Distance Link type
SENP2 at TSS At TSS Proximity
TMEM41A 83.3 kb Distal Multiome
IGF2BP2 242.7 kb Distal Multiome
MAP3K13 299.4 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:185,576,887 – 185,587,879
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
125 transcription factors
Source
Cell type
AR 1 dataset
ChIP WTC11 ENCFF267GQJ 317 bp overlap
ARID1A 1 dataset
ChIP HAP1 GSE108387.ARID1A.HAP1 335 bp overlap
ARNTL 1 dataset
ChIP U2OS GSE44236.ARNTL.U2OS 142 bp overlap
ASCL1 1 dataset
Motif ES_0h ES_0h-ASCL1_MA1631.2 9 bp overlap
ASH2L 3 datasets
ChIP GM12878 ENCSR849WCQ.ASH2L.GM12878 200 bp overlap
ChIP H1 ENCFF399KAM 257 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 819 bp overlap
ATF2 2 datasets
ChIP GM12878 ENCFF521LQJ 75 bp overlap
ChIP WA01 ENCSR000BQU.ATF2.WA01 371 bp overlap
BCOR 3 datasets
ChIP WA01 GSE104690.BCOR.WA01 329 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 433 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 632 bp overlap
BORCS8-MEF2B,MEF2B 1 dataset
ChIP GM12878 ENCFF427QAI 150 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 485 bp overlap
BRD4 1 dataset
ChIP hESC GSE33281.BRD4.hESC 61 bp overlap
CHD1 3 datasets
ChIP H1 ENCFF998XEK 176 bp overlap
ChIP WA01 ENCSR000AQK.CHD1.WA01 176 bp overlap
ChIP WA01 ENCSR000AQK.CHD1.WA01 394 bp overlap
CHD7 2 datasets
ChIP H1 ENCFF126NLU 308 bp overlap
ChIP WA01 ENCSR000AVA.CHD7.WA01 452 bp overlap
CHD8 1 dataset
ChIP T-47D_ETOH_45 GSE62428.CHD8.T-47D_ETOH_45 156 bp overlap
CTCF 5 datasets
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 174 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_2 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_2 201 bp overlap
ChIP HAP1_clone25 GSE152721.CTCF.HAP1_clone25 251 bp overlap
ChIP hESC_NAIVE GSE69646.CTCF.hESC_NAIVE 302 bp overlap
ChIP hESC_NAIVE GSE69646.CTCF.hESC_NAIVE 225 bp overlap
Cebpa 3 datasets
ChIP BLaER1 ENCFF031ISE 253 bp overlap
ChIP BLaER1 ENCFF274GAT 323 bp overlap
ChIP BLaER1 ENCFF460KDD 251 bp overlap
DPF2 1 dataset
ChIP K562 ENCFF775HUO 222 bp overlap
EMSY 1 dataset
ChIP K562 ENCFF511ZZZ 132 bp overlap
EP300 1 dataset
ChIP WA01 ENCSR000BKK.EP300.WA01 161 bp overlap
ERF::NHLH1 2 datasets
Motif DE_12h DE_12h-ERFNHLH1_MA1938.2 16 bp overlap
Motif ES_0h ES_0h-ERFNHLH1_MA1938.2 16 bp overlap
ESR1 1 dataset
ChIP T-47D_Y537S_E2 GSE148277.ESR1.T-47D_Y537S_E2 244 bp overlap
ETV5::FIGLA 2 datasets
Motif DE_12h DE_12h-ETV5FIGLA_MA1945.2 14 bp overlap
Motif ES_0h ES_0h-ETV5FIGLA_MA1945.2 14 bp overlap
EWSR1-FLI1 2 datasets
Motif DE_12h DE_12h-EWSR1-FLI1_MA0149.1 18 bp overlap
Motif ES_0h ES_0h-EWSR1-FLI1_MA0149.1 18 bp overlap
FIGLA 1 dataset
Motif ES_0h ES_0h-FIGLA_MA0820.2 6 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 190 bp overlap
GATA1 1 dataset
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 174 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 361 bp overlap
GRHL2 1 dataset
ChIP LNCaP GSE80256.GRHL2.LNCaP 154 bp overlap
GTF3C2 1 dataset
ChIP H9 GSE94418.GTF3C2.H9 183 bp overlap
HAND2 2 datasets
Motif DE_12h DE_12h-HAND2_MA1638.2 6 bp overlap
Motif ES_0h ES_0h-HAND2_MA1638.2 6 bp overlap
HDAC1 1 dataset
ChIP K-562 ENCSR711VWL.HDAC1.K-562 135 bp overlap
HDAC2 1 dataset
ChIP WA01 ENCSR000AVB.HDAC2.WA01 219 bp overlap
HIC2 2 datasets
Motif DE_12h DE_12h-HIC2_MA0738.2 6 bp overlap
