chr7 : 2,824,789 2,825,101
312 bp 118 TFs 1 linked gene
This 312 bp open chromatin element is linked to GNA12 and is bound by 118 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
GNA12 9.5 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr7:2,819,789 – 2,830,101
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
118 transcription factors
Source
Cell type
AR 1 dataset
ChIP LNCaP-abl GSE39459.AR.LNCaP-abl 117 bp overlap
ARID3A 3 datasets
ChIP GM12878 ENCFF006WWZ 114 bp overlap
ChIP GM12878 ENCFF006WWZ 312 bp overlap
ChIP GM12878 ENCSR778UBR.ARID3A.GM12878 160 bp overlap
ARID4B 1 dataset
ChIP WTC11 ENCFF441HDK 90 bp overlap
ASH2L 2 datasets
ChIP H1 ENCFF399KAM 215 bp overlap
ChIP H1 ENCFF399KAM 201 bp overlap
ATF2 4 datasets
ChIP GM12878 ENCFF521LQJ 274 bp overlap
ChIP GM12878 ENCSR000BQK.ATF2.GM12878 142 bp overlap
ChIP H1 ENCFF295GZO 312 bp overlap
ChIP WA01 ENCSR000BQU.ATF2.WA01 312 bp overlap
ATF7 1 dataset
ChIP GM12878 ENCSR014YCR.ATF7.GM12878 136 bp overlap
BATF 1 dataset
ChIP GM12878 ENCFF954REE 112 bp overlap
BCL11A 2 datasets
ChIP GM12878 ENCFF717YPR 168 bp overlap
ChIP GM12878 ENCSR000BHA.BCL11A.GM12878 213 bp overlap
BCL3 1 dataset
ChIP GM12878 ENCSR000BNQ.BCL3.GM12878 109 bp overlap
BCL6 2 datasets
ChIP OCI-Ly1 GSE29282.BCL6.OCI-Ly1 288 bp overlap
ChIP SU-DHL-4 GSE119038.BCL6.SU-DHL-4 196 bp overlap
BCOR 3 datasets
ChIP B-cell_GERMINAL_CENTER GSE43350.BCOR.B-cell_GERMINAL_CENTER 113 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 253 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 312 bp overlap
BRD4 6 datasets
ChIP CLL_patient1 GSE109411.BRD4.CLL_patient1 312 bp overlap
ChIP CLL_patient1_4h_CpG_BET GSE109411.BRD4.CLL_patient1_4h_CpG_BET 233 bp overlap
ChIP CLL_patient2 GSE109411.BRD4.CLL_patient2 197 bp overlap
ChIP CLL_patient2_4h_CpG GSE109411.BRD4.CLL_patient2_4h_CpG 312 bp overlap
ChIP MM1-S_JQ1_5NM GSE42355.BRD4.MM1-S_JQ1_5NM 135 bp overlap
ChIP hESC GSE33281.BRD4.hESC 136 bp overlap
CBFB 2 datasets
ChIP GM12878 ENCFF056JUS 265 bp overlap
ChIP GM12878 ENCSR860UHK.CBFB.GM12878 262 bp overlap
CDK9 2 datasets
ChIP MM1-S_JQ1_500NM GSE42355.CDK9.MM1-S_JQ1_500NM 77 bp overlap
ChIP MM1-S_JQ1_500NM GSE42355.CDK9.MM1-S_JQ1_500NM 188 bp overlap
CHD7 2 datasets
ChIP H1 ENCFF126NLU 306 bp overlap
ChIP WA01 ENCSR000AVA.CHD7.WA01 162 bp overlap
CREB1 2 datasets
ChIP GM23338 ENCFF432ZEW 205 bp overlap
ChIP WA01 ENCSR000BSN.CREB1.WA01 172 bp overlap
CREBBP 1 dataset
ChIP tonsil_GCBc_p4 GSE89688.CREBBP.tonsil_GCBc_p4 240 bp overlap
CREM 2 datasets
ChIP GM12878 ENCFF391UGE 176 bp overlap
ChIP GM12878 ENCSR839XZU.CREM.GM12878 176 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 312 bp overlap
CTCF 1 dataset
ChIP fibroblast_CARDIAC ENCSR000DTF.CTCF.fibroblast_CARDIAC 113 bp overlap
DPF2 1 dataset
