chr2 : 9,074,800 9,075,347
547 bp 123 TFs 3 linked genes
This 547 bp open chromatin element is linked to MBOAT2, ASAP2, and KIDINS220 and is bound by 123 transcription factors.
Linked Genes
3 genes
Gene Expression Dist. to TSS Distance Link type
MBOAT2 71.3 kb Distal Multiome
ASAP2 131.8 kb Distal Multiome
KIDINS220 237.4 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:9,069,800 – 9,080,347
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
123 transcription factors
Source
Cell type
ARID1B 2 datasets
ChIP K-562 ENCSR822CCM.ARID1B.K-562 120 bp overlap
ChIP K562 ENCFF938UXQ 247 bp overlap
ASCL1 3 datasets
ChIP NCI-H2107 GSE69394.ASCL1.NCI-H2107 133 bp overlap
ChIP NCI-H889 GSE69394.ASCL1.NCI-H889 129 bp overlap
ChIP SCLC_ASCLP GSE61197.ASCL1.SCLC_ASCLP 188 bp overlap
ASH2L 2 datasets
ChIP H1 ENCFF399KAM 455 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 547 bp overlap
ATF1 1 dataset
ChIP K-562 ENCSR091GVJ.ATF1.K-562 547 bp overlap
ATF2 8 datasets
ChIP GM12878 ENCSR000BQK.ATF2.GM12878 210 bp overlap
ChIP H1 ENCFF295GZO 505 bp overlap
ChIP H1 ENCFF295GZO 304 bp overlap
ChIP Hep-G2 ENCSR047BUZ.ATF2.Hep-G2 331 bp overlap
ChIP HepG2 ENCFF955VER 241 bp overlap
ChIP K-562 ENCSR869IUD.ATF2.K-562 353 bp overlap
ChIP K562 ENCFF139ZZG 302 bp overlap
ChIP WA01 ENCSR000BQU.ATF2.WA01 431 bp overlap
ATF3 4 datasets
ChIP HCT-116_CAMP GSE74355.ATF3.HCT-116_CAMP 102 bp overlap
ChIP K-562 ENCSR028UIU.ATF3.K-562 356 bp overlap
ChIP K562 ENCFF604FPV 265 bp overlap
ChIP K562 ENCFF921JQW 478 bp overlap
ATF7 8 datasets
ChIP GM12878 ENCFF037PYH 428 bp overlap
ChIP GM12878 ENCSR014YCR.ATF7.GM12878 372 bp overlap
ChIP Hep-G2 ENCSR545FXC.ATF7.Hep-G2 272 bp overlap
ChIP HepG2 ENCFF470FKK 348 bp overlap
ChIP K-562 ENCSR972ZBV.ATF7.K-562 284 bp overlap
ChIP K562 ENCFF308SKS 421 bp overlap
ChIP MCF-7 ENCFF578WKB 332 bp overlap
ChIP MCF-7 ENCSR866QPZ.ATF7.MCF-7 317 bp overlap
BAP1 1 dataset
ChIP NCI-H1963_shASXL3 GSE145028.BAP1.NCI-H1963_shASXL3 353 bp overlap
BCL11A 3 datasets
ChIP H1 ENCFF833IPY 145 bp overlap
ChIP WA01 ENCSR000BIP.BCL11A.WA01 141 bp overlap
ChIP WA01 ENCSR000BMJ.BCL11A.WA01 220 bp overlap
BCL3 1 dataset
ChIP GM12878 ENCSR000BNQ.BCL3.GM12878 141 bp overlap
BCOR 2 datasets
ChIP WA01 GSE104690.BCOR.WA01 261 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 181 bp overlap
BHLHE40 7 datasets
ChIP GM12878 ENCFF010ZUU 331 bp overlap
ChIP GM12878 ENCFF521IZR 292 bp overlap
ChIP GM12878 ENCSR517QHU.BHLHE40.GM12878 392 bp overlap
ChIP GM12878 ENCSR987MTA.BHLHE40.GM12878 372 bp overlap
ChIP GM12878 ENCSR000DZJ.BHLHE40.GM12878 167 bp overlap
ChIP Hep-G2 ENCSR000EDT.BHLHE40.Hep-G2 186 bp overlap
ChIP K-562 ENCSR000EGV.BHLHE40.K-562 145 bp overlap
BRD2 1 dataset
ChIP MDA-MB-231_BAZ2BsiRNA GSE116879.BRD2.MDA-MB-231_BAZ2BsiRNA 214 bp overlap
BRD4 14 datasets
ChIP HEK293_sgNT GSE129407.BRD4.HEK293_sgNT 216 bp overlap
