chr1 : 54,411,735 54,412,248
513 bp 104 TFs 4 linked genes
This 513 bp open chromatin element is linked to 4 target genes and is bound by 104 transcription factors.
Linked Genes
4 genes
Distance
Link type
Gene Expression Dist. to TSS Distance Link type
SSBP3 5.3 kb Proximal Proximity
ACOT11 130.3 kb Distal Multiome
MRPL37 211.7 kb Distal Multiome
CYB5RL 211.9 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:54,406,735 – 54,417,248
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
104 transcription factors
Source
Cell type
ARID1B 2 datasets
ChIP K-562 ENCSR822CCM.ARID1B.K-562 290 bp overlap
ChIP K562 ENCFF938UXQ 513 bp overlap
ARNT 1 dataset
ChIP K-562 ENCSR613NUC.ARNT.K-562 252 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 308 bp overlap
ATF1 2 datasets
ChIP K562 ENCFF817JQF 507 bp overlap
ChIP K562 ENCFF817JQF 497 bp overlap
ATF2 2 datasets
ChIP K-562 ENCSR869IUD.ATF2.K-562 251 bp overlap
ChIP K562 ENCFF139ZZG 160 bp overlap
ATF3 1 dataset
ChIP K562 ENCFF604FPV 143 bp overlap
ATF7 1 dataset
ChIP K562 ENCFF308SKS 333 bp overlap
BCOR 3 datasets
ChIP K-562 ENCSR808AKZ.BCOR.K-562 343 bp overlap
ChIP K562 ENCFF343XWA 413 bp overlap
ChIP K562 ENCFF343XWA 335 bp overlap
BRD2 2 datasets
ChIP K-562_DMSO GSE138084.BRD2.K-562_DMSO 341 bp overlap
ChIP K-562_DMSO-IFNG GSE138084.BRD2.K-562_DMSO-IFNG 313 bp overlap
BRD3 4 datasets
ChIP K-562_DMSO GSE138084.BRD3.K-562_DMSO 359 bp overlap
ChIP K-562_DMSO-IFNG GSE138084.BRD3.K-562_DMSO-IFNG 346 bp overlap
ChIP K-562_iBET-BD2-IFNG GSE138084.BRD3.K-562_iBET-BD2-IFNG 233 bp overlap
ChIP K-562_iBET-IFNG GSE138084.BRD3.K-562_iBET-IFNG 218 bp overlap
BRD4 5 datasets
ChIP K-562_DMSO GSE138084.BRD4.K-562_DMSO 365 bp overlap
ChIP K-562_DMSO-IFNG GSE138084.BRD4.K-562_DMSO-IFNG 367 bp overlap
ChIP K-562_iBET-BD2 GSE138084.BRD4.K-562_iBET-BD2 398 bp overlap
ChIP K-562_iBET-BD2-IFNG GSE138084.BRD4.K-562_iBET-BD2-IFNG 299 bp overlap
ChIP K-562_iBET-IFNG GSE138084.BRD4.K-562_iBET-IFNG 217 bp overlap
BRD9 1 dataset
ChIP K-562 ENCSR177XCS.BRD9.K-562 219 bp overlap
CC2D1A 2 datasets
ChIP K562 ENCFF567XUT 445 bp overlap
ChIP K562 ENCFF567XUT 296 bp overlap
CREB1 1 dataset
ChIP K562 ENCFF786DGQ 366 bp overlap
CREM 2 datasets
ChIP K-562 ENCSR077DKV.CREM.K-562 93 bp overlap
ChIP K562 ENCFF180STA 278 bp overlap
CTBP1 1 dataset
ChIP K-562 ENCSR201NQZ.CTBP1.K-562 284 bp overlap
CXXC5 1 dataset
ChIP K562 ENCFF497CZN 356 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF364PUR 251 bp overlap
DPF2 2 datasets
ChIP K-562 ENCSR219BXP.DPF2.K-562 296 bp overlap
ChIP K562 ENCFF775HUO 513 bp overlap
