Predicted to enable triplet codon-amino acid adaptor activity. Predicted to be involved in translation. [provided by Alliance of Genome Resources, Jul 2025]
Transcription factors with Perturb-seq knockdown data for LINC02739. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = LINC02739 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of LINC02739, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr11:59,549,065–59,551,594 | 9.4 kb | Proximal (<10kb) | 1090 | |
| chr11:59,551,697–59,552,681 | 8.3 kb | Proximal (<10kb) | 345 | |
| chr11:59,555,666–59,556,747 | 4.2 kb | Proximal (<10kb) | 594 | |
| chr11:59,556,871–59,557,924 | 3.0 kb | Proximal (<10kb) | 658 | |
| chr11:59,558,035–59,558,468 | 2.5 kb | Proximal (<10kb) | 112 | |
| chr11:59,559,914–59,561,504 | at TSS | At TSS | 784 | |
| chr11:59,565,720–59,566,773 | 4.8 kb | Proximal (<10kb) | 857 |
Genomic view of the LINC02739 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.