chr2 : 60,453,330 60,453,758
428 bp 131 TFs 0 linked genes
This 428 bp open chromatin element has no linked target genes and is bound by 131 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:60,448,330 – 60,458,758
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
131 transcription factors
Source
Cell type
AATF 1 dataset
ChIP NALM-6 GSE93626.AATF.NALM-6 254 bp overlap
APC 1 dataset
ChIP HCT-116 GSE103894.APC.HCT-116 265 bp overlap
AR 1 dataset
ChIP MDA-MB-453_FOXA1 ERP003503.AR.MDA-MB-453_FOXA1 231 bp overlap
ASH2L 2 datasets
ChIP H1 ENCFF399KAM 428 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 428 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 196 bp overlap
BCL6 1 dataset
ChIP OCI-Ly1 GSE29282.BCL6.OCI-Ly1 219 bp overlap
BCOR 2 datasets
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 180 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 276 bp overlap
BMI1 1 dataset
ChIP MCF-7 ENCSR966YYJ.BMI1.MCF-7 286 bp overlap
BRD2 1 dataset
ChIP MV4-11_IBET151_500nM GSE120715.BRD2.MV4-11_IBET151_500nM 205 bp overlap
BRD4 5 datasets
ChIP CLL_patient3 GSE109411.BRD4.CLL_patient3 211 bp overlap
ChIP CLL_patient3_4h_CpG GSE109411.BRD4.CLL_patient3_4h_CpG 398 bp overlap
ChIP CLL_patient4_4h_CpG GSE109411.BRD4.CLL_patient4_4h_CpG 271 bp overlap
ChIP HEK293_Ctrl GSE129407.BRD4.HEK293_Ctrl 190 bp overlap
ChIP hESC GSE33281.BRD4.hESC 61 bp overlap
CBFB 1 dataset
ChIP ME-1 GSE46044.CBFB.ME-1 255 bp overlap
CDK9 1 dataset
ChIP HCT-116 GSE72622.CDK9.HCT-116 181 bp overlap
CHD2 2 datasets
ChIP H1 ENCFF991MKH 331 bp overlap
ChIP WA01 ENCSR000EBT.CHD2.WA01 127 bp overlap
CHD7 2 datasets
ChIP hiPSC_AF22_abD3F5 GSE108506.CHD7.hiPSC_AF22_abD3F5 244 bp overlap
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 319 bp overlap
COMMD3-BMI1,BMI1 1 dataset
ChIP MCF-7 ENCFF570JPP 297 bp overlap
CREB1 2 datasets
ChIP MDA-MB-134-VI GSE109103.CREB1.MDA-MB-134-VI 191 bp overlap
ChIP WA01 ENCSR000BSN.CREB1.WA01 150 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 301 bp overlap
CTCF 2 datasets
ChIP GSC23 GSE139416.CTCF.GSC23 213 bp overlap
ChIP U-937 ERP008568.CTCF.U-937 219 bp overlap
CTNNB1 1 dataset
ChIP hiPSC_D2 GSE132532.CTNNB1.hiPSC_D2 236 bp overlap
E2F6 2 datasets
ChIP H1 ENCFF785DWK 399 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 332 bp overlap
ELF1 1 dataset
ChIP A-549 GSE122203.ELF1.A-549 122 bp overlap
ELK1::SREBF2 2 datasets
Motif DE_12h DE_12h-ELK1SREBF2_MA1933.2 15 bp overlap
Motif ES_0h ES_0h-ELK1SREBF2_MA1933.2 15 bp overlap
EP300 3 datasets
ChIP H1 ENCFF927IYK 252 bp overlap
