ASAP2
ArfGAP with SH3 domain, ankyrin repeat and PH domain 2 | CENTB3, KIAA0400, PAP, SHAG1, DDEF2

This gene encodes a multidomain protein containing an N-terminal alpha-helical region with a coiled-coil motif, followed by a pleckstrin homology (PH) domain, an Arf-GAP domain, an ankyrin homology region, a proline-rich region, and a C-terminal Src homology 3 (SH3) domain. The protein localizes in the Golgi apparatus and at the plasma membrane, where it colocalizes with protein tyrosine kinase 2-beta (PYK2). The encoded protein forms a stable complex with PYK2 in vivo. This interaction appears to be mediated by binding of its SH3 domain to the C-terminal proline-rich domain of PYK2. The encoded protein is tyrosine phosphorylated by activated PYK2. It has catalytic activity for class I and II ArfGAPs in vitro, and can bind the class III Arf ARF6 without immediate GAP activity. The encoded protein is believed to function as an ARF GAP that controls ARF-mediated vesicle budding when recruited to Golgi membranes. In addition, it functions as a substrate and downstream target for PYK2 and SRC, a pathway that may be involved in the regulation of vesicular transport. Multiple transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Sep 2008]

Member of: DE-3 DE-3.35
Biological processes 9 terms
Expression (TPM)
ASAP2 — as a Regulated Gene

TFs regulating ASAP2 0 TFs

Transcription factors with Perturb-seq knockdown data for ASAP2. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = ASAP2 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.

Data: Effect:
TF Mean coef Binding Outlier TF→Gene link

Elements linked to ASAP2

Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of ASAP2, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.

Accessibility Element Dist. to TSS Link type TFs
chr2:9,002,394–9,004,716 202.9 kb Distal (>10kb) Multiome 676
chr2:9,074,800–9,075,347 131.8 kb Distal (>10kb) Multiome 123
chr2:9,095,563–9,096,416 110.9 kb Distal (>10kb) Multiome 192
chr2:9,110,578–9,111,244 95.8 kb Distal (>10kb) Multiome 147
chr2:9,142,361–9,143,365 64.0 kb Distal (>10kb) Multiome 712
chr2:9,177,942–9,178,829 28.4 kb Distal (>10kb) Multiome 196
chr2:9,205,968–9,208,238 128 bp At TSS Multiome 800
chr2:9,210,071–9,210,507 3.3 kb Proximal (<10kb) 117
chr2:9,218,015–9,218,554 11.4 kb Distal (>10kb) Multiome 107
chr2:9,422,555–9,424,057 216.7 kb Distal (>10kb) Multiome 1016
chr2:9,473,505–9,475,238 267.9 kb Distal (>10kb) Multiome 602
chr2:9,475,498–9,477,288 269.9 kb Distal (>10kb) Multiome 228

Genome Browser

Genomic view of the ASAP2 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.

chr2:8,992,394 – 9,487,288
Proximal 1 kb Distal 10 kb Multiome HiCAR ATAC-seq RNA-seq