chr3 : 58,588,099 58,588,315
216 bp 123 TFs 1 linked gene
This 216 bp open chromatin element is linked to FAM107A and is bound by 123 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
FAM107A 986 bp At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:58,583,099 – 58,593,315
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
123 transcription factors
Source
Cell type
AFF1 2 datasets
ChIP K-562 ENCSR426URK.AFF1.K-562 216 bp overlap
ChIP SEM_DMSO GSE90762.AFF1.SEM_DMSO 166 bp overlap
AR 3 datasets
ChIP A-375 GSE116189.AR.A-375 130 bp overlap
ChIP A-375_SLNCR GSE116189.AR.A-375_SLNCR 216 bp overlap
ChIP prostate_cancer-associated-fibroblasts GSE90772.AR.prostate_cancer-associated-fibroblasts 94 bp overlap
ARID2 1 dataset
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.ARID2.BIN-67_lentivirus-SMARCA4-T910M 208 bp overlap
ARNTL 1 dataset
ChIP Hep-G2 ENCSR794LVK.ARNTL.Hep-G2 205 bp overlap
ATF1 1 dataset
ChIP WTC11 ENCFF354DFT 216 bp overlap
ATF3 3 datasets
ChIP Hep-G2 ENCSR402ZCY.ATF3.Hep-G2 151 bp overlap
ChIP K-562 ENCSR028UIU.ATF3.K-562 90 bp overlap
ChIP K562 ENCFF604FPV 216 bp overlap
ATF4 1 dataset
ChIP Jurkat_ZBTB1-KO_Asp-deprivation GSE145783.ATF4.Jurkat_ZBTB1-KO_Asp-deprivation 156 bp overlap
BCL11A 1 dataset
ChIP CD34_Day3_30min GSE104676.BCL11A.CD34_Day3_30min 76 bp overlap
BRD2 1 dataset
ChIP SK-MEL-147 GSE94488.BRD2.SK-MEL-147 209 bp overlap
BRD7 1 dataset
ChIP SUM159PT_JQ1 GSE131097.BRD7.SUM159PT_JQ1 175 bp overlap
CEBPA 2 datasets
ChIP MV4-11 GSE88746.CEBPA.MV4-11 140 bp overlap
ChIP T-47D_siCtrl GSE132649.CEBPA.T-47D_siCtrl 84 bp overlap
CEBPB 5 datasets
ChIP H1 ENCFF871PTR 149 bp overlap
ChIP Ishikawa ENCSR000BTT.CEBPB.Ishikawa 120 bp overlap
ChIP K-562 ENCSR000BRQ.CEBPB.K-562 118 bp overlap
ChIP K562 ENCFF584CTB 216 bp overlap
ChIP WA01 ENCSR000EBV.CEBPB.WA01 206 bp overlap
CTBP1 1 dataset
ChIP K-562 ENCSR201NQZ.CTBP1.K-562 158 bp overlap
CTCF 1 dataset
ChIP erythroid GSE67783.CTCF.erythroid 57 bp overlap
Cebpa 9 datasets
ChIP BLaER1 ENCFF093OYK 159 bp overlap
ChIP BLaER1 ENCFF262VBH 161 bp overlap
ChIP BLaER1 ENCFF274GAT 155 bp overlap
ChIP BLaER1 ENCFF335XTP 216 bp overlap
ChIP BLaER1 ENCFF364PUR 216 bp overlap
ChIP BLaER1 ENCFF399AYC 71 bp overlap
ChIP BLaER1 ENCFF460KDD 53 bp overlap
ChIP BLaER1 ENCFF844FIP 87 bp overlap
ChIP BLaER1 ENCFF858JKM 97 bp overlap
DEK 1 dataset