ChIP MDA-MB-231_DMSO GSE116879.BRD4.MDA-MB-231_DMSO 244 bp overlap
ChIP MDA-MB-231_DMSO_rDNA GSE116879.BRD4.MDA-MB-231_DMSO_rDNA 243 bp overlap
ChIP MDA-MB-231_JQ1 GSE116879.BRD4.MDA-MB-231_JQ1 204 bp overlap
ChIP MDA-MB-231_JQ1_MGSK2801 GSE116879.BRD4.MDA-MB-231_JQ1_MGSK2801 269 bp overlap
ChIP MDA-MB-231_JQ1_MGSK2801_rDNA GSE116879.BRD4.MDA-MB-231_JQ1_MGSK2801_rDNA 269 bp overlap
ChIP MDA-MB-231_JQ1_rDNA GSE116879.BRD4.MDA-MB-231_JQ1_rDNA 204 bp overlap
ChIP MDA-MB-231_MGSK2801 GSE116879.BRD4.MDA-MB-231_MGSK2801 303 bp overlap
ChIP MDA-MB-231_MGSK2801_rDNA GSE116879.BRD4.MDA-MB-231_MGSK2801_rDNA 303 bp overlap
ChIP NCI-H1963 GSE145028.BRD4.NCI-H1963 528 bp overlap
ChIP NCI-H1963_shASXL3 GSE145028.BRD4.NCI-H1963_shASXL3 270 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BRD4.NCI-H1963_shNONT 547 bp overlap
ChIP SW480_16h_TNF-a GSE110473.BRD4.SW480_16h_TNF-a 281 bp overlap
ChIP keratinocyte GSE140992.BRD4.keratinocyte 276 bp overlap
BRD9 3 datasets
ChIP MDA-MB-231_JQ1 GSE116879.BRD9.MDA-MB-231_JQ1 272 bp overlap
ChIP MDA-MB-231_JQ1_MGSK2801 GSE116879.BRD9.MDA-MB-231_JQ1_MGSK2801 199 bp overlap
ChIP MDA-MB-231_MGSK2801 GSE116879.BRD9.MDA-MB-231_MGSK2801 277 bp overlap
CDK6 1 dataset
ChIP KB_IL GSE52469.CDK6.KB_IL 112 bp overlap
CDX2 2 datasets
ChIP LS180 GSE31939.CDX2.LS180 223 bp overlap
ChIP LS180_125 GSE31939.CDX2.LS180_125 276 bp overlap
CHD7 2 datasets
ChIP H1 ENCFF126NLU 508 bp overlap
ChIP WA01 ENCSR000AVA.CHD7.WA01 195 bp overlap
CREB1 3 datasets
ChIP GM23338 ENCFF432ZEW 305 bp overlap
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 434 bp overlap
ChIP WA01 ENCSR000BSN.CREB1.WA01 265 bp overlap
CREBBP 1 dataset
ChIP keratinocyte GSE140991.CREBBP.keratinocyte 341 bp overlap
CTCF 1 dataset
ChIP K-562 ENCSR000AKO.CTCF.K-562 98 bp overlap
CTNNB1 1 dataset
ChIP LS180_125 GSE31939.CTNNB1.LS180_125 113 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF262VBH 251 bp overlap
ChIP BLaER1 ENCFF460KDD 222 bp overlap
E2F6 1 dataset
ChIP WA01 ENCSR000BSI.E2F6.WA01 257 bp overlap
EGR1 3 datasets
Motif DE_12h DE_12h-EGR1_MA0162.5 10 bp overlap
Motif ES_0h ES_0h-EGR1_MA0162.5 10 bp overlap
ChIP H1 ENCFF451BLH 261 bp overlap
EP300 2 datasets
ChIP H1 ENCFF927IYK 297 bp overlap
ChIP WA01 ENCSR000BKK.EP300.WA01 278 bp overlap
FIGLA 2 datasets
Motif DE_12h DE_12h-FIGLA_MA0820.2 6 bp overlap
Motif ES_0h ES_0h-FIGLA_MA0820.2 6 bp overlap
FOSL1 1 dataset
ChIP MDA-MB-231 GSE95303.FOSL1.MDA-MB-231 143 bp overlap
FOXS1 1 dataset
Motif ES_0h ES_0h-FOXS1_MA2118.1 8 bp overlap
GATA2 1 dataset
ChIP K562 ENCFF830LLA 203 bp overlap
GATA6 2 datasets
ChIP DE_D1 S09-DE-d1-GATA6-exp1 263 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 259 bp overlap
GRHL2 2 datasets
Motif DE_12h DE_12h-GRHL2_MA1105.3 8 bp overlap
Motif ES_0h ES_0h-GRHL2_MA1105.3 8 bp overlap
HDAC2 1 dataset
ChIP WA01 ENCSR000AVB.HDAC2.WA01 162 bp overlap
HDAC8 1 dataset