Motif ES_0h ES_0h-HIC2_MA0738.2 6 bp overlap
IKZF2 6 datasets
Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap
Motif ES_0h ES_0h-IKZF2_MA2326.1 6 bp overlap
ChIP GM12878 ENCFF238LYK 185 bp overlap
ChIP GM12878 ENCFF918AID 181 bp overlap
ChIP GM12878 ENCSR680UQE.IKZF2.GM12878 152 bp overlap
ChIP GM12878 ENCSR822AHX.IKZF2.GM12878 149 bp overlap
JUN 3 datasets
ChIP ESC S24-ESC-d0-JUN-exp1 455 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 278 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 469 bp overlap
KDM1A 1 dataset
ChIP H1 ENCFF696SGD 345 bp overlap
KDM4A 1 dataset
ChIP WA01 ENCSR000AVC.KDM4A.WA01 147 bp overlap
KLF1 2 datasets
Motif DE_12h DE_12h-KLF1_MA0493.3 8 bp overlap
Motif ES_0h ES_0h-KLF1_MA0493.3 8 bp overlap
KLF10 2 datasets
Motif DE_12h DE_12h-KLF10_MA1511.2 9 bp overlap
Motif ES_0h ES_0h-KLF10_MA1511.2 9 bp overlap
KLF11 2 datasets
Motif DE_12h DE_12h-KLF11_MA1512.2 10 bp overlap
Motif ES_0h ES_0h-KLF11_MA1512.2 10 bp overlap
KLF14 2 datasets
Motif DE_12h DE_12h-KLF14_MA0740.2 9 bp overlap
Motif ES_0h ES_0h-KLF14_MA0740.2 9 bp overlap
KLF16 2 datasets
Motif DE_12h DE_12h-KLF16_MA0741.1 11 bp overlap
Motif ES_0h ES_0h-KLF16_MA0741.1 11 bp overlap
KLF2 2 datasets
Motif DE_12h DE_12h-KLF2_MA1515.2 8 bp overlap
Motif ES_0h ES_0h-KLF2_MA1515.2 8 bp overlap
KLF4 2 datasets
Motif DE_12h DE_12h-KLF4_MA0039.5 8 bp overlap
Motif ES_0h ES_0h-KLF4_MA0039.5 8 bp overlap
KLF5 2 datasets
Motif DE_12h DE_12h-KLF5_MA0599.1 10 bp overlap
Motif ES_0h ES_0h-KLF5_MA0599.1 10 bp overlap
KLF9 2 datasets
Motif DE_12h DE_12h-KLF9_MA1107.3 11 bp overlap
Motif ES_0h ES_0h-KLF9_MA1107.3 11 bp overlap
MAZ 2 datasets
Motif DE_12h DE_12h-MAZ_MA1522.2 8 bp overlap
Motif ES_0h ES_0h-MAZ_MA1522.2 8 bp overlap
MED1 2 datasets
ChIP HCT-116_shLuc_thaps GSE121798.MED1.HCT-116_shLuc_thaps 385 bp overlap
ChIP hESC_PRIMED GSE69646.MED1.hESC_PRIMED 514 bp overlap
MEF2B 1 dataset
ChIP GM12878 ENCSR177VFS.MEF2B.GM12878 143 bp overlap
MTA3 1 dataset
ChIP GM12878 ENCFF681QPL 143 bp overlap
NANOG 11 datasets
ChIP GM23338 ENCFF065NZG 311 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 264 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 865 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 632 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 118 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 539 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 126 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 515 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 465 bp overlap
ChIP hESC GSE20650.NANOG.hESC 283 bp overlap
ChIP hESC GSE18292.NANOG.hESC 145 bp overlap
NCOA1 1 dataset
ChIP MCF-7 ERP000901.NCOA1.MCF-7 182 bp overlap
NFE2 1 dataset
ChIP K562 ENCFF047YKA 83 bp overlap
NFIA 1 dataset
ChIP K-562 GSE97661.NFIA.K-562 195 bp overlap
NFIB 2 datasets
ChIP MCF-7 ENCFF799WGQ 83 bp overlap
ChIP MCF-7 ENCSR582ZOA.NFIB.MCF-7 83 bp overlap
NFIC 3 datasets
ChIP Hep-G2 GSE108514.NFIC.Hep-G2 105 bp overlap
ChIP K-562 ENCSR796ITY.NFIC.K-562 256 bp overlap
ChIP K562 ENCFF167YID 121 bp overlap
NFYA 2 datasets
Motif DE_12h DE_12h-NFYA_MA0060.4 8 bp overlap
Motif ES_0h ES_0h-NFYA_MA0060.4 8 bp overlap
NFYC 2 datasets
Motif DE_12h DE_12h-NFYC_MA1644.2 7 bp overlap
Motif ES_0h ES_0h-NFYC_MA1644.2 7 bp overlap
