chr11:63,909,610–63,910,221

chr11 : 63,909,610 – 63,910,221

611 bp 113 TFs 12 linked genes

This 611 bp open chromatin element is linked to 12 target genes and is bound by 113 transcription factors.

Linked Genes

12 genes

Gene	Expression	Dist. to TSS	Distance	Link type
RCOR2		6.9 kb	Proximal	Proximity
NAA40		29.0 kb	Distal	Multiome
COX8A		64.6 kb	Distal	Multiome
MARK2		70.9 kb	Distal	Multiome+HiCAR
OTUB1		76.5 kb	Distal	Multiome
SPINDOC		96.5 kb	Distal	Multiome
ZFTA		141.2 kb	Distal	Multiome
RTN3		228.5 kb	Distal	Multiome
ATL3		238.2 kb	Distal	Multiome
MACROD1		256.1 kb	Distal	Multiome
STIP1		276.2 kb	Distal	Multiome
PLAAT3		295.5 kb	Distal	Multiome

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

113 transcription factors

AGO1 4 datasets

ChIP Hep-G2 ENCSR555ZMV.AGO1.Hep-G2 190 bp overlap

ChIP Hep-G2 GSE120104.AGO1.Hep-G2 587 bp overlap

ChIP Hep-G2 ENCSR555ZMV.AGO1.Hep-G2 323 bp overlap

ChIP HepG2 ENCFF277EOU 145 bp overlap

AGO2 2 datasets

ChIP HepG2 ENCFF252VFI 221 bp overlap

ChIP HepG2 ENCFF773YDL 268 bp overlap

ChIP MDA-MB-453_FOXA1 ERP003503.AR.MDA-MB-453_FOXA1 150 bp overlap

ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 227 bp overlap

ARID1A 1 dataset

ChIP NGP GSE134626.ARID1A.NGP 611 bp overlap

ARID1B 1 dataset

ChIP MCF-7_shJUN GSE128445.ARID1B.MCF-7_shJUN 354 bp overlap

ARID2 1 dataset

ChIP Aska-SS_shSSX GSE108025.ARID2.Aska-SS_shSSX 457 bp overlap

ASH2L 2 datasets

ChIP WA01 ENCSR850KIP.ASH2L.WA01 152 bp overlap

ChIP WA01 ENCSR850KIP.ASH2L.WA01 168 bp overlap

ChIP WA01 ENCSR000BQU.ATF2.WA01 232 bp overlap

ChIP metastatic-neuroblastoma_SKNMM GSE100148.ATRX.metastatic-neuroblastoma_SKNMM 259 bp overlap

ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 184 bp overlap

BRD1 2 datasets

ChIP HUES-64 GSE104059.BRD1.HUES-64 70 bp overlap

ChIP HUES-64 GSE104059.BRD1.HUES-64 277 bp overlap

BRD4 15 datasets

ChIP COLO-741 GSE73319.BRD4.COLO-741 252 bp overlap

ChIP Kelly_resistant_JQ1 GSE103030.BRD4.Kelly_resistant_JQ1 202 bp overlap

ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 530 bp overlap

ChIP MCF-10A ERP003925.BRD4.MCF-10A 355 bp overlap

ChIP MPNST_PDJQ GSE62499.BRD4.MPNST_PDJQ 136 bp overlap

ChIP MPNST_PDJQ GSE62499.BRD4.MPNST_PDJQ 143 bp overlap

ChIP NCI-H1963 GSE145028.BRD4.NCI-H1963 144 bp overlap

ChIP NCI-H1963_shASXL3 GSE145028.BRD4.NCI-H1963_shASXL3 263 bp overlap

ChIP SK-N-BE2-C_Naive-veh GSE107706.BRD4.SK-N-BE2-C_Naive-veh 147 bp overlap

ChIP cortical-interneuron_KCl-pos GSE117508.BRD4.cortical-interneuron_KCl-pos 193 bp overlap

ChIP cortical-interneuron_R133C_KCl-neg_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-neg 507 bp overlap

ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 351 bp overlap

ChIP retina_AB1-FW20 GSE86981.BRD4.retina_AB1-FW20 611 bp overlap

ChIP retina_AB1-FW23 GSE86981.BRD4.retina_AB1-FW23 169 bp overlap

ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 290 bp overlap

CBFB 2 datasets

ChIP ME-1 GSE46044.CBFB.ME-1 226 bp overlap

ChIP SKNO-1 GSE23730.CBFB.SKNO-1 249 bp overlap

ChIP HeLa-S3 ENCSR392EAA.CHD1.HeLa-S3 114 bp overlap

CHD2 4 datasets

ChIP SK-N-SH ENCFF669KMB 361 bp overlap

ChIP SK-N-SH ENCSR274SLQ.CHD2.SK-N-SH 116 bp overlap

ChIP SK-N-SH ENCSR274SLQ.CHD2.SK-N-SH 203 bp overlap

ChIP WA01 ENCSR000EBT.CHD2.WA01 228 bp overlap

COBLL1 1 dataset

ChIP LTAD_EtOH GSE94577.COBLL1.LTAD_EtOH 223 bp overlap

CREB1 2 datasets

ChIP H1 ENCFF955PMP 320 bp overlap

ChIP WA01 ENCSR000BSN.CREB1.WA01 120 bp overlap

CTCF 6 datasets

ChIP anterior-temporal-cortex_fetal GSE116825.CTCF.anterior-temporal-cortex_fetal 154 bp overlap

ChIP hESC_D5 GSE116862.CTCF.hESC_D5 61 bp overlap

ChIP heart ENCSR232OFD.CTCF.heart 111 bp overlap

ChIP retina_Hu25 GSE137311.CTCF.retina_Hu25 60 bp overlap

ChIP retina_Hu6 GSE137311.CTCF.retina_Hu6 59 bp overlap

ChIP type B pancreatic cell ENCFF910FNQ 336 bp overlap

CTNNB1 1 dataset

ChIP hiPSC_D2 GSE132532.CTNNB1.hiPSC_D2 264 bp overlap

Cebpa 1 dataset

ChIP BLaER1 ENCFF262VBH 104 bp overlap

ChIP GM12878 ENCSR000BMB.ELF1.GM12878 143 bp overlap

ChIP WTC11 ENCFF692RZJ 497 bp overlap

ChIP CD34_NR29 GSE23730.ERG.CD34_NR29 212 bp overlap

ChIP ME-1 GSE46044.ERG.ME-1 353 bp overlap

ChIP SKNO-1 GSE23730.ERG.SKNO-1 611 bp overlap

ChIP MCF-7_PaPE-1_OA GSE93510.ESR1.MCF-7_PaPE-1_OA 225 bp overlap

ESR1_pS118 1 dataset

ChIP MCF-7_E2_sc GSE117569.ESR1_pS118.MCF-7_E2_sc 252 bp overlap

ESRRG 1 dataset

ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 254 bp overlap

ETS1 5 datasets

ChIP cardiomyocyte_D0 GSE129986.ETS1.cardiomyocyte_D0 198 bp overlap

ChIP cardiomyocyte_D14 GSE129986.ETS1.cardiomyocyte_D14 214 bp overlap

ChIP cardiomyocyte_D2 GSE129986.ETS1.cardiomyocyte_D2 192 bp overlap

ChIP cardiomyocyte_D2 GSE129986.ETS1.cardiomyocyte_D2 254 bp overlap

ChIP cardiomyocyte_D9 GSE129986.ETS1.cardiomyocyte_D9 369 bp overlap

FLI1 2 datasets

ChIP SKNO-1 GSE23730.FLI1.SKNO-1 611 bp overlap

ChIP UAE_ZINC GSE23730.FLI1.UAE_ZINC 224 bp overlap

FOXA2 1 dataset

ChIP BJ1-hTERT_FoxHnf1aCoExp GSE90454.FOXA2.BJ1-hTERT_FoxHnf1aCoExp 286 bp overlap