ChIP K562 ENCFF452GZK 62 bp overlap
HDGF 1 dataset
ChIP K-562 ENCSR563YDA.HDGF.K-562 359 bp overlap
HOXA3 1 dataset
Motif ES_0h ES_0h-HOXA3_MA2119.1 7 bp overlap
HOXA4 1 dataset
Motif ES_0h ES_0h-HOXA4_MA1496.2 7 bp overlap
HOXB4 1 dataset
Motif ES_0h ES_0h-HOXB4_MA1499.2 6 bp overlap
HOXC4 1 dataset
Motif ES_0h ES_0h-HOXC4_MA1504.2 6 bp overlap
HOXD4 1 dataset
Motif ES_0h ES_0h-HOXD4_MA1507.2 6 bp overlap
Hic1 1 dataset
Motif ES_0h ES_0h-Hic1_MA0739.2 8 bp overlap
ID3 1 dataset
ChIP K-562 ENCSR005NMT.ID3.K-562 334 bp overlap
IRF1 1 dataset
ChIP K-562 ENCSR854MCV.IRF1.K-562 135 bp overlap
IRF9 1 dataset
ChIP K-562 ENCSR926KTP.IRF9.K-562 250 bp overlap
JDP2 1 dataset
Motif ES_0h ES_0h-JDP2_MA0655.1 9 bp overlap
JUN 8 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 464 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 478 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 286 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 489 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 472 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 469 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 469 bp overlap
ChIP Hep-G2 ENCSR000EEK.JUN.Hep-G2 179 bp overlap
JUNB 1 dataset
ChIP K-562 ENCSR000DJY.JUNB.K-562 141 bp overlap
JUND 8 datasets
Motif ES_0h ES_0h-JUND_MA0491.3 9 bp overlap
ChIP H1 ENCFF010YXS 311 bp overlap
ChIP H1 ENCFF468JZD 231 bp overlap
ChIP K-562 ENCSR000EGN.JUND.K-562 163 bp overlap
ChIP K-562 ENCSR000EGN.JUND.K-562 52 bp overlap
ChIP K562 ENCFF336RCR 348 bp overlap
ChIP WA01 ENCSR000BKP.JUND.WA01 214 bp overlap
ChIP WA01 ENCSR000EBZ.JUND.WA01 186 bp overlap
KDM4A 1 dataset
ChIP WA01 ENCSR000AVC.KDM4A.WA01 141 bp overlap
KLF13 1 dataset
Motif ES_0h ES_0h-KLF13_MA0657.2 17 bp overlap
KLF17 1 dataset
ChIP HEK293 ENCSR065WUF.KLF17.HEK293 262 bp overlap
KLF3 1 dataset
ChIP keratinocyte GSE140991.KLF3.keratinocyte 215 bp overlap
KLF4 1 dataset
ChIP keratinocyte_diff GSE57702.KLF4.keratinocyte_diff 139 bp overlap
LEF1 1 dataset
ChIP K562 ENCFF889WGL 325 bp overlap
MAX 3 datasets
ChIP H1 ENCFF601FOM 325 bp overlap
ChIP H1 ENCFF914VQY 357 bp overlap
ChIP WA01 ENCSR000EUP.MAX.WA01 234 bp overlap
MGA 2 datasets
Motif DE_12h DE_12h-MGA_MA0801.1 8 bp overlap
Motif ES_0h ES_0h-MGA_MA0801.1 8 bp overlap
MITF 2 datasets
ChIP 501-mel GSE61965.MITF.501-mel 169 bp overlap
ChIP K-562 ENCSR797SWM.MITF.K-562 284 bp overlap
MTA2 1 dataset
ChIP K-562 ENCSR411UYA.MTA2.K-562 339 bp overlap
MTA3 1 dataset
ChIP K-562 ENCSR914NEI.MTA3.K-562 263 bp overlap
NANOG 10 datasets
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 116 bp overlap
ChIP H1 ENCFF747ZPQ 241 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 547 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 538 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 304 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 397 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 380 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 314 bp overlap