NHLH2 1 dataset
Motif ES_0h ES_0h-NHLH2_MA1529.2 16 bp overlap
NIPBL 2 datasets
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 195 bp overlap
ChIP hESC_activin GSE64758.NIPBL.hESC_activin 227 bp overlap
NKX2-1 1 dataset
ChIP H9_derived-cIN GSE99937.NKX2-1.H9_derived-cIN 100 bp overlap
NRIP1 1 dataset
ChIP MCF-7 ERP005838.NRIP1.MCF-7 165 bp overlap
OTX2 1 dataset
ChIP WTC11 ENCFF634NAO 176 bp overlap
PATZ1 2 datasets
Motif DE_12h DE_12h-PATZ1_MA1961.2 11 bp overlap
Motif ES_0h ES_0h-PATZ1_MA1961.2 11 bp overlap
PBX2 1 dataset
ChIP K-562 ENCSR263DFP.PBX2.K-562 91 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 370 bp overlap
PHF8 1 dataset
ChIP WA01 ENCSR000ATK.PHF8.WA01 263 bp overlap
POLR2A 4 datasets
ChIP GM23338 ENCFF450WCS 257 bp overlap
ChIP H1 ENCFF566JSR 340 bp overlap
ChIP H1 ENCFF770YBQ 471 bp overlap
ChIP H1 ENCFF833NJP 411 bp overlap
POU5F1 13 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 599 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 734 bp overlap
ChIP NCCIT GSE36134.POU5F1.NCCIT 386 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 896 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 189 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 268 bp overlap
ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 248 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 121 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 592 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 449 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 192 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 304 bp overlap
ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 196 bp overlap
PRDM9 2 datasets
Motif DE_12h DE_12h-PRDM9_MA1723.2 20 bp overlap
Motif ES_0h ES_0h-PRDM9_MA1723.2 20 bp overlap
Ptf1A 1 dataset
Motif ES_0h ES_0h-Ptf1A_MA1620.2 8 bp overlap
RAD21 2 datasets
ChIP HAP1 GSE152721.RAD21.HAP1 272 bp overlap
ChIP HAP1_clone25 GSE152721.RAD21.HAP1_clone25 182 bp overlap
RBBP5 3 datasets
ChIP H1 ENCFF905HFL 671 bp overlap
ChIP WA01 ENCSR000AQC.RBBP5.WA01 190 bp overlap
ChIP WA01 ENCSR000AQC.RBBP5.WA01 419 bp overlap
RELB 1 dataset
ChIP GM12878 ENCSR387QUV.RELB.GM12878 62 bp overlap
RORC 2 datasets
Motif DE_12h DE_12h-RORC_MA1151.2 10 bp overlap
Motif ES_0h ES_0h-RORC_MA1151.2 10 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 241 bp overlap
SAP30 2 datasets
ChIP H1 ENCFF149IOE 258 bp overlap
ChIP WA01 ENCSR000ATR.SAP30.WA01 560 bp overlap
SIN3A 1 dataset
ChIP WA01 ENCSR000EBO.SIN3A.WA01 514 bp overlap
SKIL 2 datasets
ChIP GM12878 ENCFF171OVM 145 bp overlap
ChIP GM12878 ENCSR212YKD.SKIL.GM12878 109 bp overlap
SMAD1 1 dataset
ChIP GM12878 ENCSR813DCK.SMAD1.GM12878 149 bp overlap
SMARCA4 3 datasets
ChIP hiPSC GSE124903.SMARCA4.hiPSC 676 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 405 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 144 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 424 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 271 bp overlap
SMARCC1 3 datasets
ChIP ESC S25-ESC-d0-BAF155-exp1 586 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 460 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 461 bp overlap
SMARCE1 1 dataset
ChIP HMLE-Twist-ER_125nM_4OHT GSE96933.SMARCE1.HMLE-Twist-ER_125nM_4OHT 185 bp overlap
SNAI1 1 dataset