ChIP WA01 ENCSR000BKK.EP300.WA01 264 bp overlap
ChIP WA01 ENCSR000AUQ.EP300.WA01 149 bp overlap
ERG 1 dataset
ChIP SKNO-1 GSE23730.ERG.SKNO-1 261 bp overlap
ETS1 1 dataset
ChIP GM23338 ENCFF701IZH 299 bp overlap
ETV2::FIGLA 2 datasets
Motif DE_12h DE_12h-ETV2FIGLA_MA1941.2 13 bp overlap
Motif ES_0h ES_0h-ETV2FIGLA_MA1941.2 13 bp overlap
ETV3 2 datasets
Motif DE_12h DE_12h-ETV3_MA0763.2 9 bp overlap
Motif ES_0h ES_0h-ETV3_MA0763.2 9 bp overlap
ETV4 2 datasets
Motif DE_12h DE_12h-ETV4_MA0764.4 9 bp overlap
Motif ES_0h ES_0h-ETV4_MA0764.4 9 bp overlap
ETV5 2 datasets
Motif DE_12h DE_12h-ETV5_MA0765.4 9 bp overlap
Motif ES_0h ES_0h-ETV5_MA0765.4 9 bp overlap
FIGLA 1 dataset
Motif DE_12h DE_12h-FIGLA_MA0820.2 6 bp overlap
FOXP1 1 dataset
ChIP WTC11 ENCFF338WGC 400 bp overlap
Foxn1 1 dataset
Motif DE_12h DE_12h-Foxn1_MA1684.1 6 bp overlap
GATA2 1 dataset
ChIP ME-1_CBFB-MYH11-KD GSE117138.GATA2.ME-1_CBFB-MYH11-KD 292 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 421 bp overlap
GTF3C2 1 dataset
ChIP H9 GSE94418.GTF3C2.H9 310 bp overlap
HDAC2 2 datasets
ChIP H1 ENCFF353UJQ 428 bp overlap
ChIP WA01 ENCSR000AVB.HDAC2.WA01 184 bp overlap
HEXIM1 1 dataset
ChIP HCT-116 GSE72622.HEXIM1.HCT-116 196 bp overlap
HIC2 1 dataset
Motif DE_12h DE_12h-HIC2_MA0738.2 6 bp overlap
HNF4A 2 datasets
Motif DE_12h DE_12h-HNF4A_MA0114.5 9 bp overlap
Motif ES_0h ES_0h-HNF4A_MA0114.5 9 bp overlap
HNF4G 2 datasets
Motif DE_12h DE_12h-HNF4G_MA0484.3 9 bp overlap
Motif ES_0h ES_0h-HNF4G_MA0484.3 9 bp overlap
Hand1 3 datasets
Motif DE_12h DE_12h-Hand1_MA2123.1 9 bp overlap
Motif DE_12h DE_12h-Hand1_MA2123.1 9 bp overlap
Motif ES_0h ES_0h-Hand1_MA2123.1 9 bp overlap
IKZF2 1 dataset
Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap
JARID2 1 dataset
ChIP MRC-5_IPS25_MEG3 GSE48515.JARID2.MRC-5_IPS25_MEG3 182 bp overlap
JUN 1 dataset
ChIP 786-O GSE86092.JUN.786-O 183 bp overlap
KDM4A 1 dataset
ChIP WA01 ENCSR000AVC.KDM4A.WA01 194 bp overlap
KDM4C 1 dataset
ChIP KYSE-150 GSE53938.KDM4C.KYSE-150 179 bp overlap
KLF9 1 dataset
ChIP GBM1A GSE62211.KLF9.GBM1A 97 bp overlap
MAX 2 datasets
ChIP H1 ENCFF914VQY 357 bp overlap
ChIP WA01 ENCSR000EUP.MAX.WA01 297 bp overlap
MORC2 1 dataset
ChIP H9 GSE95374.MORC2.H9 227 bp overlap
MTA1 1 dataset
ChIP Hep-G2 ENCSR983KRB.MTA1.Hep-G2 189 bp overlap
MXI1 1 dataset
ChIP WA01 ENCSR000EBR.MXI1.WA01 142 bp overlap
MYC 1 dataset
ChIP CD34 GSE85488.MYC.CD34 113 bp overlap
NANOG 3 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 272 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 305 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 180 bp overlap