ChIP hESC GSE20650.NANOG.hESC 265 bp overlap
ChIP hESC GSE18292.NANOG.hESC 162 bp overlap
NFE2 1 dataset
Motif ES_0h ES_0h-NFE2_MA0841.2 10 bp overlap
NFIA 1 dataset
Motif ES_0h ES_0h-NFIA_MA0670.2 6 bp overlap
NFIX 1 dataset
Motif ES_0h ES_0h-NFIX_MA0671.2 6 bp overlap
NKX6-3 1 dataset
Motif ES_0h ES_0h-NKX6-3_MA1530.2 8 bp overlap
NR3C1 1 dataset
ChIP MDA-MB-231 GSE152203.NR3C1.MDA-MB-231 185 bp overlap
POU5F1 10 datasets
ChIP BG03 GSE21614.POU5F1.BG03 190 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 500 bp overlap
ChIP GM23338 ENCFF333SNB 311 bp overlap
ChIP H1 ENCFF698ZAP 205 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 547 bp overlap
ChIP WA01 ENCSR000BMU.POU5F1.WA01 208 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 120 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 370 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 314 bp overlap
ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 244 bp overlap
PROX1 1 dataset
ChIP SW480 GSE60390.PROX1.SW480 209 bp overlap
RB1 1 dataset
ChIP K-562 ENCSR506CVF.RB1.K-562 124 bp overlap
RBBP5 2 datasets
ChIP H1 ENCFF905HFL 388 bp overlap
ChIP WA01 ENCSR000AQC.RBBP5.WA01 247 bp overlap
RELA 1 dataset
ChIP SW480_16h_TNFa GSE102796.RELA.SW480_16h_TNFa 291 bp overlap
REST 1 dataset
ChIP colorectal-cancer_shCDH1 GSE112555.REST.colorectal-cancer_shCDH1 184 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 225 bp overlap
SIN3A 3 datasets
ChIP WA01 ENCSR000BIS.SIN3A.WA01 157 bp overlap
ChIP hiPSC_IB12 GSE106870.SIN3A.hiPSC_IB12 267 bp overlap
ChIP hiPSC_IID12 GSE106870.SIN3A.hiPSC_IID12 174 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 383 bp overlap
SMAD3 1 dataset
ChIP BG03 GSE21614.SMAD3.BG03 221 bp overlap
SMARCA4 3 datasets
ChIP 501-mel_SHSOX10 GSE61965.SMARCA4.501-mel_SHSOX10 436 bp overlap
ChIP K-562 ENCSR587OQL.SMARCA4.K-562 178 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 401 bp overlap
SMARCB1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 277 bp overlap
SMARCC1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 398 bp overlap
SOX2 3 datasets
ChIP hESC GSE69479.SOX2.hESC 183 bp overlap
ChIP hESC GSE18292.SOX2.hESC 96 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 447 bp overlap
SP1 2 datasets
ChIP H1 ENCFF263FUH 321 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 380 bp overlap
SP4 1 dataset
ChIP WA01 ENCSR000BQV.SP4.WA01 153 bp overlap
SP5 2 datasets
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
Motif ES_0h ES_0h-SP5_MA1965.2 6 bp overlap
SP7 2 datasets
ChIP HEK293 ENCFF733RBE 299 bp overlap
ChIP HEK293 ENCSR468IJT.SP7.HEK293 361 bp overlap
SREBF2 1 dataset
Motif ES_0h ES_0h-SREBF2_MA0828.3 10 bp overlap
STAT3 3 datasets
Motif ES_0h ES_0h-STAT3_MA0144.3 9 bp overlap