Motif ES_0h ES_0h-SNAI1_MA1558.2 7 bp overlap
SNAI3 1 dataset
Motif ES_0h ES_0h-SNAI3_MA1559.2 9 bp overlap
SOX2 2 datasets
ChIP hESC GSE69479.SOX2.hESC 215 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 309 bp overlap
SP1 2 datasets
ChIP H1 ENCFF263FUH 321 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 399 bp overlap
SP3 2 datasets
Motif DE_12h DE_12h-SP3_MA0746.3 11 bp overlap
Motif ES_0h ES_0h-SP3_MA0746.3 11 bp overlap
SP5 2 datasets
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
Motif ES_0h ES_0h-SP5_MA1965.2 6 bp overlap
SP8 2 datasets
Motif DE_12h DE_12h-SP8_MA0747.2 11 bp overlap
Motif ES_0h ES_0h-SP8_MA0747.2 11 bp overlap
SPIC 1 dataset
Motif ES_0h ES_0h-SPIC_MA0687.2 13 bp overlap
Stat5a 2 datasets
Motif DE_12h DE_12h-Stat5a_MA1624.2 9 bp overlap
Motif ES_0h ES_0h-Stat5a_MA1624.2 9 bp overlap
TAF1 3 datasets
ChIP H1 ENCFF478SZO 485 bp overlap
ChIP WA01 ENCSR000BHO.TAF1.WA01 519 bp overlap
ChIP WA01 ENCSR000BHO.TAF1.WA01 74 bp overlap
TBP 10 datasets
ChIP H1 ENCFF859IIO 377 bp overlap
ChIP WA01 ENCSR000ECB.TBP.WA01 415 bp overlap
ChIP hESC GSE122298.TBP.hESC 616 bp overlap
ChIP hESC_10h GSE122298.TBP.hESC_10h 421 bp overlap
ChIP hESC_2h GSE122298.TBP.hESC_2h 388 bp overlap
ChIP hESC_8h GSE122298.TBP.hESC_8h 341 bp overlap
ChIP hiPSC_WTa_RNase-neg GSE128135.TBP.hiPSC_WTa_RNase-neg 411 bp overlap
ChIP hiPSC_WTa_RNase-pos GSE128135.TBP.hiPSC_WTa_RNase-pos 413 bp overlap
ChIP hiPSC_WTb_RNase-neg GSE128135.TBP.hiPSC_WTb_RNase-neg 384 bp overlap
ChIP hiPSC_WTb_RNase-pos GSE128135.TBP.hiPSC_WTb_RNase-pos 250 bp overlap
TCF12 1 dataset
Motif ES_0h ES_0h-TCF12_MA1648.2 7 bp overlap
TCF3 2 datasets
Motif ES_0h ES_0h-TCF3_MA0522.4 7 bp overlap
ChIP NPC GSE154479.TCF3.NPC 459 bp overlap
TCF4 1 dataset
Motif ES_0h ES_0h-TCF4_MA0830.3 8 bp overlap
TERF1 1 dataset
ChIP LCL GSE55053.TERF1.LCL 228 bp overlap
TP53 1 dataset
ChIP IMR-90_APO GSE53491.TP53.IMR-90_APO 251 bp overlap
USF1 1 dataset
ChIP H1 ENCFF090WVU 174 bp overlap
USF2 1 dataset
ChIP WTC11 ENCFF139JAW 249 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 221 bp overlap
ZBTB17 2 datasets
Motif DE_12h DE_12h-ZBTB17_MA2102.1 8 bp overlap
Motif ES_0h ES_0h-ZBTB17_MA2102.1 8 bp overlap
ZEB1 1 dataset
Motif ES_0h ES_0h-ZEB1_MA0103.4 6 bp overlap
ZKSCAN5 2 datasets
Motif DE_12h DE_12h-ZKSCAN5_MA1652.2 9 bp overlap
Motif ES_0h ES_0h-ZKSCAN5_MA1652.2 9 bp overlap
ZNF148 2 datasets
Motif DE_12h DE_12h-ZNF148_MA1653.2 10 bp overlap
Motif ES_0h ES_0h-ZNF148_MA1653.2 10 bp overlap
ZNF207 1 dataset
ChIP WA09 GSE118632.ZNF207.WA09 356 bp overlap
ZNF281 2 datasets
Motif DE_12h DE_12h-ZNF281_MA1630.3 10 bp overlap
Motif ES_0h ES_0h-ZNF281_MA1630.3 10 bp overlap
ZNF283 1 dataset
ChIP HEK293T GSE78099.ZNF283.HEK293T 339 bp overlap
ZNF396 1 dataset
ChIP WTC11 ENCFF776JWJ 301 bp overlap
ZNF416 1 dataset
ChIP WTC11 ENCFF407TAZ 250 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 251 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 227 bp overlap
ZNF530 2 datasets
Motif DE_12h DE_12h-ZNF530_MA1981.2 14 bp overlap
Motif ES_0h ES_0h-ZNF530_MA1981.2 14 bp overlap
ZNF680 2 datasets
Motif DE_12h DE_12h-ZNF680_MA1729.2 11 bp overlap
Motif ES_0h ES_0h-ZNF680_MA1729.2 11 bp overlap
ZNF784 2 datasets
Motif DE_12h DE_12h-ZNF784_MA1717.2 8 bp overlap
Motif ES_0h ES_0h-ZNF784_MA1717.2 8 bp overlap