E2F1 2 datasets
ChIP K-562 ENCSR720HUL.E2F1.K-562 316 bp overlap
ChIP K562 ENCFF191BFW 463 bp overlap
E4F1 2 datasets
ChIP K-562 ENCSR731LHZ.E4F1.K-562 427 bp overlap
ChIP K562 ENCFF622HMZ 254 bp overlap
EGR1 5 datasets
ChIP Hep-G2 ENCSR026GSW.EGR1.Hep-G2 240 bp overlap
ChIP K-562 ENCSR000BNE.EGR1.K-562 105 bp overlap
ChIP K562 ENCFF006PJY 245 bp overlap
ChIP K562 ENCFF113OPQ 427 bp overlap
ChIP K562 ENCFF895KGN 385 bp overlap
EP300 1 dataset
ChIP K-562 ENCSR000EGE.EP300.K-562 169 bp overlap
EP400 1 dataset
ChIP K562 ENCFF850OZQ 513 bp overlap
FOXK2 1 dataset
ChIP K562 ENCFF851PFH 325 bp overlap
GABPB1 3 datasets
ChIP K-562 ENCSR138YYY.GABPB1.K-562 236 bp overlap
ChIP K562 ENCFF015GDS 478 bp overlap
ChIP K562 ENCFF885NMS 513 bp overlap
GFI1B 1 dataset
ChIP K-562 ENCSR509GDT.GFI1B.K-562 122 bp overlap
HCFC1 1 dataset
ChIP K-562 ENCSR000EFN.HCFC1.K-562 135 bp overlap
HDAC1 2 datasets
ChIP K-562 ENCSR711VWL.HDAC1.K-562 256 bp overlap
ChIP K562 ENCFF928TKZ 394 bp overlap
HDAC2 4 datasets
ChIP K-562 ENCSR075HTM.HDAC2.K-562 307 bp overlap
ChIP K-562 ENCSR893WSB.HDAC2.K-562 253 bp overlap
ChIP K562 ENCFF744ALD 421 bp overlap
ChIP K562 ENCFF919OMP 498 bp overlap
HDGF 2 datasets
ChIP K-562 ENCSR197ALX.HDGF.K-562 329 bp overlap
ChIP K-562 ENCSR563YDA.HDGF.K-562 249 bp overlap
INTS11 1 dataset
ChIP HeLa GSE125534.INTS11.HeLa 136 bp overlap
JUN 6 datasets
ChIP DE_D2 S02-DE-d2-JUN-exp1 289 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 429 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 323 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 383 bp overlap
ChIP K-562 ENCSR000EFS.JUN.K-562 123 bp overlap
ChIP MDA-MB-231 GSE112444.JUN.MDA-MB-231 324 bp overlap
JUND 2 datasets
ChIP K-562 ENCSR000EGN.JUND.K-562 317 bp overlap
ChIP K562 ENCFF830LVJ 281 bp overlap
KDM1A 1 dataset
ChIP K-562_Wnt GSE117944.KDM1A.K-562_Wnt 217 bp overlap
KLF5 1 dataset
ChIP HEK293_E419Q GSE88976.KLF5.HEK293_E419Q 276 bp overlap
LARP7 1 dataset
ChIP K562 ENCFF550RPP 227 bp overlap
LEF1 2 datasets
ChIP K-562 ENCSR343ELW.LEF1.K-562 218 bp overlap
ChIP K562 ENCFF198WCP 457 bp overlap
MAX 5 datasets
ChIP Ishikawa ENCSR000BTY.MAX.Ishikawa 245 bp overlap
ChIP K-562 ENCSR000EFV.MAX.K-562 154 bp overlap
ChIP K562 ENCFF524IJO 397 bp overlap
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 164 bp overlap
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 201 bp overlap
MAZ 3 datasets
ChIP K-562 ENCSR000EFX.MAZ.K-562 195 bp overlap
ChIP K562 ENCFF333ZIV 371 bp overlap
ChIP K562 ENCFF809XHP 510 bp overlap
MED1 2 datasets