FOXO1 1 dataset

ChIP CD34 GSE80773.FOXO1.CD34 533 bp overlap

FOXP1 1 dataset

ChIP H9 GSE31006.FOXP1.H9 145 bp overlap

GLIS1 1 dataset

ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 227 bp overlap

GLIS2 2 datasets

ChIP HEK293 ENCSR535DIA.GLIS2.HEK293 185 bp overlap

ChIP HEK293 ENCSR535DIA.GLIS2.HEK293 245 bp overlap

HAND2 4 datasets

ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 263 bp overlap

ChIP Kelly GSE94822.HAND2.Kelly 110 bp overlap

ChIP Kelly GSE94822.HAND2.Kelly 119 bp overlap

ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 180 bp overlap

HDAC2 1 dataset

ChIP WA01 ENCSR000AVB.HDAC2.WA01 145 bp overlap

ChIP HEK293 ENCSR803GYT.HIC1.HEK293 223 bp overlap

HNRNPH1 2 datasets

ChIP Hep-G2 ENCSR066FXN.HNRNPH1.Hep-G2 257 bp overlap

ChIP Hep-G2 GSE120104.HNRNPH1.Hep-G2 278 bp overlap

IFNA1 1 dataset

ChIP Huh-7_GFP GSE110511.IFNA1.Huh-7_GFP 451 bp overlap

JARID2 1 dataset

ChIP MRC-5_IPS25_MEG3 GSE48515.JARID2.MRC-5_IPS25_MEG3 186 bp overlap

ChIP HAEC_TNFa_4h GSE89970.JUN.HAEC_TNFa_4h 138 bp overlap

ChIP WA01 ENCSR000BKP.JUND.WA01 204 bp overlap

ChIP GBM1A GSE62211.KLF9.GBM1A 571 bp overlap

KMT2A 3 datasets

ChIP MOLM-13_DMSO-D3-180110 GSE127507.KMT2A.MOLM-13_DMSO-D3-180110 287 bp overlap

ChIP RCH-ACV GSE83671.KMT2A.RCH-ACV 159 bp overlap

ChIP RS4-11_DMSO-D3-180402 GSE127507.KMT2A.RS4-11_DMSO-D3-180402 315 bp overlap

ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 340 bp overlap

ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 247 bp overlap

ChIP P493-6_24HR GSE125863.MAX.P493-6_24HR 193 bp overlap

ChIP HEK293 ENCSR290SSQ.MAZ.HEK293 338 bp overlap

ChIP HUVEC-C_siCTL GSE124892.MED1.HUVEC-C_siCTL 233 bp overlap

ChIP DU145_SH4 GSE135623.MTF2.DU145_SH4 212 bp overlap

ChIP SK-N-SH ENCFF746HVJ 491 bp overlap

ChIP NCI-H2171 GSE36354.MYC.NCI-H2171 255 bp overlap

MYCN 4 datasets

ChIP CHP-134 GSE129588.MYCN.CHP-134 275 bp overlap

ChIP Kelly GSE94822.MYCN.Kelly 559 bp overlap

ChIP Kelly GSE94782.MYCN.Kelly 248 bp overlap

ChIP SHEP-21N GSE80151.MYCN.SHEP-21N 198 bp overlap

ChIP K-562 ENCSR737LTZ.MYNN.K-562 192 bp overlap

NELFE 1 dataset

ChIP K-562_HS GSE112379.NELFE.K-562_HS 196 bp overlap

NEUROD1 1 dataset

ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 342 bp overlap

NFKB1 2 datasets

ChIP HEK293T GSE129618.NFKB1.HEK293T 274 bp overlap

ChIP HEK293T_2KR GSE129618.NFKB1.HEK293T_2KR 537 bp overlap

ChIP HCT-116_ab20662 GSE97527.PAF1.HCT-116_ab20662 458 bp overlap

PATZ1 1 dataset

ChIP HEK293 ENCSR966ULI.PATZ1.HEK293 160 bp overlap

PCBP1 2 datasets

ChIP Hep-G2 GSE120104.PCBP1.Hep-G2 216 bp overlap

ChIP Hep-G2 ENCSR872EVQ.PCBP1.Hep-G2 182 bp overlap

PCGF1 1 dataset

ChIP WA01 GSE104690.PCGF1.WA01 495 bp overlap

PITX3 1 dataset

ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 263 bp overlap

POLR2A 13 datasets

ChIP GM12878 ENCFF521FXC 95 bp overlap

ChIP H1 ENCFF566JSR 116 bp overlap

ChIP H1 ENCFF566JSR 448 bp overlap

ChIP H1 ENCFF566JSR 136 bp overlap

ChIP HeLa-S3 ENCFF224LWS 529 bp overlap

ChIP HeLa-S3 ENCFF224LWS 281 bp overlap

ChIP K562 ENCFF137JSF 393 bp overlap

ChIP Panc1 ENCFF290KAB 373 bp overlap

ChIP SK-N-MC ENCFF088IVG 124 bp overlap

ChIP spleen ENCFF706IUS 310 bp overlap

ChIP spleen ENCFF706IUS 345 bp overlap

ChIP vagina ENCFF384GAB 432 bp overlap

ChIP vagina ENCFF384GAB 139 bp overlap

POLR2G 1 dataset

ChIP K562 ENCFF047BLG 308 bp overlap

POU5F1 2 datasets

ChIP DE_D1 DED1-OCT4_Batch_II 517 bp overlap

ChIP SKM-1 GSE93706.POU5F1.SKM-1 403 bp overlap

POU5F1_M 1 dataset

ChIP DE_D1 DED1-OCT4-M_Batch_II 464 bp overlap

PRDM14 2 datasets

ChIP NCCIT GSE71675.PRDM14.NCCIT 280 bp overlap

ChIP primordial-germ-cell-like-cell GSE138674.PRDM14.primordial-germ-cell-like-cell 228 bp overlap