ChIP GM12878 ENCSR509FWH.DPF2.GM12878 312 bp overlap
ELF1 2 datasets
ChIP GM12878 ENCFF432UGA 312 bp overlap
ChIP GM12878 ENCSR000BMB.ELF1.GM12878 258 bp overlap
EP300 4 datasets
ChIP GM12878 ENCSR000BHB.EP300.GM12878 76 bp overlap
ChIP H1 ENCFF937OPV 205 bp overlap
ChIP WA01 ENCSR000BKK.EP300.WA01 137 bp overlap
ChIP WA01 ENCSR000AUQ.EP300.WA01 147 bp overlap
ERG 1 dataset
ChIP SKNO-1 GSE23730.ERG.SKNO-1 195 bp overlap
ETS1 4 datasets
ChIP GM12878 ENCSR000BKA.ETS1.GM12878 117 bp overlap
ChIP GM23338 ENCFF701IZH 312 bp overlap
ChIP HUVEC-C GSE41166.ETS1.HUVEC-C 213 bp overlap
ChIP hESC ENCSR534VHI.ETS1.hESC 224 bp overlap
ETV6 3 datasets
ChIP GM12878 ENCFF105ZMI 312 bp overlap
ChIP GM12878 ENCSR626VUC.ETV6.GM12878 217 bp overlap
ChIP WTC11 ENCFF812SCD 312 bp overlap
GABPA 1 dataset
ChIP GM12878 ENCFF872TWR 210 bp overlap
GATAD2B 2 datasets
ChIP GM12878 ENCFF781IAU 312 bp overlap
ChIP GM12878 ENCSR828NCB.GATAD2B.GM12878 312 bp overlap
GLIS1 1 dataset
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 193 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 312 bp overlap
Gli1 1 dataset
Motif ES_0h ES_0h-Gli1_MA1990.2 10 bp overlap
Gli2 1 dataset
Motif ES_0h ES_0h-Gli2_MA0734.4 9 bp overlap
HCFC1 1 dataset
ChIP GM12878 ENCSR514VAY.HCFC1.GM12878 183 bp overlap
HDAC2 1 dataset
ChIP WA01 ENCSR000AVB.HDAC2.WA01 312 bp overlap
HDGF 1 dataset
ChIP GM12878 ENCFF653WYI 312 bp overlap
HOXB13 1 dataset
ChIP prostate_P1_T GSE130408.HOXB13.prostate_P1_T 65 bp overlap
IKZF1 2 datasets
ChIP GM12878 ENCFF753XDO 56 bp overlap
ChIP GM12878 ENCFF824TGK 312 bp overlap
IKZF2 5 datasets
ChIP GM12878 ENCFF238LYK 312 bp overlap
ChIP GM12878 ENCFF238LYK 299 bp overlap
ChIP GM12878 ENCFF918AID 312 bp overlap
ChIP GM12878 ENCSR822AHX.IKZF2.GM12878 312 bp overlap
ChIP GM12878 ENCSR680UQE.IKZF2.GM12878 312 bp overlap
IRF4 1 dataset
ChIP GM12878 ENCSR000BGY.IRF4.GM12878 239 bp overlap
JUN 9 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 185 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 270 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 243 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 312 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 312 bp overlap
ChIP H1 ENCFF621PNP 90 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 312 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 290 bp overlap
ChIP MDA-BoM-1833 GSE112444.JUN.MDA-BoM-1833 220 bp overlap
JUNB 2 datasets
ChIP GM12878 ENCFF667EJQ 183 bp overlap
ChIP GM12878 ENCSR897MMC.JUNB.GM12878 96 bp overlap
JUND 3 datasets
ChIP H1 ENCFF010YXS 66 bp overlap
ChIP WA01 ENCSR000EBZ.JUND.WA01 71 bp overlap
ChIP WA01 ENCSR000BKP.JUND.WA01 60 bp overlap
KMT2A 1 dataset
ChIP RCH-ACV GSE83671.KMT2A.RCH-ACV 196 bp overlap
MAX 3 datasets
ChIP H1 ENCFF601FOM 251 bp overlap