ChIP HeLa-S3 ENCSR219MKK.DEK.HeLa-S3 157 bp overlap
DLX6 1 dataset
ChIP Hep-G2 ENCSR272TOJ.DLX6.Hep-G2 130 bp overlap
DMAP1 1 dataset
ChIP Hep-G2 ENCSR670YPQ.DMAP1.Hep-G2 152 bp overlap
DRAP1 1 dataset
ChIP Hep-G2 ENCSR765MKZ.DRAP1.Hep-G2 132 bp overlap
E2F6 2 datasets
ChIP H1 ENCFF785DWK 216 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 193 bp overlap
EED 1 dataset
ChIP ProEs GSE59087.EED.ProEs 71 bp overlap
EGR1 1 dataset
ChIP Hep-G2 ENCSR026GSW.EGR1.Hep-G2 216 bp overlap
EHMT2 6 datasets
ChIP A-549 ENCSR321BJQ.EHMT2.A-549 216 bp overlap
ChIP A549 ENCFF026GWM 216 bp overlap
ChIP HepG2 ENCFF004KYI 216 bp overlap
ChIP HepG2 ENCFF004KYI 156 bp overlap
ChIP K-562 ENCSR175EOM.EHMT2.K-562 216 bp overlap
ChIP K562 ENCFF053BWO 216 bp overlap
ELF1 1 dataset
ChIP Hep-G2 ENCSR321VGW.ELF1.Hep-G2 136 bp overlap
ESR1 3 datasets
ChIP Ishikawa_DMSO_D538G_clone3 GSE132426.ESR1.Ishikawa_DMSO_D538G_clone3 216 bp overlap
ChIP Ishikawa_E2_D538G_clone2 GSE132426.ESR1.Ishikawa_E2_D538G_clone2 89 bp overlap
ChIP T-47D_Y537S GSE148277.ESR1.T-47D_Y537S 216 bp overlap
EZH2 5 datasets
ChIP RH30_DMSO GSE85169.EZH2.RH30_DMSO 216 bp overlap
ChIP astrocyte ENCSR000ARR.EZH2.astrocyte 181 bp overlap
ChIP endothelial_umbilical-vein ENCSR000ATA.EZH2.endothelial_umbilical-vein 185 bp overlap
ChIP fibroblast_LUNG ENCSR000ARO.EZH2.fibroblast_LUNG 124 bp overlap
ChIP neural_progenitor ENCSR069DPL.EZH2.neural_progenitor 149 bp overlap
FOXK1 2 datasets
ChIP Hep-G2 ENCSR603BJQ.FOXK1.Hep-G2 152 bp overlap
ChIP WTC11 ENCFF875IGU 216 bp overlap
FOXO4 1 dataset
ChIP HepG2 ENCFF909ISL 216 bp overlap
FOXP1 2 datasets
ChIP H9 GSE31006.FOXP1.H9 153 bp overlap
ChIP WTC11 ENCFF338WGC 216 bp overlap
FOXP4 2 datasets
ChIP WTC11 ENCFF708TAF 216 bp overlap
ChIP WTC11 ENCFF708TAF 62 bp overlap
HDAC2 6 datasets
ChIP H1 ENCFF353UJQ 216 bp overlap
ChIP H1 ENCFF353UJQ 216 bp overlap
ChIP K-562 ENCSR000AQG.HDAC2.K-562 135 bp overlap
ChIP RH4_DMSO-6H GSE116344.HDAC2.RH4_DMSO-6H 193 bp overlap
ChIP RH4_Entinostat-6H GSE116344.HDAC2.RH4_Entinostat-6H 216 bp overlap
ChIP WA01 ENCSR000AVB.HDAC2.WA01 211 bp overlap
HLF 1 dataset
ChIP HepG2 ENCFF854JLR 209 bp overlap
HOXA3 1 dataset
ChIP Hep-G2 ENCSR999JKC.HOXA3.Hep-G2 140 bp overlap
ID3 1 dataset
ChIP K-562 ENCSR005NMT.ID3.K-562 216 bp overlap
ISL2 1 dataset
ChIP Hep-G2 ENCSR492IHH.ISL2.Hep-G2 145 bp overlap
JMJD1C 1 dataset