NHLH1 1 dataset
Motif DE_12h DE_12h-NHLH1_MA0048.3 9 bp overlap
NHLH2 1 dataset
Motif DE_12h DE_12h-NHLH2_MA1529.2 16 bp overlap
OGG1 3 datasets
ChIP HEK293 GSE89017.OGG1.HEK293 370 bp overlap
ChIP HEK293_15min GSE89017.OGG1.HEK293_15min 326 bp overlap
ChIP HEK293_60_min GSE89017.OGG1.HEK293_60_min 291 bp overlap
Olig2 1 dataset
Motif DE_12h DE_12h-Olig2_MA1997.2 6 bp overlap
POLR2A 5 datasets
ChIP A549 ENCFF748RAW 311 bp overlap
ChIP GM23338 ENCFF450WCS 428 bp overlap
ChIP H1 ENCFF566JSR 428 bp overlap
ChIP H1 ENCFF833NJP 411 bp overlap
ChIP spleen ENCFF706IUS 295 bp overlap
POU5F1 2 datasets
ChIP BG03 GSE21614.POU5F1.BG03 299 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 305 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 293 bp overlap
PRDM14 1 dataset
ChIP NCCIT GSE71675.PRDM14.NCCIT 230 bp overlap
PRRX2 1 dataset
ChIP WTC11 ENCFF107JGJ 301 bp overlap
RAD21 3 datasets
ChIP H1 ENCFF698EWO 241 bp overlap
ChIP H1 ENCFF967OJF 245 bp overlap
ChIP hiPSC_IV8 GSE106870.RAD21.hiPSC_IV8 304 bp overlap
RARA 1 dataset
ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 237 bp overlap
RBBP5 2 datasets
ChIP H1 ENCFF905HFL 428 bp overlap
ChIP WA01 ENCSR000AQC.RBBP5.WA01 367 bp overlap
RFX1 10 datasets
Motif DE_12h DE_12h-RFX1_MA0509.3 16 bp overlap
Motif ES_0h ES_0h-RFX1_MA0509.3 16 bp overlap
ChIP K-562 ENCSR968GIB.RFX1.K-562 345 bp overlap
ChIP K-562 ENCSR041AXL.RFX1.K-562 343 bp overlap
ChIP K562 ENCFF421AVO 303 bp overlap
ChIP K562 ENCFF809XVG 190 bp overlap
ChIP MCF-7 ENCFF782EZS 273 bp overlap
ChIP MCF-7 ENCFF973QAD 211 bp overlap
ChIP MCF-7 ENCSR788XNX.RFX1.MCF-7 298 bp overlap
ChIP MCF-7 ENCSR066TET.RFX1.MCF-7 352 bp overlap
RFX2 2 datasets
Motif DE_12h DE_12h-RFX2_MA0600.3 14 bp overlap
Motif ES_0h ES_0h-RFX2_MA0600.3 14 bp overlap
RFX3 3 datasets
Motif DE_12h DE_12h-RFX3_MA0798.3 16 bp overlap
Motif ES_0h ES_0h-RFX3_MA0798.3 16 bp overlap
ChIP Hep-G2 ENCSR633OVO.RFX3.Hep-G2 148 bp overlap
RFX5 2 datasets
Motif DE_12h DE_12h-RFX5_MA0510.3 14 bp overlap
Motif ES_0h ES_0h-RFX5_MA0510.3 14 bp overlap
RFX7 2 datasets
Motif DE_12h DE_12h-RFX7_MA1554.2 8 bp overlap
Motif ES_0h ES_0h-RFX7_MA1554.2 8 bp overlap
RUNX1 1 dataset
ChIP AML_age-50-70 GSE111821.RUNX1.AML_age-50-70 219 bp overlap
Rfx6 2 datasets
Motif DE_12h DE_12h-Rfx6_MA1724.2 9 bp overlap
Motif ES_0h ES_0h-Rfx6_MA1724.2 9 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 295 bp overlap
SIN3A 4 datasets
ChIP H1 ENCFF042ZSL 381 bp overlap
ChIP WA01 ENCSR000EBO.SIN3A.WA01 248 bp overlap