ChIP MDA-MB-231 GSE152203.STAT3.MDA-MB-231 254 bp overlap
ChIP MDA-MB-231_EtOH GSE85579.STAT3.MDA-MB-231_EtOH 179 bp overlap
Spz1 3 datasets
Motif DE_12h DE_12h-Spz1_MA0111.1 11 bp overlap
Motif ES_0h ES_0h-Spz1_MA0111.1 11 bp overlap
Motif ES_0h ES_0h-Spz1_MA0111.1 11 bp overlap
TAF1 2 datasets
ChIP H1 ENCFF478SZO 306 bp overlap
ChIP WA01 ENCSR000BHO.TAF1.WA01 318 bp overlap
TBX1 2 datasets
Motif DE_12h DE_12h-TBX1_MA0805.1 8 bp overlap
Motif ES_0h ES_0h-TBX1_MA0805.1 8 bp overlap
TBX15 2 datasets
Motif DE_12h DE_12h-TBX15_MA0803.1 8 bp overlap
Motif ES_0h ES_0h-TBX15_MA0803.1 8 bp overlap
TBX18 2 datasets
Motif DE_12h DE_12h-TBX18_MA1565.2 9 bp overlap
Motif ES_0h ES_0h-TBX18_MA1565.2 9 bp overlap
TBX5 4 datasets
Motif DE_12h DE_12h-TBX5_MA0807.1 8 bp overlap
Motif DE_12h DE_12h-TBX5_MA0807.1 8 bp overlap
Motif ES_0h ES_0h-TBX5_MA0807.1 8 bp overlap
Motif ES_0h ES_0h-TBX5_MA0807.1 8 bp overlap
TCF12 3 datasets
ChIP GM12878 ENCSR000BGZ.TCF12.GM12878 95 bp overlap
ChIP H1 ENCFF203EBH 251 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 316 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 359 bp overlap
TEAD1 1 dataset
ChIP WTC11 ENCFF502QUV 405 bp overlap
TEAD4 1 dataset
ChIP H1 ENCFF778PAX 245 bp overlap
TP53 3 datasets
ChIP MDA-MB-231 GSE95303.TP53.MDA-MB-231 249 bp overlap
ChIP SW480_0h_TNFa GSE102796.TP53.SW480_0h_TNFa 418 bp overlap
ChIP SW480_shp53_16h_TNF-a GSE115985.TP53.SW480_shp53_16h_TNF-a 229 bp overlap
Tbx6 2 datasets
Motif DE_12h DE_12h-Tbx6_MA1567.3 9 bp overlap
Motif ES_0h ES_0h-Tbx6_MA1567.3 9 bp overlap
USF1 2 datasets
ChIP H1 ENCFF090WVU 241 bp overlap
ChIP WA01 ENCSR000BIU.USF1.WA01 355 bp overlap
USF2 2 datasets
Motif ES_0h ES_0h-USF2_MA0526.5 10 bp overlap
ChIP GM12878 GSE97661.USF2.GM12878 152 bp overlap
YY1 3 datasets
ChIP H1 ENCFF524BTL 337 bp overlap
ChIP H1 ENCFF524BTL 223 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 427 bp overlap
ZBTB12 1 dataset
Motif ES_0h ES_0h-ZBTB12_MA1649.2 7 bp overlap
ZEB1 2 datasets
Motif DE_12h DE_12h-ZEB1_MA0103.4 6 bp overlap
Motif ES_0h ES_0h-ZEB1_MA0103.4 6 bp overlap
ZEB2 1 dataset
ChIP K-562 ENCSR004GKA.ZEB2.K-562 408 bp overlap
ZFP37 1 dataset
ChIP HEK293 ENCSR365GRX.ZFP37.HEK293 204 bp overlap
ZNF133 2 datasets
ChIP HEK293 ENCFF844RST 357 bp overlap
ChIP HEK293 ENCSR283MWQ.ZNF133.HEK293 225 bp overlap
ZNF189 2 datasets
ChIP HEK293 ENCFF638TIB 450 bp overlap
ChIP HEK293 ENCSR163RYW.ZNF189.HEK293 296 bp overlap
ZNF382 1 dataset
Motif ES_0h ES_0h-ZNF382_MA1594.1 24 bp overlap
ZNF395 2 datasets
ChIP K562 ENCFF464EIT 497 bp overlap
ChIP K562 ENCFF464EIT 275 bp overlap
ZNF554 1 dataset
ChIP HEK293 GSE76494.ZNF554.HEK293 195 bp overlap
ZNF592 2 datasets
ChIP K-562 ENCSR249BHQ.ZNF592.K-562 183 bp overlap
ChIP K562 ENCFF547OSS 149 bp overlap
Zfp335 2 datasets
Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap
Motif ES_0h ES_0h-Zfp335_MA2002.2 7 bp overlap