ChIP Kasumi-1 GSE63484.JMJD1C.Kasumi-1 199 bp overlap
KLF6 1 dataset
ChIP Hep-G2 ENCSR757EKM.KLF6.Hep-G2 192 bp overlap
MAX 1 dataset
ChIP H1 ENCFF914VQY 168 bp overlap
MBD1 1 dataset
ChIP HepG2 ENCFF588NNG 216 bp overlap
MED1 1 dataset
ChIP Hep-G2 ENCSR959XNY.MED1.Hep-G2 141 bp overlap
MIER1 3 datasets
ChIP K-562 ENCSR426MDV.MIER1.K-562 216 bp overlap
ChIP K562 ENCFF584AYC 216 bp overlap
ChIP K562 ENCFF584AYC 177 bp overlap
MIER2 1 dataset
ChIP HepG2 ENCFF997QIX 216 bp overlap
MLX 1 dataset
ChIP Hep-G2 ENCSR125DAD.MLX.Hep-G2 126 bp overlap
MNX1 1 dataset
ChIP Hep-G2 ENCSR108MKR.MNX1.Hep-G2 160 bp overlap
MTA2 1 dataset
ChIP RH4 GSE155861.MTA2.RH4 143 bp overlap
MXD4 1 dataset
ChIP Hep-G2 ENCSR441KFW.MXD4.Hep-G2 146 bp overlap
MYBL2 1 dataset
ChIP Hep-G2 ENCSR581KCO.MYBL2.Hep-G2 178 bp overlap
MYNN 1 dataset
ChIP Hep-G2 ENCSR398TMP.MYNN.Hep-G2 183 bp overlap
NANOG 1 dataset
ChIP HUES-8 GSE109524.NANOG.HUES-8 211 bp overlap
NFAT5 1 dataset
ChIP Hep-G2 ENCSR565BVI.NFAT5.Hep-G2 153 bp overlap
OTX2 1 dataset
ChIP WTC11 ENCFF634NAO 140 bp overlap
PDX1 1 dataset
ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 145 bp overlap
PGR_A 1 dataset
ChIP hESC GSE62475.PGR_A.hESC 216 bp overlap
POU5F1 1 dataset
ChIP hiPSC GSE56567.POU5F1.hiPSC 143 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 183 bp overlap
PPARG 1 dataset
ChIP Hep-G2 ENCSR130VQL.PPARG.Hep-G2 169 bp overlap
RAD21 1 dataset
ChIP RH4 GSE83726.RAD21.RH4 129 bp overlap
REST 70 datasets
ChIP A-549 ENCSR892DRK.REST.A-549 216 bp overlap
ChIP A-549 ENCSR000BQP.REST.A-549 216 bp overlap
ChIP A549 ENCFF148AIS 216 bp overlap
ChIP CD4 GSE49570.REST.CD4 216 bp overlap
ChIP GM12878 ENCFF235NGC 216 bp overlap
ChIP GM12878 ENCFF943QPB 216 bp overlap
ChIP GM12878 ENCSR000BGF.REST.GM12878 216 bp overlap
ChIP GM12878 ENCSR000BQS.REST.GM12878 216 bp overlap
ChIP GM23338 ENCFF024TCL 216 bp overlap
ChIP GM23338 ENCSR871KYB.REST.GM23338 216 bp overlap
ChIP GP5D GSE51234.REST.GP5D 216 bp overlap
ChIP GP5D_SIRAD21 GSE51234.REST.GP5D_SIRAD21 216 bp overlap
ChIP H1 ENCFF203SWY 216 bp overlap
ChIP H1 ENCFF429RUE 216 bp overlap
ChIP HCT-116 ENCSR000BVI.REST.HCT-116 216 bp overlap
ChIP HCT116 ENCFF929AYY 216 bp overlap
ChIP HEK293 ENCFF073DOT 216 bp overlap
ChIP HEK293 ENCSR896UBV.REST.HEK293 216 bp overlap
ChIP HL-60 ENCFF589LOF 216 bp overlap
ChIP HL-60 ENCSR000BTF.REST.HL-60 216 bp overlap
