chr3 : 125,155,911 125,156,374
463 bp 134 TFs 4 linked genes
This 463 bp open chromatin element is linked to 4 target genes and is bound by 134 transcription factors.
Linked Genes
4 genes
Gene Expression Dist. to TSS Distance Link type
SLC12A8 56.7 kb Distal Multiome
HEG1 100.0 kb Distal Multiome
ZNF148 219.2 kb Distal Multiome
ITGB5 268.7 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:125,150,911 – 125,161,374
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
134 transcription factors
Source
Cell type
AR 1 dataset
ChIP THP-1_R1881 GSE131381.AR.THP-1_R1881 94 bp overlap
ARID1A 2 datasets
ChIP HAP1 GSE108387.ARID1A.HAP1 266 bp overlap
ChIP NGP GSE134626.ARID1A.NGP 293 bp overlap
ARNT 1 dataset
ChIP SK-MEL-28 GSE85352.ARNT.SK-MEL-28 463 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 245 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 275 bp overlap
BCOR 3 datasets
ChIP WA01 GSE104690.BCOR.WA01 166 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 212 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 260 bp overlap
BRD3 1 dataset
ChIP MV4-11_DMSO GSE120715.BRD3.MV4-11_DMSO 331 bp overlap
BRD4 11 datasets
ChIP COLO-741 GSE73319.BRD4.COLO-741 424 bp overlap
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 171 bp overlap
ChIP MV4-11_DMSO GSE120715.BRD4.MV4-11_DMSO 378 bp overlap
ChIP MV4-11_SGC GSE71776.BRD4.MV4-11_SGC 69 bp overlap
ChIP THP-1_DMSO GSE138084.BRD4.THP-1_DMSO 233 bp overlap
ChIP THP-1_DMSO-PMA GSE138084.BRD4.THP-1_DMSO-PMA 402 bp overlap
ChIP THP-1_iBET-BD2 GSE138084.BRD4.THP-1_iBET-BD2 210 bp overlap
ChIP THP-1_iBET-BD2-PMA GSE138084.BRD4.THP-1_iBET-BD2-PMA 225 bp overlap
ChIP cortical-interneuron GSE117508.BRD4.cortical-interneuron 306 bp overlap
ChIP cortical-interneuron_KCl-pos GSE117508.BRD4.cortical-interneuron_KCl-pos 318 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 244 bp overlap
CEBPA 1 dataset
ChIP HepG2 ENCFF175DFS 258 bp overlap
CHD4 1 dataset
ChIP 501-mel GSE134848.CHD4.501-mel 320 bp overlap
CHD7 2 datasets
ChIP WA01 ENCSR000AVA.CHD7.WA01 155 bp overlap
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 221 bp overlap
CREB1 2 datasets
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 265 bp overlap
ChIP WA01 ENCSR000BSN.CREB1.WA01 228 bp overlap
CTCF 1 dataset
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 286 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF093OYK 393 bp overlap
ChIP BLaER1 ENCFF364PUR 416 bp overlap
Crx 1 dataset
Motif DE_12h DE_12h-Crx_MA0467.3 6 bp overlap
DPRX 1 dataset
Motif DE_12h DE_12h-DPRX_MA1480.2 9 bp overlap
E2F6 3 datasets
ChIP H1 ENCFF785DWK 409 bp overlap
ChIP H1 ENCFF785DWK 248 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 240 bp overlap
EBF1 1 dataset
ChIP GM12878 ENCFF167CZS 282 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 156 bp overlap
EP300 1 dataset
ChIP WA01 ENCSR000BKK.EP300.WA01 139 bp overlap
ERG 1 dataset
ChIP SKNO-1 GSE23730.ERG.SKNO-1 195 bp overlap
FLI1 1 dataset
ChIP SKNO-1 GSE23730.FLI1.SKNO-1 261 bp overlap
FOXK1 1 dataset
ChIP Hep-G2 ENCSR603BJQ.FOXK1.Hep-G2 119 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 208 bp overlap
Foxq1 1 dataset
Motif DE_12h DE_12h-Foxq1_MA0040.2 10 bp overlap
GABPA 1 dataset
ChIP WA01 ENCSR000BIW.GABPA.WA01 217 bp overlap