PRRX2 1 dataset

ChIP WTC11 ENCFF107JGJ 106 bp overlap

RAD21 2 datasets

ChIP SK-N-SH ENCSR000EHX.RAD21.SK-N-SH 132 bp overlap

ChIP neuroblastoma GSE115862.RAD21.neuroblastoma 230 bp overlap

RARA 2 datasets

ChIP hiPSC_D3 GSE109172.RARA.hiPSC_D3 194 bp overlap

ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 264 bp overlap

RBFOX2 2 datasets

ChIP K562 ENCFF967GRF 611 bp overlap

ChIP K562 ENCFF967GRF 209 bp overlap

RBM22 6 datasets

ChIP K-562 GSE120104.RBM22.K-562 240 bp overlap

ChIP K-562 ENCSR848AOP.RBM22.K-562 238 bp overlap

ChIP K-562 GSE120104.RBM22.K-562 265 bp overlap

ChIP K-562 ENCSR848AOP.RBM22.K-562 264 bp overlap

ChIP K562 ENCFF420JDS 379 bp overlap

ChIP K562 ENCFF629OUL 378 bp overlap

RORC 2 datasets

ChIP HCC70 GSE126380.RORC.HCC70 583 bp overlap

ChIP HCC70_XY018 GSE126380.RORC.HCC70_XY018 404 bp overlap

RPA2_phospho 1 dataset

ChIP HeLa_shTOP1 GSE108172.RPA2_phospho.HeLa_shTOP1 179 bp overlap

RUNX1 3 datasets

ChIP AML GSE111821.RUNX1.AML 247 bp overlap

ChIP ME-1 GSE46044.RUNX1.ME-1 296 bp overlap

ChIP SKNO-1 GSE23730.RUNX1.SKNO-1 482 bp overlap

ChIP pancreatic-progenitor_PP1 GSE104840.RXR.pancreatic-progenitor_PP1 330 bp overlap