ChIP HUVEC-C_siCTL GSE124892.MED1.HUVEC-C_siCTL 233 bp overlap
ChIP HUVEC-C_siERG GSE124892.MED1.HUVEC-C_siERG 204 bp overlap
MLLT1 1 dataset
ChIP K-562 ENCSR107GRP.MLLT1.K-562 273 bp overlap
MTA2 1 dataset
ChIP K562 ENCFF441KCP 395 bp overlap
MTA3 2 datasets
ChIP K-562 ENCSR914NEI.MTA3.K-562 222 bp overlap
ChIP K562 ENCFF289UFB 472 bp overlap
MYC 1 dataset
ChIP K-562 ENCSR000EGJ.MYC.K-562 171 bp overlap
NCOA1 1 dataset
ChIP K562 ENCFF962VHQ 431 bp overlap
NELFA 1 dataset
ChIP K-562_HS GSE112379.NELFA.K-562_HS 236 bp overlap
NELFE 4 datasets
ChIP HeLa GSE125534.NELFE.HeLa 221 bp overlap
ChIP HeLa_DOX GSE125534.NELFE.HeLa_DOX 172 bp overlap
ChIP K-562_HS GSE112379.NELFE.K-562_HS 234 bp overlap
ChIP K-562_NHS GSE112379.NELFE.K-562_NHS 193 bp overlap
NFRKB 1 dataset
ChIP K562 ENCFF057YFW 499 bp overlap
NRF1 1 dataset
ChIP K562 ENCFF689EWI 447 bp overlap
PATZ1 1 dataset
ChIP HEK293 ENCFF016MNJ 470 bp overlap
PHF8 1 dataset
ChIP K-562 ENCSR000AQH.PHF8.K-562 172 bp overlap
PKNOX1 3 datasets
ChIP HEK293T ENCFF174WDB 246 bp overlap
ChIP K-562 ENCSR115SMW.PKNOX1.K-562 311 bp overlap
ChIP K562 ENCFF236IUS 224 bp overlap
POLR2A 5 datasets
ChIP K562 ENCFF137JSF 480 bp overlap
ChIP K562 ENCFF215CWW 218 bp overlap
ChIP K562 ENCFF757TUO 437 bp overlap
ChIP K562 ENCFF836GHX 170 bp overlap
ChIP PFSK-1 ENCFF576NIT 460 bp overlap
POLR2B 1 dataset
ChIP K562 ENCFF513ENO 445 bp overlap
RB1 1 dataset
ChIP K562 ENCFF627ZBG 341 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 175 bp overlap
RBFOX2 2 datasets
ChIP K-562 GSE120104.RBFOX2.K-562 225 bp overlap
ChIP K562 ENCFF196WTG 513 bp overlap
RLF 1 dataset
ChIP K562 ENCFF998IPA 286 bp overlap
RNF2 1 dataset
ChIP K562 ENCFF653BQJ 513 bp overlap
RUNX1T1 1 dataset
ChIP Kasumi-1 GSE115115.RUNX1T1.Kasumi-1 266 bp overlap
SIX2 1 dataset
ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 179 bp overlap
SIX4 1 dataset
ChIP WTC11 ENCFF891HYW 377 bp overlap
SKIL 2 datasets
ChIP K562 ENCFF560QSF 462 bp overlap
ChIP K562 ENCFF560QSF 436 bp overlap
SMAD4 1 dataset
ChIP K562 ENCFF628RBP 501 bp overlap
SMARCA4 3 datasets
ChIP K-562 ENCSR587OQL.SMARCA4.K-562 266 bp overlap
ChIP K562 ENCFF506JCB 475 bp overlap
ChIP K562 ENCFF506JCB 275 bp overlap
SMARCE1 2 datasets
ChIP K-562 ENCSR157TCS.SMARCE1.K-562 326 bp overlap
ChIP K562 ENCFF690CFF 493 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 128 bp overlap
SOX6 1 dataset
ChIP K562 ENCFF059YCJ 388 bp overlap
SP1 2 datasets
ChIP WTC11 ENCFF688PEU 375 bp overlap
ChIP WTC11 ENCFF688PEU 386 bp overlap
SPI1 5 datasets
ChIP K-562 ENCSR000BGW.SPI1.K-562 172 bp overlap