GATA2 1 dataset
ChIP ME-1_CBFB-MYH11-KD GSE117138.GATA2.ME-1_CBFB-MYH11-KD 255 bp overlap
GATA6 3 datasets
ChIP DE_D1 S41-DE-d1-GATA6-exp2 271 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 230 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 284 bp overlap
GFI1 1 dataset
Motif DE_12h DE_12h-GFI1_MA0038.3 11 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 321 bp overlap
GSC 1 dataset
Motif DE_12h DE_12h-GSC_MA0648.2 6 bp overlap
GSC2 1 dataset
Motif DE_12h DE_12h-GSC2_MA0891.2 6 bp overlap
HAND2 2 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 302 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 174 bp overlap
HDAC2 3 datasets
ChIP H1 ENCFF939VKA 237 bp overlap
ChIP WA01 ENCSR000BNR.HDAC2.WA01 198 bp overlap
ChIP WA01 ENCSR000AVB.HDAC2.WA01 222 bp overlap
HIC2 1 dataset
Motif DE_12h DE_12h-HIC2_MA0738.2 6 bp overlap
HNF4A 1 dataset
ChIP Hep-G2 ENCSR469FBY.HNF4A.Hep-G2 156 bp overlap
JUN 3 datasets
ChIP DE_D2 S02-DE-d2-JUN-exp1 458 bp overlap
ChIP MDA-BoM-1833_shp27 GSE112444.JUN.MDA-BoM-1833_shp27 214 bp overlap
ChIP MDA-MB-231 GSE112444.JUN.MDA-MB-231 184 bp overlap
JUND 1 dataset
ChIP WA01 ENCSR000BKP.JUND.WA01 115 bp overlap
KDM1A 1 dataset
ChIP NCI-H526_DMSO GSE66297.KDM1A.NCI-H526_DMSO 141 bp overlap
KDM4A 1 dataset
ChIP WA01 ENCSR000AVC.KDM4A.WA01 163 bp overlap
KDM5B 1 dataset
ChIP WA01 ENCSR000AUR.KDM5B.WA01 149 bp overlap
KLF9 1 dataset
ChIP GBM1A GSE62211.KLF9.GBM1A 131 bp overlap
MAFA 1 dataset
Motif DE_12h DE_12h-MAFA_MA1521.2 13 bp overlap
MAX 3 datasets
ChIP H1 ENCFF914VQY 191 bp overlap
ChIP Hep-G2 ENCSR168DYA.MAX.Hep-G2 257 bp overlap
ChIP WTC11 ENCFF223QFY 427 bp overlap
MITF 2 datasets
ChIP 501-mel GSE61965.MITF.501-mel 292 bp overlap
ChIP melanocyte_CTR GSE50681.MITF.melanocyte_CTR 325 bp overlap
MTA2 1 dataset
ChIP GM12878 ENCSR293QAR.MTA2.GM12878 159 bp overlap
MXI1 2 datasets
Motif DE_12h DE_12h-MXI1_MA1108.3 6 bp overlap
Motif DE_12h DE_12h-MXI1_MA1108.3 6 bp overlap
MYC 1 dataset
ChIP H1 ENCFF794ZJT 265 bp overlap
MYCN 2 datasets
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 410 bp overlap
ChIP NB-1643 GSE94782.MYCN.NB-1643 157 bp overlap
Mafg 1 dataset
Motif DE_12h DE_12h-Mafg_MA0659.4 12 bp overlap
NACC2 1 dataset
ChIP HepG2 ENCFF165SVB 397 bp overlap
NANOG 3 datasets
ChIP H1 ENCFF747ZPQ 241 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 177 bp overlap
ChIP hESC GSE18292.NANOG.hESC 96 bp overlap
NFIB 1 dataset
Motif DE_12h DE_12h-NFIB_MA1643.2 17 bp overlap
NKX2-1 1 dataset
ChIP H9_derived-cIN GSE99937.NKX2-1.H9_derived-cIN 53 bp overlap
NOTCH1 1 dataset
ChIP GSC8-11_dasatinib GSE74557.NOTCH1.GSC8-11_dasatinib 180 bp overlap
OLIG2 3 datasets
ChIP brain-prefrontal-cortex_2017011 GSE129039.OLIG2.brain-prefrontal-cortex_2017011 413 bp overlap
ChIP brain-prefrontal-cortex_2017014 GSE129039.OLIG2.brain-prefrontal-cortex_2017014 215 bp overlap
ChIP brain-prefrontal-cortex_2017039 GSE129039.OLIG2.brain-prefrontal-cortex_2017039 277 bp overlap
OTX1 1 dataset
Motif DE_12h DE_12h-OTX1_MA0711.2 6 bp overlap
OTX2 1 dataset
ChIP WTC11 ENCFF634NAO 245 bp overlap
PHOX2B 1 dataset
ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 54 bp overlap
PITX1 1 dataset
Motif DE_12h DE_12h-PITX1_MA0682.3 6 bp overlap
PITX3 1 dataset
Motif DE_12h DE_12h-PITX3_MA0714.2 6 bp overlap