ChIP hiPSC_IB12 GSE106870.SIN3A.hiPSC_IB12 204 bp overlap
ChIP hiPSC_IID12 GSE106870.SIN3A.hiPSC_IID12 216 bp overlap
SIRT6 1 dataset
ChIP SK-MEL-239_L-C-B GSE102813.SIRT6.SK-MEL-239_L-C-B 159 bp overlap
SMAD2 1 dataset
Motif DE_12h DE_12h-SMAD2_MA1964.2 6 bp overlap
SMAD3 2 datasets
ChIP BG03 GSE21614.SMAD3.BG03 186 bp overlap
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 182 bp overlap
SMARCA4 5 datasets
ChIP NGP GSE134626.SMARCA4.NGP 140 bp overlap
ChIP NGP_ARID1A-het GSE134626.SMARCA4.NGP_ARID1A-het 168 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 303 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 374 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 276 bp overlap
SMARCC1 2 datasets
ChIP hiPSC GSE124903.SMARCC1.hiPSC 428 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 229 bp overlap
SP1 2 datasets
ChIP H1 ENCFF263FUH 262 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 298 bp overlap
SP5 1 dataset
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
SPI1 1 dataset
ChIP macrophage_IFNG GSE47188.SPI1.macrophage_IFNG 249 bp overlap
SREBP2 1 dataset
ChIP HCC70 GSE126380.SREBP2.HCC70 250 bp overlap
SRF 1 dataset
ChIP H1 ENCFF036PEF 185 bp overlap
SUPT5H 1 dataset
ChIP U2OS_siCtrl GSE115365.SUPT5H.U2OS_siCtrl 104 bp overlap
Stat5b 1 dataset
Motif DE_12h DE_12h-Stat5b_MA1625.2 9 bp overlap
TBL1X 1 dataset
ChIP HEK293T GSE35197.TBL1X.HEK293T 246 bp overlap
TBP 2 datasets
ChIP H1 ENCFF859IIO 317 bp overlap
ChIP WA01 ENCSR000ECB.TBP.WA01 177 bp overlap
TCF12 2 datasets
ChIP H1 ENCFF203EBH 251 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 212 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 251 bp overlap
TEAD1 4 datasets
Motif DE_12h DE_12h-TEAD1_MA0090.4 9 bp overlap
Motif ES_0h ES_0h-TEAD1_MA0090.4 9 bp overlap
ChIP WTC11 ENCFF502QUV 325 bp overlap
ChIP pancreas_12D ERP008682.TEAD1.pancreas_12D 195 bp overlap
TEAD3 2 datasets
Motif DE_12h DE_12h-TEAD3_MA0808.1 8 bp overlap
Motif ES_0h ES_0h-TEAD3_MA0808.1 8 bp overlap
TEAD4 6 datasets
Motif DE_12h DE_12h-TEAD4_MA0809.3 8 bp overlap
ChIP ESC S26-ESC-d0-TEAD4-exp1 364 bp overlap
Motif ES_0h ES_0h-TEAD4_MA0809.3 8 bp overlap
ChIP H1 ENCFF778PAX 181 bp overlap
ChIP WTC11 ENCFF114TZS 265 bp overlap
ChIP hESC GSE99202.TEAD4.hESC 185 bp overlap
TFAP2A 2 datasets
Motif DE_12h DE_12h-TFAP2A_MA0003.5 9 bp overlap
Motif ES_0h ES_0h-TFAP2A_MA0003.5 9 bp overlap
TFAP2B 2 datasets
Motif DE_12h DE_12h-TFAP2B_MA0812.2 9 bp overlap
Motif ES_0h ES_0h-TFAP2B_MA0812.2 9 bp overlap
TFAP2C 4 datasets
Motif DE_12h DE_12h-TFAP2C_MA0814.3 9 bp overlap