ChIP WA01 ENCSR000EUP.MAX.WA01 147 bp overlap
ChIP WTC11 ENCFF223QFY 273 bp overlap
MED1 5 datasets
ChIP HUVEC-C_siCTL GSE124892.MED1.HUVEC-C_siCTL 199 bp overlap
ChIP HUVEC-C_siERG GSE124892.MED1.HUVEC-C_siERG 133 bp overlap
ChIP MM1-S_JQ1_5000NM GSE49224.MED1.MM1-S_JQ1_5000NM 234 bp overlap
ChIP MM1-S_JQ1_500NM GSE42355.MED1.MM1-S_JQ1_500NM 235 bp overlap
ChIP MM1-S_JQ1_5NM GSE49224.MED1.MM1-S_JQ1_5NM 271 bp overlap
MEF2A 1 dataset
ChIP GM12878 ENCSR000BKB.MEF2A.GM12878 169 bp overlap
MLLT1 1 dataset
ChIP GM12878 ENCSR552XSN.MLLT1.GM12878 312 bp overlap
MTA2 1 dataset
ChIP GM12878 ENCSR293QAR.MTA2.GM12878 312 bp overlap
MYC 2 datasets
ChIP MM1-S_DMSO GSE36354.MYC.MM1-S_DMSO 109 bp overlap
ChIP P493-6 GSE77061.MYC.P493-6 152 bp overlap
MYOD1 2 datasets
ChIP myoblast GSE50413.MYOD1.myoblast 51 bp overlap
ChIP rhabdomyosarcoma GSE50413.MYOD1.rhabdomyosarcoma 196 bp overlap
NANOG 7 datasets
ChIP GM23338 ENCFF065NZG 187 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 230 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 312 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 123 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 211 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 287 bp overlap
ChIP hESC GSE20650.NANOG.hESC 124 bp overlap
NBN 2 datasets
ChIP GM12878 ENCFF213ZNN 312 bp overlap
ChIP GM12878 ENCSR278SQL.NBN.GM12878 298 bp overlap
NCAPH2 1 dataset
ChIP RMG-I GSE120058.NCAPH2.RMG-I 238 bp overlap
NFIC 2 datasets
ChIP GM12878 ENCFF259FWL 312 bp overlap
ChIP GM12878 ENCSR000BRN.NFIC.GM12878 312 bp overlap
NKX3-1 1 dataset
ChIP islet ERP004003.NKX3-1.islet 155 bp overlap
NR2F6 1 dataset
Motif ES_0h ES_0h-NR2F6_MA1539.1 15 bp overlap
OSR2 1 dataset
ChIP HEK293 GSE76494.OSR2.HEK293 115 bp overlap
PAX5 2 datasets
ChIP GM12878 ENCFF503GOV 204 bp overlap
ChIP GM12878 ENCSR000BHJ.PAX5.GM12878 312 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 129 bp overlap
PKNOX1 2 datasets
ChIP GM12878 ENCFF589FCY 140 bp overlap
ChIP GM12878 ENCSR711XNY.PKNOX1.GM12878 157 bp overlap
POLR2A 3 datasets
ChIP GM23338 ENCFF450WCS 312 bp overlap
ChIP H1 ENCFF566JSR 261 bp overlap
ChIP spleen ENCFF446ZGT 218 bp overlap
POU2F2 3 datasets
ChIP GM12878 ENCFF207RKY 163 bp overlap
ChIP GM12891 ENCFF166YPP 224 bp overlap
ChIP GM12891 ENCSR000BII.POU2F2.GM12891 134 bp overlap
POU5F1 9 datasets
ChIP BG03 GSE21614.POU5F1.BG03 258 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 312 bp overlap
ChIP GM23338 ENCFF333SNB 299 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 312 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 312 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 261 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 299 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 298 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 213 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 312 bp overlap