POLR2A 2 datasets
ChIP sigmoid colon ENCFF725QFT 169 bp overlap
ChIP upper lobe of left lung ENCFF199JUI 405 bp overlap
POU2F1 1 dataset
Motif DE_12h DE_12h-POU2F1_MA0785.2 9 bp overlap
POU2F2 1 dataset
Motif DE_12h DE_12h-POU2F2_MA0507.3 13 bp overlap
POU2F3 2 datasets
Motif DE_12h DE_12h-POU2F3_MA0627.3 9 bp overlap
ChIP NCI-H1048 GSE115123.POU2F3.NCI-H1048 242 bp overlap
POU3F1 1 dataset
Motif DE_12h DE_12h-POU3F1_MA0786.2 10 bp overlap
POU3F2 1 dataset
Motif DE_12h DE_12h-POU3F2_MA0787.1 12 bp overlap
POU3F4 1 dataset
Motif DE_12h DE_12h-POU3F4_MA0789.1 9 bp overlap
POU4F2 1 dataset
ChIP HNPC_DIF GSE74814.POU4F2.HNPC_DIF 141 bp overlap
POU5F1 5 datasets
ChIP BG03 GSE21614.POU5F1.BG03 232 bp overlap
Motif DE_12h DE_12h-POU5F1_MA1115.2 7 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 266 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 399 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 356 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 324 bp overlap
RAD21 3 datasets
ChIP HAP1 GSE152721.RAD21.HAP1 340 bp overlap
ChIP HAP1 GSE126634.RAD21.HAP1 297 bp overlap
ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 301 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 196 bp overlap
RBPJ 5 datasets
ChIP GIC GSE79734.RBPJ.GIC 188 bp overlap
ChIP GSC8-11 GSE74557.RBPJ.GSC8-11 326 bp overlap
ChIP GSC8-11_12d-das GSE74557.RBPJ.GSC8-11_12d-das 390 bp overlap
ChIP GSC8-11_dasatinib GSE74557.RBPJ.GSC8-11_dasatinib 228 bp overlap
ChIP NHEK GSE29498.RBPJ.NHEK 463 bp overlap
RELA 1 dataset
ChIP BJAB_4h-activation GSE117250.RELA.BJAB_4h-activation 186 bp overlap
REST 1 dataset
ChIP hippocampus GSE144226.REST.hippocampus 255 bp overlap
RHOXF1 1 dataset
Motif DE_12h DE_12h-RHOXF1_MA0719.2 6 bp overlap
RNF2 1 dataset
ChIP K-562 ENCSR820GND.RNF2.K-562 450 bp overlap
SIN3A 1 dataset
ChIP WA01 ENCSR000EBO.SIN3A.WA01 120 bp overlap
SMAD2 2 datasets
Motif DE_12h DE_12h-SMAD2_MA1964.2 6 bp overlap
ChIP hESC GSE29422.SMAD2.hESC 145 bp overlap
SMAD2-3 4 datasets
ChIP HUES-8 GSE109524.SMAD2-3.HUES-8 347 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 412 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 457 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 420 bp overlap
SMAD2_3 6 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 296 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 383 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 420 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 463 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 463 bp overlap
ChIP ESC S33-ESC-d0-SMAD2_3-exp2 275 bp overlap
SMAD3 5 datasets
ChIP BG03 GSE36578.SMAD3.BG03 97 bp overlap
ChIP BG03_DIFF_0H GSE36578.SMAD3.BG03_DIFF_0H 213 bp overlap
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 215 bp overlap
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 277 bp overlap
ChIP hESC GSE29422.SMAD3.hESC 211 bp overlap
SMAD4 1 dataset
ChIP hESC GSE29422.SMAD4.hESC 236 bp overlap
SMARCA4 6 datasets
ChIP 501-mel_SHCTR GSE61965.SMARCA4.501-mel_SHCTR 325 bp overlap
ChIP 501-mel_SHMITF GSE61965.SMARCA4.501-mel_SHMITF 273 bp overlap
ChIP 501-mel_SHSOX10 GSE61965.SMARCA4.501-mel_SHSOX10 382 bp overlap