ChIP K-562 GSE70482.SPI1.K-562 176 bp overlap
ChIP K-562_NABUT GSE74999.SPI1.K-562_NABUT 109 bp overlap
ChIP K562 ENCFF410ORC 205 bp overlap
ChIP primary-monocyte_18h_donorO GSE128834.SPI1.primary-monocyte_18h_donorO 168 bp overlap
SREBP2 2 datasets
ChIP monocyte GSE129202.SREBP2.monocyte 428 bp overlap
ChIP monocyte_TNF GSE129202.SREBP2.monocyte_TNF 456 bp overlap
SUPT5H 3 datasets
ChIP HeLa GSE125534.SUPT5H.HeLa 204 bp overlap
ChIP HeLa_DOX GSE125534.SUPT5H.HeLa_DOX 201 bp overlap
ChIP K562 ENCFF902PAW 232 bp overlap
TAF1 1 dataset
ChIP PFSK1 ENCSR000BQN.TAF1.PFSK1 117 bp overlap
TAF7 1 dataset
ChIP K562 ENCFF314WLE 331 bp overlap
TBP 3 datasets
ChIP K-562 ENCSR000EHA.TBP.K-562 196 bp overlap
ChIP K562 ENCFF901UYM 381 bp overlap
ChIP WA01 ENCSR000ECB.TBP.WA01 158 bp overlap
TCF3 1 dataset
ChIP Kasumi-1 GSE43834.TCF3.Kasumi-1 167 bp overlap
TFAP4 1 dataset
ChIP K562 ENCFF727PXG 494 bp overlap
XRCC5 4 datasets
ChIP K-562 GSE120104.XRCC5.K-562 239 bp overlap
ChIP K-562 ENCSR506KWJ.XRCC5.K-562 224 bp overlap
ChIP K562 ENCFF115CTZ 405 bp overlap
ChIP K562 ENCFF828QYP 408 bp overlap
YY1 1 dataset
ChIP Hep-G2_RBM25-KD GSE120104.YY1.Hep-G2_RBM25-KD 289 bp overlap
ZBTB2 2 datasets
ChIP K562 ENCFF290ESQ 380 bp overlap
ChIP K562 ENCFF290ESQ 309 bp overlap
ZBTB33 2 datasets
ChIP K-562 ENCSR876GXA.ZBTB33.K-562 277 bp overlap
ChIP K562 ENCFF875HLX 113 bp overlap
ZBTB5 1 dataset
ChIP K562 ENCFF856PUG 319 bp overlap
ZBTB7A 3 datasets
ChIP K-562 GSE103445.ZBTB7A.K-562 191 bp overlap
ChIP K-562 ENCSR000BME.ZBTB7A.K-562 129 bp overlap
ChIP K562 ENCFF579ZGM 401 bp overlap
ZFP36 2 datasets
ChIP K-562 ENCSR776CYN.ZFP36.K-562 235 bp overlap
ChIP K562 ENCFF255RZG 297 bp overlap
ZFX 2 datasets
ChIP K562 ENCFF536AJO 513 bp overlap
ChIP K562 ENCFF536AJO 434 bp overlap
ZMYM3 1 dataset
ChIP K-562 ENCSR102KIN.ZMYM3.K-562 165 bp overlap
ZNF24 2 datasets
ChIP K-562 ENCSR695EQB.ZNF24.K-562 259 bp overlap
ChIP K-562 ENCSR099NCH.ZNF24.K-562 280 bp overlap
ZNF281 1 dataset
ChIP K-562 GSE121133.ZNF281.K-562 226 bp overlap
ZNF316 1 dataset
ChIP K562 ENCFF281INV 281 bp overlap
ZNF384 4 datasets
ChIP HEK293T ENCFF019DZX 382 bp overlap
ChIP HEK293T ENCSR882ICT.ZNF384.HEK293T 449 bp overlap
ChIP K-562 ENCSR000EFP.ZNF384.K-562 332 bp overlap
ChIP K562 ENCFF365NXQ 249 bp overlap
ZNF441 1 dataset
ChIP HEK293T GSE78099.ZNF441.HEK293T 371 bp overlap
ZNF592 3 datasets
ChIP K-562 ENCSR249BHQ.ZNF592.K-562 278 bp overlap
ChIP K562 ENCFF547OSS 237 bp overlap
ChIP K562 ENCFF547OSS 500 bp overlap
ZNF639 1 dataset
ChIP K562 ENCFF267NLX 286 bp overlap