PRPF4 1 dataset
ChIP Hep-G2 ENCSR243LNQ.PRPF4.Hep-G2 103 bp overlap
RB1 1 dataset
ChIP GM12878 ENCSR785OKZ.RB1.GM12878 95 bp overlap
RBBP5 2 datasets
ChIP H1 ENCFF905HFL 312 bp overlap
ChIP WA01 ENCSR000AQC.RBBP5.WA01 312 bp overlap
RBPJ 2 datasets
ChIP LCL GSE75503.RBPJ.LCL 240 bp overlap
ChIP NHEK GSE29498.RBPJ.NHEK 229 bp overlap
RELA 3 datasets
ChIP GM12878 ENCSR000EAG.RELA.GM12878 112 bp overlap
ChIP GM18951 ENCSR000EBD.RELA.GM18951 105 bp overlap
ChIP GM19099 ENCSR000EBI.RELA.GM19099 255 bp overlap
RELB 1 dataset
ChIP GM12878 ENCSR387QUV.RELB.GM12878 121 bp overlap
RUNX1T1 1 dataset
ChIP Kasumi-1 GSE102697.RUNX1T1.Kasumi-1 164 bp overlap
RUNX3 1 dataset
ChIP GM12878 ENCFF395WHA 247 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 305 bp overlap
SCRT1 2 datasets
ChIP HEK293 ENCFF513YVP 150 bp overlap
ChIP HEK293 ENCSR605MGM.SCRT1.HEK293 111 bp overlap
SCRT2 1 dataset
ChIP HEK293 ENCFF711QQB 159 bp overlap
SIN3A 2 datasets
ChIP H1 ENCFF042ZSL 312 bp overlap
ChIP H1 ENCFF042ZSL 185 bp overlap
SKIL 1 dataset
ChIP GM12878 ENCSR212YKD.SKIL.GM12878 59 bp overlap
SMAD2 3 datasets
ChIP hESC GSE29422.SMAD2.hESC 191 bp overlap
ChIP hESC_YAP-_activinA_15h GSE99202.SMAD2.hESC_YAP-_activinA_15h 312 bp overlap
ChIP hESC_activinA_15h GSE99202.SMAD2.hESC_activinA_15h 234 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8 GSE109524.SMAD2-3.HUES-8 312 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 263 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 143 bp overlap
SMAD2_3 2 datasets
ChIP ESC S23-ESC-d0-SMAD2_3-exp1 171 bp overlap
ChIP ESC S33-ESC-d0-SMAD2_3-exp2 312 bp overlap
SMAD3 4 datasets
ChIP BG03 GSE21614.SMAD3.BG03 261 bp overlap
ChIP BG03 GSE36578.SMAD3.BG03 84 bp overlap
ChIP BG03_DIFF_0H GSE36578.SMAD3.BG03_DIFF_0H 258 bp overlap
ChIP hESC GSE29422.SMAD3.hESC 309 bp overlap
SMARCA4 2 datasets
ChIP hiPSC GSE124903.SMARCA4.hiPSC 134 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 312 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 111 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 312 bp overlap
SMARCC1 3 datasets
ChIP ESC S25-ESC-d0-BAF155-exp1 198 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 181 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 312 bp overlap
SND1 1 dataset
ChIP NHEK GSE29498.SND1.NHEK 197 bp overlap
SOX2 2 datasets
ChIP HNSC GSE69479.SOX2.HNSC 249 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 234 bp overlap
SP1 3 datasets
ChIP GM12878 ENCSR000BHK.SP1.GM12878 124 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 184 bp overlap
ChIP WTC11 ENCFF688PEU 312 bp overlap
SP5 1 dataset
Motif ES_0h ES_0h-SP5_MA1965.2 6 bp overlap