RXRA 2 datasets

ChIP H1 ENCFF570NHK 201 bp overlap

ChIP WA01 ENCSR000BJW.RXRA.WA01 185 bp overlap

RYBP 2 datasets

ChIP WA01 GSE104690.RYBP.WA01 201 bp overlap

ChIP WA01 GSE104690.RYBP.WA01 262 bp overlap

SIN3A 2 datasets

ChIP WA01 ENCSR000EBO.SIN3A.WA01 197 bp overlap

ChIP WA01 ENCSR000EBO.SIN3A.WA01 171 bp overlap

SIRT6 2 datasets

ChIP SK-MEL-239_L-C-B GSE102813.SIRT6.SK-MEL-239_L-C-B 159 bp overlap

ChIP SK-MEL-239_L-C-B GSE102813.SIRT6.SK-MEL-239_L-C-B 188 bp overlap

SMAD2-3 1 dataset

ChIP HUVEC-C_TGFB1 GSE134556.SMAD2-3.HUVEC-C_TGFB1 196 bp overlap

SMAD3 1 dataset

ChIP WTC11 ENCFF815YYQ 100 bp overlap

SMARCA4 4 datasets

ChIP Aska-SS GSE108025.SMARCA4.Aska-SS 384 bp overlap

ChIP Aska-SS_shSSX GSE108025.SMARCA4.Aska-SS_shSSX 144 bp overlap

ChIP NSC GSE125033.SMARCA4.NSC 348 bp overlap

ChIP hiPSC GSE124903.SMARCA4.hiPSC 228 bp overlap

SMARCB1 1 dataset

ChIP hiPSC GSE124903.SMARCB1.hiPSC 245 bp overlap

SMARCC1 2 datasets

ChIP Aska-SS GSE108025.SMARCC1.Aska-SS 611 bp overlap

ChIP hiPSC GSE124903.SMARCC1.hiPSC 292 bp overlap

SOX17_M 1 dataset

ChIP DE_D2 DED2-SOX17-M_Batch_II 272 bp overlap

ChIP HEK293 GSE76494.SP1.HEK293 487 bp overlap

ChIP WA01 ENCSR000BIR.SP1.WA01 155 bp overlap

ChIP WTC11 ENCFF688PEU 400 bp overlap

ChIP HEK293 ENCFF181QXT 318 bp overlap

ChIP HEK293 ENCSR807LQP.SP2.HEK293 576 bp overlap

ChIP HEK293 GSE76494.SP2.HEK293 177 bp overlap

ChIP HEK293 GSE76494.SP2.HEK293 231 bp overlap

ChIP HEK293 GSE76494.SP4.HEK293 369 bp overlap

SREBP2 2 datasets

ChIP HCC70 GSE126380.SREBP2.HCC70 313 bp overlap

ChIP HCC70_XY018 GSE126380.SREBP2.HCC70_XY018 421 bp overlap

ChIP Aska-SS GSE108025.SS18.Aska-SS 611 bp overlap

SUPT5H 3 datasets

ChIP HeLa GSE125534.SUPT5H.HeLa 192 bp overlap

ChIP HeLa GSE125534.SUPT5H.HeLa 271 bp overlap

ChIP U2OS_siMYC GSE115365.SUPT5H.U2OS_siMYC 103 bp overlap

SUPT6H 1 dataset

ChIP HCT-116_Inhibitor GSE130509.SUPT6H.HCT-116_Inhibitor 366 bp overlap

ChIP H1 ENCFF478SZO 95 bp overlap

ChIP H1 ENCFF061XZZ 205 bp overlap

ChIP Kelly GSE94822.TBX2.Kelly 315 bp overlap

TFAP2C 2 datasets

ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 531 bp overlap

ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 490 bp overlap

ChIP LNCaP_DHT GSE63202.TOP1.LNCaP_DHT 114 bp overlap

ChIP IMR-90_SENES_SHP53 GSE42728.TP53.IMR-90_SENES_SHP53 114 bp overlap

TP63 2 datasets

ChIP breast-organoid GSE113909.TP63.breast-organoid 116 bp overlap

ChIP keratinocyte_diff GSE33571.TP63.keratinocyte_diff 141 bp overlap

TRIM25 1 dataset

ChIP BT-549 GSE79588.TRIM25.BT-549 180 bp overlap

TSHZ2 1 dataset

ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR282NLQ.TSHZ2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 156 bp overlap

TWIST1 2 datasets

ChIP BE2C GSE80151.TWIST1.BE2C 167 bp overlap

ChIP SK-N-BE2-C GSE80151.TWIST1.SK-N-BE2-C 167 bp overlap

VEZF1 1 dataset

ChIP K562 ENCFF053XDV 202 bp overlap

ChIP SMMC-7721 GSE126982.WDR5.SMMC-7721 294 bp overlap

ChIP Huh-7 GSE97411.YY1.Huh-7 583 bp overlap

ChIP WA01 ENCSR000BKD.YY1.WA01 209 bp overlap

ZBTB48 1 dataset

ChIP U2OS_ZBTB48-KO GSE96776.ZBTB48.U2OS_ZBTB48-KO 114 bp overlap

ZBTB7A 2 datasets

ChIP K-562 ENCSR000BME.ZBTB7A.K-562 216 bp overlap

ChIP K-562 ENCSR000BME.ZBTB7A.K-562 130 bp overlap

ZBTB8A 1 dataset

ChIP HEK293 ENCSR481FEC.ZBTB8A.HEK293 213 bp overlap

ChIP HEK293T_FLAG GSE145160.ZFX.HEK293T_FLAG 535 bp overlap

ZNF341 2 datasets

ChIP HEK293 ENCSR185FOY.ZNF341.HEK293 608 bp overlap

ChIP HEK293 GSE76494.ZNF341.HEK293 142 bp overlap

ZNF398 1 dataset

ChIP HEK293 ENCSR676ZEF.ZNF398.HEK293 215 bp overlap

ZNF467 1 dataset

ChIP HEK293 GSE76494.ZNF467.HEK293 157 bp overlap

ZNF528 1 dataset

ChIP HEK293 GSE76494.ZNF528.HEK293 162 bp overlap

ZNF70 1 dataset

ChIP SK-N-SH ENCFF833ACX 174 bp overlap

ZXDB 2 datasets

ChIP HEK293 ENCFF835SGA 299 bp overlap

ChIP HEK293 ENCSR559IOZ.ZXDB.HEK293 181 bp overlap