ChIP HeLa-S3 ENCFF911DTC 216 bp overlap
ChIP HeLa-S3 ENCSR000BMN.REST.HeLa-S3 216 bp overlap
ChIP Hep-G2 ENCSR000BOT.REST.Hep-G2 216 bp overlap
ChIP Hep-G2 ENCSR000BJL.REST.Hep-G2 216 bp overlap
ChIP HepG2 ENCFF122AWR 216 bp overlap
ChIP HepG2 ENCFF800JSL 216 bp overlap
ChIP Ishikawa ENCFF456OHV 216 bp overlap
ChIP Ishikawa ENCSR000BUU.REST.Ishikawa 216 bp overlap
ChIP K-562 ENCSR000BMW.REST.K-562 216 bp overlap
ChIP K-562 ENCSR137ZMQ.REST.K-562 216 bp overlap
ChIP K-562 GSE70482.REST.K-562 216 bp overlap
ChIP K562 ENCFF430APM 216 bp overlap
ChIP K562 ENCFF685YZN 216 bp overlap
ChIP K562 ENCFF688UKW 216 bp overlap
ChIP K562 ENCFF758CZL 216 bp overlap
ChIP MCF-7 ENCFF893RRD 216 bp overlap
ChIP MCF-7 ENCSR000BSP.REST.MCF-7 216 bp overlap
ChIP NCI-H295R GSE49014.REST.NCI-H295R 216 bp overlap
ChIP NCI-H295R_SF1 GSE49014.REST.NCI-H295R_SF1 216 bp overlap
ChIP PANC-1 ENCSR000BUP.REST.PANC-1 216 bp overlap
ChIP PANC-1 ENCSR000BPK.REST.PANC-1 216 bp overlap
ChIP PANC-1 ENCSR000BJO.REST.PANC-1 216 bp overlap
ChIP PFSK-1 ENCFF668WMP 216 bp overlap
ChIP PFSK-1 ENCFF845VHA 216 bp overlap
ChIP PFSK1 ENCSR000BOX.REST.PFSK1 216 bp overlap
ChIP PFSK1 ENCSR000BJP.REST.PFSK1 216 bp overlap
ChIP Panc1 ENCFF338WSQ 216 bp overlap
ChIP Panc1 ENCFF518EEQ 216 bp overlap
ChIP Panc1 ENCFF629OJO 216 bp overlap
ChIP SK-N-SH ENCFF635KBN 216 bp overlap
ChIP SK-N-SH ENCFF861MKH 146 bp overlap
ChIP SK-N-SH ENCSR000BJJ.REST.SK-N-SH 216 bp overlap
ChIP WA01 ENCSR663WAR.REST.WA01 216 bp overlap
ChIP WA01 ENCSR000BHM.REST.WA01 216 bp overlap
ChIP colorectal-cancer_CRC121_dissociated GSE112555.REST.colorectal-cancer_CRC121_dissociated 216 bp overlap
ChIP colorectal-cancer_CRC121_intact GSE112555.REST.colorectal-cancer_CRC121_intact 216 bp overlap
ChIP colorectal-cancer_shCTRL_dissociated GSE112555.REST.colorectal-cancer_shCTRL_dissociated 216 bp overlap
ChIP hepatocyte ERP000395.REST.hepatocyte 185 bp overlap
ChIP hiPSC_IA12 GSE106870.REST.hiPSC_IA12 216 bp overlap
ChIP hiPSC_IB12 GSE106870.REST.hiPSC_IB12 216 bp overlap
ChIP hiPSC_IIA11 GSE106870.REST.hiPSC_IIA11 216 bp overlap
ChIP hiPSC_IID12 GSE106870.REST.hiPSC_IID12 216 bp overlap
ChIP liver ENCFF240FWT 216 bp overlap
ChIP liver ENCFF577AZT 216 bp overlap
ChIP liver ENCSR893QWP.REST.liver 216 bp overlap
ChIP liver ENCSR867WPH.REST.liver 216 bp overlap
ChIP metastatic-neuroblastoma_CHLA90 GSE100148.REST.metastatic-neuroblastoma_CHLA90 216 bp overlap
