This gene encodes a multidomain protein containing an N-terminal alpha-helical region with a coiled-coil motif, followed by a pleckstrin homology (PH) domain, an Arf-GAP domain, an ankyrin homology region, a proline-rich region, and a C-terminal Src homology 3 (SH3) domain. The protein localizes in the Golgi apparatus and at the plasma membrane, where it colocalizes with protein tyrosine kinase 2-beta (PYK2). The encoded protein forms a stable complex with PYK2 in vivo. This interaction appears to be mediated by binding of its SH3 domain to the C-terminal proline-rich domain of PYK2. The encoded protein is tyrosine phosphorylated by activated PYK2. It has catalytic activity for class I and II ArfGAPs in vitro, and can bind the class III Arf ARF6 without immediate GAP activity. The encoded protein is believed to function as an ARF GAP that controls ARF-mediated vesicle budding when recruited to Golgi membranes. In addition, it functions as a substrate and downstream target for PYK2 and SRC, a pathway that may be involved in the regulation of vesicular transport. Multiple transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Sep 2008]
Transcription factors with Perturb-seq knockdown data for ASAP2. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = ASAP2 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of ASAP2, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr2:9,002,394–9,004,716 | 202.9 kb | Distal (>10kb) Multiome | 676 | |
| chr2:9,074,800–9,075,347 | 131.8 kb | Distal (>10kb) Multiome | 123 | |
| chr2:9,095,563–9,096,416 | 110.9 kb | Distal (>10kb) Multiome | 192 | |
| chr2:9,110,578–9,111,244 | 95.8 kb | Distal (>10kb) Multiome | 147 | |
| chr2:9,142,361–9,143,365 | 64.0 kb | Distal (>10kb) Multiome | 712 | |
| chr2:9,177,942–9,178,829 | 28.4 kb | Distal (>10kb) Multiome | 196 | |
| chr2:9,205,968–9,208,238 | 128 bp | At TSS Multiome | 800 | |
| chr2:9,210,071–9,210,507 | 3.3 kb | Proximal (<10kb) | 117 | |
| chr2:9,218,015–9,218,554 | 11.4 kb | Distal (>10kb) Multiome | 107 | |
| chr2:9,422,555–9,424,057 | 216.7 kb | Distal (>10kb) Multiome | 1016 | |
| chr2:9,473,505–9,475,238 | 267.9 kb | Distal (>10kb) Multiome | 602 | |
| chr2:9,475,498–9,477,288 | 269.9 kb | Distal (>10kb) Multiome | 228 |
Genomic view of the ASAP2 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.