Motif ES_0h ES_0h-TFAP2C_MA0814.3 9 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 365 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 243 bp overlap
TFAP2E 2 datasets
Motif DE_12h DE_12h-TFAP2E_MA1569.2 9 bp overlap
Motif ES_0h ES_0h-TFAP2E_MA1569.2 9 bp overlap
TOP2A 1 dataset
ChIP KG-1_no-mitoxantrone GSE114048.TOP2A.KG-1_no-mitoxantrone 194 bp overlap
TRIM25 1 dataset
ChIP BT-549 GSE79588.TRIM25.BT-549 188 bp overlap
TRIM28 2 datasets
ChIP AF22 GSE84259.TRIM28.AF22 416 bp overlap
ChIP hESC GSE115387.TRIM28.hESC 241 bp overlap
Tcf12 1 dataset
Motif DE_12h DE_12h-Tcf12_MA0521.3 6 bp overlap
Twist2 1 dataset
Motif DE_12h DE_12h-Twist2_MA0633.3 6 bp overlap
YY1 2 datasets
ChIP H1 ENCFF524BTL 252 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 323 bp overlap
ZBTB11 2 datasets
Motif DE_12h DE_12h-ZBTB11_MA2329.1 9 bp overlap
Motif ES_0h ES_0h-ZBTB11_MA2329.1 9 bp overlap
ZBTB24 3 datasets
Motif DE_12h DE_12h-ZBTB24_MA2330.1 10 bp overlap
Motif DE_12h DE_12h-ZBTB24_MA2330.1 10 bp overlap
Motif ES_0h ES_0h-ZBTB24_MA2330.1 10 bp overlap
ZBTB48 1 dataset
ChIP U2OS_ZBTB48-KO GSE96776.ZBTB48.U2OS_ZBTB48-KO 345 bp overlap
ZEB1 1 dataset
Motif DE_12h DE_12h-ZEB1_MA0103.4 6 bp overlap
ZIC1 1 dataset
Motif DE_12h DE_12h-ZIC1_MA0696.1 14 bp overlap
ZIC4 1 dataset
Motif DE_12h DE_12h-ZIC4_MA0751.2 14 bp overlap
ZIC5 1 dataset
Motif DE_12h DE_12h-ZIC5_MA1584.2 15 bp overlap
ZNF207 1 dataset
ChIP WA09 GSE118632.ZNF207.WA09 328 bp overlap
ZNF263 1 dataset
Motif DE_12h DE_12h-ZNF263_MA0528.3 7 bp overlap
ZNF273 1 dataset
ChIP HEK293T GSE78099.ZNF273.HEK293T 214 bp overlap
ZNF317 2 datasets
Motif DE_12h DE_12h-ZNF317_MA1593.2 8 bp overlap
Motif ES_0h ES_0h-ZNF317_MA1593.2 8 bp overlap
ZNF320 3 datasets
Motif DE_12h DE_12h-ZNF320_MA1976.2 20 bp overlap
Motif DE_12h DE_12h-ZNF320_MA1976.2 20 bp overlap
Motif ES_0h ES_0h-ZNF320_MA1976.2 20 bp overlap
ZNF331 1 dataset
Motif DE_12h DE_12h-ZNF331_MA1726.2 10 bp overlap
ZNF417 1 dataset
Motif DE_12h DE_12h-ZNF417_MA1727.2 7 bp overlap
ZNF454 4 datasets
Motif DE_12h DE_12h-ZNF454_MA1712.2 17 bp overlap
Motif DE_12h DE_12h-ZNF454_MA1712.2 17 bp overlap
Motif ES_0h ES_0h-ZNF454_MA1712.2 17 bp overlap
Motif ES_0h ES_0h-ZNF454_MA1712.2 17 bp overlap
ZNF462 1 dataset
ChIP GM23338 ENCFF896CCA 251 bp overlap
ZNF76 1 dataset
Motif DE_12h DE_12h-ZNF76_MA1716.2 17 bp overlap
Zfp961 2 datasets
Motif DE_12h DE_12h-Zfp961_MA2126.1 8 bp overlap
Motif ES_0h ES_0h-Zfp961_MA2126.1 8 bp overlap
Zic2 1 dataset
Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap