chr11 : 59,558,035 59,558,468
433 bp 112 TFs 2 linked genes
This 433 bp open chromatin element is linked to LINC02739 and ENSG00000255139 and is bound by 112 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
LINC02739 2.5 kb Proximal Proximity
ENSG00000255139 7.5 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr11:59,553,035 – 59,563,468
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
112 transcription factors
Source
Cell type
AFF1 2 datasets
ChIP K-562 ENCSR426URK.AFF1.K-562 108 bp overlap
ChIP K562 ENCFF583EEH 135 bp overlap
ARID2 1 dataset
ChIP Hep-G2 GSE69566.ARID2.Hep-G2 375 bp overlap
ARID4A 1 dataset
ChIP HepG2 ENCFF142DIE 113 bp overlap
ASH2L 2 datasets
ChIP Hep-G2 ENCSR508LMH.ASH2L.Hep-G2 423 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 433 bp overlap
ATF1 1 dataset
ChIP K562 ENCFF817JQF 75 bp overlap
ATF4 1 dataset
ChIP K-562 ENCSR145TSJ.ATF4.K-562 56 bp overlap
BATF 1 dataset
ChIP GM12878 ENCFF954REE 151 bp overlap
BCL3 1 dataset
ChIP A549 ENCFF214WKT 129 bp overlap
BCOR 1 dataset
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 356 bp overlap
BRD2 8 datasets
ChIP K-562_IBET151_50nM GSE120715.BRD2.K-562_IBET151_50nM 175 bp overlap
ChIP LPS141 GSE111253.BRD2.LPS141 137 bp overlap
ChIP MDA-MB-231_BAZ2AsiRNA GSE116879.BRD2.MDA-MB-231_BAZ2AsiRNA 103 bp overlap
ChIP SK-MEL-147 GSE94488.BRD2.SK-MEL-147 310 bp overlap
ChIP THP-1_DMSO GSE138084.BRD2.THP-1_DMSO 433 bp overlap
ChIP THP-1_iBET GSE138084.BRD2.THP-1_iBET 268 bp overlap
ChIP THP-1_iBET-BD1 GSE138084.BRD2.THP-1_iBET-BD1 301 bp overlap
ChIP THP-1_iBET-BD2 GSE138084.BRD2.THP-1_iBET-BD2 375 bp overlap
BRD3 7 datasets
ChIP H-1_DE GSE126661.BRD3.H-1_DE 433 bp overlap
ChIP K-562_DMSO GSE138084.BRD3.K-562_DMSO 81 bp overlap
ChIP K-562_DMSO GSE120715.BRD3.K-562_DMSO 146 bp overlap
ChIP MV4-11_DMSO GSE120715.BRD3.MV4-11_DMSO 188 bp overlap
ChIP MV4-11_IBET151_50nM GSE120715.BRD3.MV4-11_IBET151_50nM 139 bp overlap
ChIP MV4-11_IBET151_50nM GSE120715.BRD3.MV4-11_IBET151_50nM 143 bp overlap
ChIP THP-1_DMSO-PMA GSE138084.BRD3.THP-1_DMSO-PMA 412 bp overlap
BRD4 15 datasets
ChIP HAP1 GSE108387.BRD4.HAP1 433 bp overlap
ChIP HCT-15 GSE73319.BRD4.HCT-15 433 bp overlap
ChIP HEK293T GSE39579.BRD4.HEK293T 63 bp overlap
ChIP K-562_DMSO GSE138084.BRD4.K-562_DMSO 376 bp overlap
ChIP K-562_DMSO-IFNG GSE138084.BRD4.K-562_DMSO-IFNG 431 bp overlap
ChIP K-562_iBET-BD2-IFNG GSE138084.BRD4.K-562_iBET-BD2-IFNG 78 bp overlap
ChIP LP1_SGCCBP300 GSE71909.BRD4.LP1_SGCCBP300 138 bp overlap
ChIP MOLM-14_DMSO GSE65138.BRD4.MOLM-14_DMSO 433 bp overlap
ChIP MOLM-14_IBET GSE65138.BRD4.MOLM-14_IBET 141 bp overlap
ChIP MV4-11_DMSO GSE71776.BRD4.MV4-11_DMSO 94 bp overlap
ChIP MV4-11_DMSO GSE120715.BRD4.MV4-11_DMSO 359 bp overlap
ChIP SUM159PT_Dox_48h GSE87418.BRD4.SUM159PT_Dox_48h 114 bp overlap
ChIP THP-1_DMSO GSE138084.BRD4.THP-1_DMSO 433 bp overlap
ChIP THP-1_DMSO-PMA GSE138084.BRD4.THP-1_DMSO-PMA 220 bp overlap
ChIP THP-1_iBET-BD2 GSE138084.BRD4.THP-1_iBET-BD2 422 bp overlap
BRD9 1 dataset
ChIP K-562 ENCSR177XCS.BRD9.K-562 103 bp overlap
CDK8 4 datasets
ChIP MOLM-14 GSE65138.CDK8.MOLM-14 256 bp overlap
ChIP MOLM-14_IBET GSE65138.CDK8.MOLM-14_IBET 145 bp overlap
ChIP leiomyoma_PT886 GSE128230.CDK8.leiomyoma_PT886 70 bp overlap
ChIP leiomyoma_PT916 GSE128230.CDK8.leiomyoma_PT916 63 bp overlap
CEBPB 1 dataset
ChIP K562 ENCFF584CTB 146 bp overlap
CEBPG 1 dataset
ChIP K562 ENCFF956TPS 157 bp overlap
CHD1 3 datasets
ChIP H1 ENCFF998XEK 433 bp overlap
ChIP WA01 ENCSR000AQK.CHD1.WA01 160 bp overlap
ChIP WA01 ENCSR000AQK.CHD1.WA01 153 bp overlap
CHD4 3 datasets
ChIP A-549 ENCSR550SCU.CHD4.A-549 160 bp overlap
ChIP GM12878 ENCSR751CJG.CHD4.GM12878 273 bp overlap
ChIP SCMC GSE155861.CHD4.SCMC 218 bp overlap
CREB3 1 dataset
ChIP K-562 ENCSR093FKD.CREB3.K-562 279 bp overlap
CTCF 5 datasets
ChIP 22Rv1 ENCFF466OXN 183 bp overlap
ChIP DOHH2 ENCFF637WNW 60 bp overlap
ChIP DOHH2 ENCSR084RDK.CTCF.DOHH2 189 bp overlap
ChIP OCI-Ly1 ENCSR072EUE.CTCF.OCI-Ly1 85 bp overlap
ChIP OCI-Ly7 ENCSR027HML.CTCF.OCI-Ly7 155 bp overlap
DMAP1 1 dataset
ChIP HepG2 ENCFF247MSU 433 bp overlap
DPF2 1 dataset
ChIP K-562 ENCSR219BXP.DPF2.K-562 279 bp overlap
EED 1 dataset
ChIP GM12878 ENCFF266FYW 285 bp overlap
FOSL1 1 dataset
ChIP K562 ENCFF455MKD 264 bp overlap
GTF3C2 4 datasets
ChIP HeLa-S3 ENCFF144RTV 82 bp overlap
ChIP HeLa-S3 ENCSR000DNY.GTF3C2.HeLa-S3 124 bp overlap
ChIP K-562 ENCSR000DOD.GTF3C2.K-562 150 bp overlap
ChIP T98G_serum GSE120162.GTF3C2.T98G_serum 109 bp overlap
HDAC1 1 dataset
ChIP HepG2 ENCFF304IEJ 76 bp overlap
HMGXB4 3 datasets
ChIP Hep-G2 ENCSR599XKG.HMGXB4.Hep-G2 257 bp overlap
ChIP Hep-G2 ENCSR174GOO.HMGXB4.Hep-G2 392 bp overlap
ChIP WTC11 ENCFF962POR 101 bp overlap
IKZF1 2 datasets
ChIP K-562 ENCSR395HWC.IKZF1.K-562 433 bp overlap
ChIP K562 ENCFF771OHZ 80 bp overlap
IKZF2 2 datasets
Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap
ChIP GM12878 ENCFF238LYK 96 bp overlap
INO80 1 dataset
ChIP Huh-7 GSE97411.INO80.Huh-7 433 bp overlap
IRF1 1 dataset
ChIP K-562 ENCSR854MCV.IRF1.K-562 326 bp overlap
IRF4 1 dataset
ChIP T-cell GSE136853.IRF4.T-cell 190 bp overlap
IRF8 1 dataset
ChIP THP-1 GSE123872.IRF8.THP-1 141 bp overlap
JMJD1C 1 dataset
ChIP THP-1 GSE63484.JMJD1C.THP-1 128 bp overlap
JUNB 1 dataset
ChIP GM12878 ENCSR897MMC.JUNB.GM12878 61 bp overlap
KAT7 1 dataset
ChIP HepG2 ENCFF613PTN 80 bp overlap
KDM1A 3 datasets
ChIP NB4_DMSO GSE128528.KDM1A.NB4_DMSO 116 bp overlap
ChIP SKNO-1_GSK690 GSE71739.KDM1A.SKNO-1_GSK690 165 bp overlap
ChIP SKNO-1_RN1 GSE71739.KDM1A.SKNO-1_RN1 176 bp overlap
KLF4 1 dataset
Motif DE_12h DE_12h-KLF4_MA0039.5 8 bp overlap
KMT2A 1 dataset
ChIP MOLM-13_CBS79-KO-VP-HOTTIP GSE114981.KMT2A.MOLM-13_CBS79-KO-VP-HOTTIP 102 bp overlap
MAX 1 dataset
ChIP WA01 ENCSR000EUP.MAX.WA01 138 bp overlap
MCRS1 2 datasets
ChIP Huh-7 GSE97411.MCRS1.Huh-7 231 bp overlap
ChIP Huh-7 GSE97411.MCRS1.Huh-7 137 bp overlap
MED1 3 datasets
ChIP HCT-116_shLuc GSE121798.MED1.HCT-116_shLuc 170 bp overlap
ChIP HCT-116_shLuc_thaps GSE121798.MED1.HCT-116_shLuc_thaps 224 bp overlap
ChIP MOLM-14 GSE65138.MED1.MOLM-14 147 bp overlap
MED26 1 dataset
ChIP HCT-116 GSE121355.MED26.HCT-116 380 bp overlap
MLLT1 3 datasets
ChIP GM12878 ENCFF995GXC 132 bp overlap
ChIP GM12878 ENCSR552XSN.MLLT1.GM12878 312 bp overlap
ChIP K-562 ENCSR107GRP.MLLT1.K-562 175 bp overlap
MTA2 1 dataset
ChIP K-562 ENCSR411UYA.MTA2.K-562 308 bp overlap
MYBL2 1 dataset
ChIP A-673 GSE119971.MYBL2.A-673 82 bp overlap
MYC 2 datasets
ChIP K-562 ENCSR000EGJ.MYC.K-562 195 bp overlap
ChIP K562 ENCFF988ZRU 147 bp overlap
MYPOP 1 dataset
ChIP HepG2 ENCFF176TQL 128 bp overlap
NBN 2 datasets
ChIP GM12878 ENCSR278SQL.NBN.GM12878 165 bp overlap
ChIP K-562 ENCSR085QEV.NBN.K-562 220 bp overlap
NELFCD 1 dataset
ChIP DLD-1_NELFCD-AID GSE144786.NELFCD.DLD-1_NELFCD-AID 103 bp overlap
NFKB1 1 dataset
ChIP L1236 GSE63736.NFKB1.L1236 98 bp overlap
NFKB2 1 dataset
ChIP L1236 GSE63736.NFKB2.L1236 80 bp overlap
NFRKB 2 datasets
ChIP K-562 ENCSR657EOF.NFRKB.K-562 384 bp overlap
ChIP K562 ENCFF221WAF 54 bp overlap
NR2F2 1 dataset
ChIP K-562 ENCSR000BRS.NR2F2.K-562 137 bp overlap
NRF1 1 dataset
ChIP K562 ENCFF791UHF 141 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 433 bp overlap
PHF8 7 datasets
ChIP H1 ENCFF427UFV 286 bp overlap
ChIP Hep-G2 ENCSR604VAE.PHF8.Hep-G2 149 bp overlap
ChIP HepG2 ENCFF065NWR 95 bp overlap
ChIP HepG2 ENCFF065NWR 348 bp overlap
ChIP K-562 ENCSR000AQH.PHF8.K-562 108 bp overlap
ChIP K562 ENCFF217UCA 257 bp overlap
ChIP WA01 ENCSR000ATK.PHF8.WA01 81 bp overlap
PHIP 3 datasets
ChIP HCT-116_MLL1-KO__ab833 GSE101646.PHIP.HCT-116_MLL1-KO__ab833 261 bp overlap
ChIP HCT-116_ab833 GSE101646.PHIP.HCT-116_ab833 433 bp overlap
ChIP HCT-116_ab834 GSE101646.PHIP.HCT-116_ab834 433 bp overlap
POLR2A 4 datasets
ChIP K562 ENCFF419GHN 187 bp overlap
ChIP K562 ENCFF836GHX 198 bp overlap
ChIP K562 ENCFF836GHX 402 bp overlap
ChIP erythroblast ENCFF498VMR 98 bp overlap
POLR2G 2 datasets
ChIP K562 ENCFF648YPL 50 bp overlap
ChIP K562 ENCFF648YPL 252 bp overlap
POU5F1 1 dataset
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 411 bp overlap
PRDM1 1 dataset
Motif DE_12h DE_12h-PRDM1_MA0508.4 7 bp overlap
PRDM15 1 dataset
ChIP HepG2 ENCFF259LUZ 57 bp overlap
PSIP1 1 dataset
ChIP T-REx-293 GSE117155.PSIP1.T-REx-293 110 bp overlap
Prdm5 1 dataset
Motif DE_12h DE_12h-Prdm5_MA1999.2 11 bp overlap
RBFOX2 3 datasets
ChIP K-562 GSE120104.RBFOX2.K-562 205 bp overlap
ChIP K-562 ENCSR822LBD.RBFOX2.K-562 180 bp overlap
ChIP K562 ENCFF196WTG 336 bp overlap
RBPJ 1 dataset
Motif DE_12h DE_12h-RBPJ_MA1116.2 6 bp overlap
REPIN1 2 datasets
ChIP HEK293 ENCSR146NLL.REPIN1.HEK293 93 bp overlap
ChIP HepG2 ENCFF598VSY 94 bp overlap
REST 1 dataset
ChIP K-562 ENCSR000BMW.REST.K-562 106 bp overlap
RUVBL2 4 datasets
ChIP Huh-7 GSE97411.RUVBL2.Huh-7 108 bp overlap
ChIP U2OS GSE130602.RUVBL2.U2OS 331 bp overlap
ChIP U2OS_DMSO GSE130507.RUVBL2.U2OS_DMSO 217 bp overlap
ChIP U2OS_cordycepin GSE130507.RUVBL2.U2OS_cordycepin 319 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 305 bp overlap
SOX11 1 dataset
ChIP GRANT-A519 GSE52146.SOX11.GRANT-A519 78 bp overlap
SPI1 2 datasets
ChIP DC_96h_donorM GSE128834.SPI1.DC_96h_donorM 167 bp overlap
ChIP K-562 GSE70482.SPI1.K-562 142 bp overlap
SPIC 1 dataset
Motif DE_12h DE_12h-SPIC_MA0687.2 13 bp overlap
STAT1 2 datasets
ChIP CD14_INFG GSE43036.STAT1.CD14_INFG 104 bp overlap
ChIP CD14_INFG_LPS GSE43036.STAT1.CD14_INFG_LPS 139 bp overlap
SUPT5H 2 datasets
ChIP DLD-1_NELFCD-AID GSE144786.SUPT5H.DLD-1_NELFCD-AID 63 bp overlap
ChIP DLD-1_NELFCD-AID_treated GSE144786.SUPT5H.DLD-1_NELFCD-AID_treated 95 bp overlap
TAF1 3 datasets
ChIP H1 ENCFF478SZO 286 bp overlap
ChIP WA01 ENCSR000BHO.TAF1.WA01 174 bp overlap
ChIP WA01 ENCSR000BHO.TAF1.WA01 82 bp overlap
TARDBP 1 dataset
ChIP GM12878 ENCFF866POT 67 bp overlap
TBP 5 datasets
ChIP H1 ENCFF859IIO 284 bp overlap
ChIP K-562 ENCSR000EHA.TBP.K-562 158 bp overlap
ChIP WA01 ENCSR000ECB.TBP.WA01 201 bp overlap
ChIP hESC_10h GSE122298.TBP.hESC_10h 433 bp overlap
ChIP hESC_8h GSE122298.TBP.hESC_8h 433 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 95 bp overlap
TRIM24 1 dataset
ChIP MOLM-13_dTRIM24 GSE100571.TRIM24.MOLM-13_dTRIM24 85 bp overlap
VEZF1 1 dataset
ChIP K562 ENCFF053XDV 100 bp overlap
YY1 2 datasets
ChIP Huh-7 GSE97411.YY1.Huh-7 433 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 149 bp overlap
ZBTB26 2 datasets
ChIP HEK293 ENCFF752POA 67 bp overlap
ChIP HEK293 ENCFF752TCU 57 bp overlap
ZBTB33 1 dataset
ChIP K562 ENCFF875HLX 164 bp overlap
ZBTB40 1 dataset
ChIP K562 ENCFF337GJB 182 bp overlap
ZFX 1 dataset
ChIP K562 ENCFF536AJO 82 bp overlap
ZGPAT 1 dataset
ChIP HepG2 ENCFF055YSO 77 bp overlap
ZKSCAN1 4 datasets
ChIP Hep-G2 ENCSR157CAU.ZKSCAN1.Hep-G2 260 bp overlap
ChIP HepG2 ENCFF578KDY 299 bp overlap
ChIP K-562 ENCSR882ERE.ZKSCAN1.K-562 347 bp overlap
ChIP K562 ENCFF977CBA 209 bp overlap
ZNF230 1 dataset
ChIP HepG2 ENCFF370ATB 120 bp overlap
ZNF274 2 datasets
ChIP K562 ENCFF187RMG 67 bp overlap
ChIP K562 ENCFF187RMG 268 bp overlap
ZNF280D 1 dataset
ChIP HepG2 ENCFF203BIA 57 bp overlap
ZNF395 1 dataset
ChIP K562 ENCFF464EIT 207 bp overlap
ZNF441 1 dataset
ChIP HEK293T GSE78099.ZNF441.HEK293T 212 bp overlap
ZNF592 1 dataset
ChIP K562 ENCFF547OSS 75 bp overlap
ZNF644 1 dataset
ChIP K562 ENCFF290PDB 244 bp overlap
ZNF701 1 dataset
Motif DE_12h DE_12h-ZNF701_MA1987.2 17 bp overlap
ZNF711 1 dataset
ChIP HEK293T GSE145160.ZNF711.HEK293T 347 bp overlap
ZNF75D 1 dataset
Motif DE_12h DE_12h-ZNF75D_MA1601.2 12 bp overlap
ZNF816 1 dataset
ChIP HepG2 ENCFF294VPD 90 bp overlap
ZNF83 1 dataset
ChIP K562 ENCFF340RTV 225 bp overlap
ZNF850 1 dataset
ChIP HepG2 ENCFF671RTH 240 bp overlap
ZNF878 1 dataset
ChIP HepG2 ENCFF165VOD 143 bp overlap