SRF 1 dataset
ChIP GM12878 ENCSR000BMI.SRF.GM12878 114 bp overlap
STAT3 1 dataset
ChIP SU-DHL-2 GSE50723.STAT3.SU-DHL-2 215 bp overlap
TAF1 1 dataset
ChIP WA01 ENCSR000BHO.TAF1.WA01 250 bp overlap
TBP 5 datasets
ChIP WA01 ENCSR000ECB.TBP.WA01 267 bp overlap
ChIP hESC GSE122298.TBP.hESC 141 bp overlap
ChIP hESC_10h GSE122298.TBP.hESC_10h 229 bp overlap
ChIP hESC_2h GSE122298.TBP.hESC_2h 77 bp overlap
ChIP hiPSC_WTa_RNase-pos GSE128135.TBP.hiPSC_WTa_RNase-pos 189 bp overlap
TBX21 1 dataset
ChIP GM12878 ENCSR739IHN.TBX21.GM12878 312 bp overlap
TCF12 5 datasets
ChIP GM12878 ENCFF506WWB 202 bp overlap
ChIP GM12878 ENCSR000BGZ.TCF12.GM12878 312 bp overlap
ChIP GM12878 ENCSR725VFL.TCF12.GM12878 161 bp overlap
ChIP H1 ENCFF203EBH 251 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 312 bp overlap
TCF3 4 datasets
ChIP GM12878 ENCFF658WIO 274 bp overlap
ChIP GM12878 ENCSR000BQT.TCF3.GM12878 294 bp overlap
ChIP NPC GSE154479.TCF3.NPC 312 bp overlap
ChIP Ramos GSE139810.TCF3.Ramos 267 bp overlap
TFAP2C 2 datasets
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 287 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 312 bp overlap
TP53 1 dataset
ChIP hESC_DIFF GSE39912.TP53.hESC_DIFF 146 bp overlap
USF1 5 datasets
ChIP H1 ENCFF090WVU 118 bp overlap
ChIP Hep-G2 ENCSR000BGM.USF1.Hep-G2 103 bp overlap
ChIP WA01 ENCSR000BIU.USF1.WA01 228 bp overlap
ChIP WTC11 ENCFF699QGS 312 bp overlap
ChIP WTC11 ENCFF699QGS 117 bp overlap
USF2 4 datasets
ChIP GM12878 GSE97661.USF2.GM12878 220 bp overlap
ChIP H1 ENCFF434EDF 207 bp overlap
ChIP WA01 ENCSR000ECD.USF2.WA01 149 bp overlap
ChIP WTC11 ENCFF139JAW 190 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 158 bp overlap
ZEB1 3 datasets
ChIP GM12878 ENCFF148RLQ 274 bp overlap
ChIP GM12878 ENCSR000BND.ZEB1.GM12878 312 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR418KUS.ZEB1.neuron_bipolar_doxy_4d 112 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 201 bp overlap
ZNF114 2 datasets
ChIP GM23338 ENCFF631OSW 305 bp overlap
ChIP GM23338 ENCFF631OSW 159 bp overlap
ZNF219 1 dataset
ChIP WTC11 ENCFF998WKU 105 bp overlap
ZNF232 1 dataset
ChIP WTC11 ENCFF901BGD 312 bp overlap
ZNF341 3 datasets
Motif ES_0h ES_0h-ZNF341_MA1655.2 8 bp overlap
ChIP HEK293 ENCFF944VMC 312 bp overlap
ChIP HEK293 ENCSR185FOY.ZNF341.HEK293 215 bp overlap
ZNF423 1 dataset
ChIP WTC11 ENCFF574PBR 291 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 251 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 311 bp overlap
ZNF600 1 dataset
ChIP HEK293 ENCFF785JSX 300 bp overlap
ZNF667 1 dataset
Motif ES_0h ES_0h-ZNF667_MA1984.2 11 bp overlap
ZNF687 2 datasets
ChIP GM12878 ENCFF233SGE 312 bp overlap
ChIP GM12878 ENCSR859FDL.ZNF687.GM12878 241 bp overlap
Zfx 1 dataset
Motif ES_0h ES_0h-Zfx_MA0146.3 10 bp overlap