ChIP metastatic-neuroblastoma_SKNMM GSE100148.REST.metastatic-neuroblastoma_SKNMM 180 bp overlap
ChIP neural ENCSR000BTV.REST.neural 178 bp overlap
ChIP neural cell ENCFF882LXX 216 bp overlap
RFX3 1 dataset
ChIP Hep-G2 ENCSR633OVO.RFX3.Hep-G2 143 bp overlap
RNF2 1 dataset
ChIP fibroblast GSE139053.RNF2.fibroblast 204 bp overlap
RXRB 1 dataset
ChIP HepG2 ENCFF539ZAY 216 bp overlap
SALL1 1 dataset
ChIP HepG2 ENCFF426MCK 216 bp overlap
SAP30 1 dataset
ChIP WA01 ENCSR000ATR.SAP30.WA01 211 bp overlap
SIN3A 4 datasets
ChIP H1 ENCFF042ZSL 216 bp overlap
ChIP H1 ENCFF896IJG 216 bp overlap
ChIP WA01 ENCSR000BIS.SIN3A.WA01 148 bp overlap
ChIP WA01 ENCSR000EBO.SIN3A.WA01 171 bp overlap
SIX1 1 dataset
ChIP Hep-G2 ENCSR561BQM.SIX1.Hep-G2 141 bp overlap
SIX4 2 datasets
ChIP HepG2 ENCFF372NPG 216 bp overlap
ChIP WTC11 ENCFF891HYW 216 bp overlap
SMAD3 2 datasets
ChIP Hep-G2 ENCSR005GZH.SMAD3.Hep-G2 216 bp overlap
ChIP WTC11 ENCFF815YYQ 216 bp overlap
SMARCA4 6 datasets
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-T910M 216 bp overlap
ChIP TTC-1240_R377H GSE124903.SMARCA4.TTC-1240_R377H 216 bp overlap
ChIP TTC-1240_SMARCB1-FL GSE124903.SMARCA4.TTC-1240_SMARCB1-FL 213 bp overlap
ChIP TTC-1240_empty GSE124903.SMARCA4.TTC-1240_empty 185 bp overlap
ChIP endometrial-epithelial-cells_KO GSE106660.SMARCA4.endometrial-epithelial-cells_KO 216 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 212 bp overlap
SMARCB1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 209 bp overlap
SMARCC1 5 datasets
ChIP ESC S25-ESC-d0-BAF155-exp1 185 bp overlap
ChIP HS-SY-2 GSE108025.SMARCC1.HS-SY-2 216 bp overlap
ChIP MCF-7 GSE124225.SMARCC1.MCF-7 176 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 216 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 215 bp overlap
SNAI2 2 datasets
ChIP keratinocyte_LacZ GSE55421.SNAI2.keratinocyte_LacZ 123 bp overlap
ChIP keratinocyte_SNAI2 GSE55421.SNAI2.keratinocyte_SNAI2 95 bp overlap
SOX2 1 dataset
ChIP hESC GSE18292.SOX2.hESC 95 bp overlap
SUZ12 1 dataset
ChIP CRL-7250_shSS18-SSX GSE108025.SUZ12.CRL-7250_shSS18-SSX 216 bp overlap
TCF3 1 dataset
ChIP Kasumi-1 GSE43834.TCF3.Kasumi-1 128 bp overlap
TEAD1 2 datasets
ChIP WTC11 ENCFF502QUV 216 bp overlap
ChIP pancreas_12D ERP008682.TEAD1.pancreas_12D 165 bp overlap
TEAD4 13 datasets
ChIP A-549 ENCSR000BUD.TEAD4.A-549 216 bp overlap