ChIP K-562 ENCSR643VTW.SMARCA4.K-562 463 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 228 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 302 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 328 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 264 bp overlap
SMARCC1 2 datasets
ChIP hiPSC GSE124903.SMARCC1.hiPSC 298 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 308 bp overlap
SNAI2 1 dataset
ChIP SMS-CTR_T48 GSE137168.SNAI2.SMS-CTR_T48 170 bp overlap
SND1 1 dataset
ChIP NHEK GSE29498.SND1.NHEK 261 bp overlap
SOX10 1 dataset
ChIP 501-mel GSE61965.SOX10.501-mel 245 bp overlap
SOX12 1 dataset
Motif DE_12h DE_12h-SOX12_MA1561.2 10 bp overlap
SOX14 1 dataset
Motif DE_12h DE_12h-SOX14_MA1562.2 9 bp overlap
SOX15 1 dataset
Motif DE_12h DE_12h-SOX15_MA1152.2 7 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 322 bp overlap
SOX18 1 dataset
Motif DE_12h DE_12h-SOX18_MA1563.2 8 bp overlap
SOX2 3 datasets
ChIP HNSC GSE69479.SOX2.HNSC 381 bp overlap
ChIP hESC GSE18292.SOX2.hESC 95 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 231 bp overlap
SOX8 1 dataset
Motif DE_12h DE_12h-SOX8_MA0868.3 7 bp overlap
SOX9 1 dataset
Motif DE_12h DE_12h-SOX9_MA0077.2 8 bp overlap
SPI1 5 datasets
ChIP DC_96h_donorM GSE128834.SPI1.DC_96h_donorM 187 bp overlap
ChIP DC_LPS GSE123347.SPI1.DC_LPS 141 bp overlap
ChIP monocyte GSE31621.SPI1.monocyte 147 bp overlap
ChIP primary-monocyte_18h_donorO GSE128834.SPI1.primary-monocyte_18h_donorO 167 bp overlap
ChIP primary-monocyte_donorA_ncMO GSE128834.SPI1.primary-monocyte_donorA_ncMO 180 bp overlap
SRY 1 dataset
Motif DE_12h DE_12h-SRY_MA0084.2 7 bp overlap
STAT3 1 dataset
ChIP monocyte_IFNg-LPS GSE120943.STAT3.monocyte_IFNg-LPS 137 bp overlap
Sox5 1 dataset
Motif DE_12h DE_12h-Sox5_MA0087.3 8 bp overlap
Sox6 1 dataset
Motif DE_12h DE_12h-Sox6_MA0515.1 10 bp overlap
Sox7 1 dataset
Motif DE_12h DE_12h-Sox7_MA2095.1 10 bp overlap
T 1 dataset
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 209 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 180 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 327 bp overlap
TEAD1 1 dataset
ChIP WTC11 ENCFF502QUV 337 bp overlap
TFAP2B 1 dataset
Motif DE_12h DE_12h-TFAP2B_MA0811.2 11 bp overlap
TFAP2C 3 datasets
Motif DE_12h DE_12h-TFAP2C_MA0524.3 11 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 392 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 240 bp overlap
TFAP2E 1 dataset
Motif DE_12h DE_12h-TFAP2E_MA1569.2 9 bp overlap
TP53 1 dataset
ChIP hESC_DAMAGED GSE39912.TP53.hESC_DAMAGED 204 bp overlap
TRIM28 1 dataset
ChIP AF22 GSE84259.TRIM28.AF22 265 bp overlap
USF1 4 datasets
Motif DE_12h DE_12h-USF1_MA0093.4 10 bp overlap
ChIP H1 ENCFF090WVU 241 bp overlap
ChIP WA01 ENCSR000BIU.USF1.WA01 196 bp overlap
ChIP WTC11 ENCFF699QGS 425 bp overlap
YY1 2 datasets
ChIP H1 ENCFF524BTL 319 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 207 bp overlap
ZBTB24 1 dataset
Motif DE_12h DE_12h-ZBTB24_MA2330.1 10 bp overlap
ZNF143 2 datasets
ChIP Hep-G2 ENCSR101FJT.ZNF143.Hep-G2 107 bp overlap
ChIP WA01 ENCSR000EBW.ZNF143.WA01 167 bp overlap
ZNF16 1 dataset
Motif DE_12h DE_12h-ZNF16_MA1654.2 21 bp overlap
ZNF213 1 dataset
Motif DE_12h DE_12h-ZNF213_MA2121.1 12 bp overlap
ZNF454 1 dataset
Motif DE_12h DE_12h-ZNF454_MA1712.2 17 bp overlap
Zfx 1 dataset
Motif DE_12h DE_12h-Zfx_MA0146.3 10 bp overlap