ChIP A549 ENCFF243FTL 170 bp overlap
ChIP H1 ENCFF778PAX 216 bp overlap
ChIP Ishikawa ENCSR000BSW.TEAD4.Ishikawa 138 bp overlap
ChIP MCF-7_BLRP_WT_Veh GSE125594.TEAD4.MCF-7_BLRP_WT_Veh 216 bp overlap
ChIP MCF-7_E2 GSE125594.TEAD4.MCF-7_E2 216 bp overlap
ChIP PC-9_1DF GSE131687.TEAD4.PC-9_1DF 216 bp overlap
ChIP PC-9_2DF GSE131687.TEAD4.PC-9_2DF 168 bp overlap
ChIP SK-MEL-147 GSE94488.TEAD4.SK-MEL-147 187 bp overlap
ChIP T-47D_E2 GSE125594.TEAD4.T-47D_E2 216 bp overlap
ChIP T-47D_Veh GSE125594.TEAD4.T-47D_Veh 216 bp overlap
ChIP WTC11 ENCFF114TZS 216 bp overlap
ChIP hMSC-TERT4 GSE140782.TEAD4.hMSC-TERT4 216 bp overlap
TFE3 2 datasets
ChIP Hep-G2 ENCSR589SNT.TFE3.Hep-G2 193 bp overlap
ChIP HepG2 ENCFF268PFH 216 bp overlap
TP53 1 dataset
ChIP hESC_DAMAGED GSE39912.TP53.hESC_DAMAGED 133 bp overlap
TP63 1 dataset
ChIP foreskin GSE126390.TP63.foreskin 183 bp overlap
TRIM24 1 dataset
ChIP LNCaP_DHT GSE69331.TRIM24.LNCaP_DHT 216 bp overlap
XRCC5 2 datasets
ChIP K-562 GSE120104.XRCC5.K-562 151 bp overlap
ChIP K-562 ENCSR506KWJ.XRCC5.K-562 146 bp overlap
ZBED4 1 dataset
ChIP Hep-G2 ENCSR409PMR.ZBED4.Hep-G2 145 bp overlap
ZBTB24 1 dataset
ChIP HCT-116 GSE111683.ZBTB24.HCT-116 211 bp overlap
ZBTB25 1 dataset
ChIP HepG2 ENCFF648SDH 216 bp overlap
ZBTB43 2 datasets
ChIP HepG2 ENCFF487RQI 216 bp overlap
ChIP WTC11 ENCFF058JUB 216 bp overlap
ZFP3 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR581GUY.ZFP3.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 216 bp overlap
ZFP37 1 dataset
ChIP Hep-G2 ENCSR505LJT.ZFP37.Hep-G2 150 bp overlap
ZFP64 1 dataset
ChIP Hep-G2 ENCSR487CPI.ZFP64.Hep-G2 201 bp overlap
ZKSCAN8 1 dataset
ChIP WTC11 ENCFF666HNJ 216 bp overlap
ZNF12 2 datasets
ChIP Hep-G2 ENCSR711KBM.ZNF12.Hep-G2 143 bp overlap
ChIP HepG2 ENCFF347LSW 216 bp overlap
ZNF121 1 dataset
ChIP WTC11 ENCFF291API 216 bp overlap
ZNF143 3 datasets
ChIP GM12878 ENCSR936XTK.ZNF143.GM12878 216 bp overlap
ChIP Hep-G2 ENCSR101FJT.ZNF143.Hep-G2 182 bp overlap
ChIP WA01 ENCSR000EBW.ZNF143.WA01 216 bp overlap
ZNF184 1 dataset
ChIP WTC11 ENCFF352POG 216 bp overlap
ZNF511 1 dataset
ChIP K562 ENCFF962ZYT 216 bp overlap
ZNF697 2 datasets
ChIP Hep-G2 ENCSR734WFB.ZNF697.Hep-G2 199 bp overlap
ChIP HepG2 ENCFF153LJW 216 bp overlap
ZNF770 1 dataset
ChIP HEK293 GSE76494.ZNF770.HEK293 148 bp overlap
ZSCAN9 1 dataset
ChIP HepG2 ENCFF196RWJ 216 bp overlap